Clone BS18065 Report

Search the DGRC for BS18065

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptEloB-RA
Protein status:BS18065.pep: full length peptide match
Sequenced Size:389

Clone Sequence Records

BS18065.complete Sequence

389 bp assembled on 2010-02-09

GenBank Submission: KX806123

> BS18065.complete
GAAGTTATCAGTCGACATGGACGTGTTCCTTATGATCAGGCGGCAAAAGA
CCACCATCTTCACGGACGCCAAGGAGAACACAACGGTGGCCGAGCTGAAG
CGAATGATTGAGGGCATACTAAAGGTGCAGCCCGTGGACCAGCGGTTATA
CAATCAGGACAACGATGTCATGGAGGACGACAGCACGTTGCAGGACTACG
GCGTGACGGTGTCCACGGCCAAGGCGCAGGCTCCGGCACAGCTGGGCTTG
ACATTCAGGAACGAGGTGGGCGACTTTGAGACACTGGACATGACACCCTA
CTCGGCACCACCAGACTTACCCGAAGTCATGAAAAACCAAGAGGCCTCGA
ACGGACAGGAGCAGGTGGCATAAAAGCTTTCTAGACCAT

BS18065.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
EloB-RA 357 CG4204-PA 1..357 17..373 1785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
EloB-RA 1207 CG4204-RA 395..751 17..373 1785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20578913..20579059 259..113 735 100 Minus
3R 32079331 3R 20578678..20578794 373..257 585 100 Minus
3R 32079331 3R 20579138..20579233 114..19 480 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:06:12 has no hits.

BS18065.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:19 Download gff for BS18065.complete
Subject Subject Range Query Range Percent Splice Strand
Elongin-B-RA 1..357 17..373 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:03 Download gff for BS18065.complete
Subject Subject Range Query Range Percent Splice Strand
Elongin-B-RA 416..770 17..371 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:16 Download gff for BS18065.complete
Subject Subject Range Query Range Percent Splice Strand
Elongin-B-RA 395..749 17..371 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:20 Download gff for BS18065.complete
Subject Subject Range Query Range Percent Splice Strand
Elongin-B-RA 408..772 8..373 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:53 Download gff for BS18065.complete
Subject Subject Range Query Range Percent Splice Strand
EloB-RA 395..749 17..371 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:53 Download gff for BS18065.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20578680..20578792 259..371 100 <- Minus
3R 20578914..20579058 114..258 100 <- Minus
3R 20579139..20579234 17..113 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:16 Download gff for BS18065.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16404402..16404514 259..371 100 <- Minus
arm_3R 16404636..16404780 114..258 100 <- Minus
arm_3R 16404861..16404956 17..113 98   Minus

BS18065.3prime Sequence

387 bp (387 high quality bases) assembled on 2007-06-06

> BS18065.3prime
ATGGTCTAGAAAGCTTTTATGCCACCTGCTCCTGTCCGTTCGAGGCCTCT
TGGTTTTTCATGACTTCGGGTAAGTCTGGTGGTGCCGAGTAGGGTGTCAT
GTCCAGTGTCTCAAAGTCGCCCACCTCGTTCCTGAATGTCAAGCCCAGCT
GTGCCGGAGCCTGCGCCTTGGCCGTGGACACCGTCACGCCGTAGTCCTGC
AACGTGCTGTCGTCCTCCATGACATCGTTGTCCTGATTGTATAACCGCTG
GTCCACGGGCTGCACCTTTAGTATGCCCTCAATCATTCGCTTCAGCTCGG
CCACCGTTGTGTTCTCCTTGGCGTCCGTGAAGATGGTGGTCTTTTGCCGC
CTGATCATAAGGAACACGTCCATGTCGACTGATAACT

BS18065.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4204-PA 357 Elongin-B-RA 1..357 373..17 1785 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
EloB-RA 1207 CG4204-RA 395..751 373..17 1785 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20578913..20579059 131..277 735 100 Plus
3R 32079331 3R 20578678..20578794 17..133 585 100 Plus
3R 32079331 3R 20579138..20579233 276..371 480 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:48:45 has no hits.

BS18065.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:05:40 Download gff for BS18065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4204-PA 1..357 17..373 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:04:00 Download gff for BS18065.3prime
Subject Subject Range Query Range Percent Splice Strand
Elongin-B-RA 387..751 17..382 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:59 Download gff for BS18065.3prime
Subject Subject Range Query Range Percent Splice Strand
EloB-RA 387..751 17..382 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:59 Download gff for BS18065.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20578678..20578792 17..131 100 <- Plus
3R 20578914..20579058 132..276 100 <- Plus
3R 20579139..20579242 277..382 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:04:00 Download gff for BS18065.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16404400..16404514 17..131 100 <- Plus
arm_3R 16404636..16404780 132..276 100 <- Plus
arm_3R 16404861..16404964 277..382 95   Plus

BS18065.5prime Sequence

387 bp (387 high quality bases) assembled on 2007-06-06

> BS18065.5prime
GAAGTTATCAGTCGACATGGACGTGTTCCTTATGATCAGGCGGCAAAAGA
CCACCATCTTCACGGACGCCAAGGAGAACACAACGGTGGCCGAGCTGAAG
CGAATGATTGAGGGCATACTAAAGGTGCAGCCCGTGGACCAGCGGTTATA
CAATCAGGACAACGATGTCATGGAGGACGACAGCACGTTGCAGGACTACG
GCGTGACGGTGTCCACGGCCAAGGCGCAGGCTCCGGCACAGCTGGGCTTG
ACATTCAGGAACGAGGTGGGCGACTTTGAGACACTGGACATGACACCCTA
CTCGGCACCACCAGACTTACCCGAAGTCATGAAAAACCAAGAGGCCTCGA
ACGGACAGGAGCAGGTGGCATAAAAGCTTTCTAGACC

BS18065.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4204-PA 357 Elongin-B-RA 1..357 17..373 1785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
EloB-RA 1207 CG4204-RA 395..751 17..373 1785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20578913..20579059 259..113 735 100 Minus
3R 32079331 3R 20578678..20578794 373..257 585 100 Minus
3R 32079331 3R 20579138..20579233 114..19 480 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:47:24 has no hits.

BS18065.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:05:45 Download gff for BS18065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4204-PA 1..357 17..373 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:57:52 Download gff for BS18065.5prime
Subject Subject Range Query Range Percent Splice Strand
Elongin-B-RA 387..751 8..373 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:34:00 Download gff for BS18065.5prime
Subject Subject Range Query Range Percent Splice Strand
EloB-RA 387..751 8..373 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:34:00 Download gff for BS18065.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20578678..20578792 259..373 100 <- Minus
3R 20578914..20579058 114..258 100 <- Minus
3R 20579139..20579242 8..113 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:57:52 Download gff for BS18065.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16404400..16404514 259..373 100 <- Minus
arm_3R 16404636..16404780 114..258 100 <- Minus
arm_3R 16404861..16404964 8..113 95   Minus

BS18065.pep Sequence

Translation from 16 to 372

> BS18065.pep
MDVFLMIRRQKTTIFTDAKENTTVAELKRMIEGILKVQPVDQRLYNQDND
VMEDDSTLQDYGVTVSTAKAQAPAQLGLTFRNEVGDFETLDMTPYSAPPD
LPEVMKNQEASNGQEQVA*

BS18065.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
EloB-PA 118 CG4204-PA 1..118 1..118 598 100 Plus