Clone Sequence Records
BS18065.complete Sequence
389 bp assembled on 2010-02-09
GenBank Submission: KX806123
> BS18065.complete
GAAGTTATCAGTCGACATGGACGTGTTCCTTATGATCAGGCGGCAAAAGA
CCACCATCTTCACGGACGCCAAGGAGAACACAACGGTGGCCGAGCTGAAG
CGAATGATTGAGGGCATACTAAAGGTGCAGCCCGTGGACCAGCGGTTATA
CAATCAGGACAACGATGTCATGGAGGACGACAGCACGTTGCAGGACTACG
GCGTGACGGTGTCCACGGCCAAGGCGCAGGCTCCGGCACAGCTGGGCTTG
ACATTCAGGAACGAGGTGGGCGACTTTGAGACACTGGACATGACACCCTA
CTCGGCACCACCAGACTTACCCGAAGTCATGAAAAACCAAGAGGCCTCGA
ACGGACAGGAGCAGGTGGCATAAAAGCTTTCTAGACCAT
BS18065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloB-RA | 357 | CG4204-PA | 1..357 | 17..373 | 1785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloB-RA | 1207 | CG4204-RA | 395..751 | 17..373 | 1785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20578913..20579059 | 259..113 | 735 | 100 | Minus |
3R | 32079331 | 3R | 20578678..20578794 | 373..257 | 585 | 100 | Minus |
3R | 32079331 | 3R | 20579138..20579233 | 114..19 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:06:12 has no hits.
BS18065.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:19 Download gff for
BS18065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-B-RA | 1..357 | 17..373 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:03 Download gff for
BS18065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-B-RA | 416..770 | 17..371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:16 Download gff for
BS18065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-B-RA | 395..749 | 17..371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:20 Download gff for
BS18065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-B-RA | 408..772 | 8..373 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:53 Download gff for
BS18065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EloB-RA | 395..749 | 17..371 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:53 Download gff for
BS18065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20578680..20578792 | 259..371 | 100 | <- | Minus |
3R | 20578914..20579058 | 114..258 | 100 | <- | Minus |
3R | 20579139..20579234 | 17..113 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:16 Download gff for
BS18065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16404402..16404514 | 259..371 | 100 | <- | Minus |
arm_3R | 16404636..16404780 | 114..258 | 100 | <- | Minus |
arm_3R | 16404861..16404956 | 17..113 | 98 | | Minus |
BS18065.3prime Sequence
387 bp (387 high quality bases) assembled on 2007-06-06
> BS18065.3prime
ATGGTCTAGAAAGCTTTTATGCCACCTGCTCCTGTCCGTTCGAGGCCTCT
TGGTTTTTCATGACTTCGGGTAAGTCTGGTGGTGCCGAGTAGGGTGTCAT
GTCCAGTGTCTCAAAGTCGCCCACCTCGTTCCTGAATGTCAAGCCCAGCT
GTGCCGGAGCCTGCGCCTTGGCCGTGGACACCGTCACGCCGTAGTCCTGC
AACGTGCTGTCGTCCTCCATGACATCGTTGTCCTGATTGTATAACCGCTG
GTCCACGGGCTGCACCTTTAGTATGCCCTCAATCATTCGCTTCAGCTCGG
CCACCGTTGTGTTCTCCTTGGCGTCCGTGAAGATGGTGGTCTTTTGCCGC
CTGATCATAAGGAACACGTCCATGTCGACTGATAACT
BS18065.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:05:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4204-PA | 357 | Elongin-B-RA | 1..357 | 373..17 | 1785 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloB-RA | 1207 | CG4204-RA | 395..751 | 373..17 | 1785 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20578913..20579059 | 131..277 | 735 | 100 | Plus |
3R | 32079331 | 3R | 20578678..20578794 | 17..133 | 585 | 100 | Plus |
3R | 32079331 | 3R | 20579138..20579233 | 276..371 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:48:45 has no hits.
BS18065.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:05:40 Download gff for
BS18065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4204-PA | 1..357 | 17..373 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:04:00 Download gff for
BS18065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-B-RA | 387..751 | 17..382 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:59 Download gff for
BS18065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EloB-RA | 387..751 | 17..382 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:59 Download gff for
BS18065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20578678..20578792 | 17..131 | 100 | <- | Plus |
3R | 20578914..20579058 | 132..276 | 100 | <- | Plus |
3R | 20579139..20579242 | 277..382 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:04:00 Download gff for
BS18065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16404400..16404514 | 17..131 | 100 | <- | Plus |
arm_3R | 16404636..16404780 | 132..276 | 100 | <- | Plus |
arm_3R | 16404861..16404964 | 277..382 | 95 | | Plus |
BS18065.5prime Sequence
387 bp (387 high quality bases) assembled on 2007-06-06
> BS18065.5prime
GAAGTTATCAGTCGACATGGACGTGTTCCTTATGATCAGGCGGCAAAAGA
CCACCATCTTCACGGACGCCAAGGAGAACACAACGGTGGCCGAGCTGAAG
CGAATGATTGAGGGCATACTAAAGGTGCAGCCCGTGGACCAGCGGTTATA
CAATCAGGACAACGATGTCATGGAGGACGACAGCACGTTGCAGGACTACG
GCGTGACGGTGTCCACGGCCAAGGCGCAGGCTCCGGCACAGCTGGGCTTG
ACATTCAGGAACGAGGTGGGCGACTTTGAGACACTGGACATGACACCCTA
CTCGGCACCACCAGACTTACCCGAAGTCATGAAAAACCAAGAGGCCTCGA
ACGGACAGGAGCAGGTGGCATAAAAGCTTTCTAGACC
BS18065.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4204-PA | 357 | Elongin-B-RA | 1..357 | 17..373 | 1785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloB-RA | 1207 | CG4204-RA | 395..751 | 17..373 | 1785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20578913..20579059 | 259..113 | 735 | 100 | Minus |
3R | 32079331 | 3R | 20578678..20578794 | 373..257 | 585 | 100 | Minus |
3R | 32079331 | 3R | 20579138..20579233 | 114..19 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:47:24 has no hits.
BS18065.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:05:45 Download gff for
BS18065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4204-PA | 1..357 | 17..373 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:57:52 Download gff for
BS18065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-B-RA | 387..751 | 8..373 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:34:00 Download gff for
BS18065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EloB-RA | 387..751 | 8..373 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:34:00 Download gff for
BS18065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20578678..20578792 | 259..373 | 100 | <- | Minus |
3R | 20578914..20579058 | 114..258 | 100 | <- | Minus |
3R | 20579139..20579242 | 8..113 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:57:52 Download gff for
BS18065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16404400..16404514 | 259..373 | 100 | <- | Minus |
arm_3R | 16404636..16404780 | 114..258 | 100 | <- | Minus |
arm_3R | 16404861..16404964 | 8..113 | 95 | | Minus |
BS18065.pep Sequence
Translation from 16 to 372
> BS18065.pep
MDVFLMIRRQKTTIFTDAKENTTVAELKRMIEGILKVQPVDQRLYNQDND
VMEDDSTLQDYGVTVSTAKAQAPAQLGLTFRNEVGDFETLDMTPYSAPPD
LPEVMKNQEASNGQEQVA*
BS18065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloB-PA | 118 | CG4204-PA | 1..118 | 1..118 | 598 | 100 | Plus |