Clone Sequence Records
BS18067.complete Sequence
1928 bp assembled on 2009-12-07
GenBank Submission: KX802186
> BS18067.complete
GAAGTTATCAGTCGACATGCCGAGCCAAGAGGAAAATGAGTTGTACATGG
TCAAGGAGGCGCAAAGACTCCGGAAAAGCGATCCTTGCGCGGCCATGGCC
TGGATTATCACAGCTAAAACTTTATATCCCAATGCATTCAACCTGCAATA
CGAGGCTTATCTACTGGAACGCGATGCTCAGAATTATGAGGAGGCAGCAA
AGTGTTTCAGTGCTATAGCCACCAATTTCCAGAATCAACATACGGAGCTG
TGGCAGGAGATCAACTCCCTAACAAATGCCCTCAGAAATGAGAATGAAAC
TACGCCGGAACACGAGTTCTATGTAAAAATGTACAAGCACCTAACTCCGG
AAGTACAGCACAACATATTCATGCACACCATCAACCACAGTGCCGATAAT
CTGGAGCGCATCTATATCTACATACTGATGTTCAACAAGTTTCCCAAATC
AGCCATAACTCAGGCTCCCAGGCTACTGGAAATGCTGGCGGAGGGCATGA
AAACCGAACCGGATCTCTATCAGCGGATTCTGGTGGAGGAGGTATTGCCC
ATGATCCAGAATAAGCCCCCGGAACTTTCGCCAAATCTGGCCTGCAGACT
TTATACCAGTTCCTTGGAGTTTTATTTGCGGCAAATAATGGATGAATCGG
ATACAGCAGATGCCTGGAAGAACATCTTTAAAGTGCTGATGATCTGCGGT
CAGATGATGGGCTGGGAGCCCTTCCTGCCCTTCAGCAAGCATGTCAACCA
GAACGTCTACTGGGAAAAGCTGGTGGACATACTTTCCGGCAGTCCTGCGG
GCAGCTCCCAGGTTTTGTTCTACGCCACCACCTTGTTCATTTACTCCCTT
CATGGTTATATACGAAATTGTAAGCTGAGGATCGAGGATGCCGATGTAAC
TCATGTTTTGGTAGAAGGATTCATGGAATGGTCGCCGGAAGGTGATGGCT
CCGAAGTGCCCAGCATGGAGCCACCGAAATTCTCCCTGACCACGGCCATA
AGTCCAGAGTTATCCAAGGCCTTCCTACACGCCGCCCAGTGCTGGCAGCT
GCTCAATACGGATCAGTTCCAAAGGGATTTCAGTCAACTTATGCTGGCTC
TTCCCTTGGCGCCTTGGATCTCAAGATTCCTCTTCGACTTGGCCATATAT
TTCGGACACCGGGATGAGGCCAACAAGCTTATGGCGGACATGACCACCCA
GAGCAGTCTGGTGCAAAGCCTGCAGATCTTGAGCCTTAATCTAATGCAAG
GCAGCATGACGCTCCAGGGCTTCCAGTGCATTTTAAAGATCCTGTCAGAA
CTCCCCACCACCCAGGGTCAACTTTTGGAGAATATGTCGCTGAAGGGCCA
CAGGCACATGGTTTTTCTGCCCCTCACTCGATCAGCGTTGGTTCAGTACT
GCGTGGGAGCCATCATCAGCAGACTGAGTCGCAAGGTCTTCGAACCGAAC
GTTCCAGATCGATTGCTAGGGGATATCCTAGTGCTGCAGCAACTTAATCT
ACTCAACGATGTTCTGCTCACTCAACAGATATTTAACCTGATCAAGCAAC
GGAAATCGTTCAATCTGCGCACCCTATCCACCTACATTATTAATATCGAT
TTGCTCGAGGAACTCTCGCACATTTGGAACTCCCAGCAGGAGGATAACTT
TGAGTTGACCAGCTCGCCAAATTCGAGTGGCACACCTACTGCGACCACTG
TAGCTGGTGGTTCCCAAAGCCGAAGAATTGGCACCCGTGGAGCGGACAAA
GGAGCCCGAGATGAATTCAGGGCGATAACACGCCAGCAGATTGCCCGCTG
CAATGAGAACGTGATCACTTTGCTTGCGAATTTCATTAACCAAGAACACT
TGATGCTGGCGCAGCACATCTTTGGAATCAGTCAGCCCGTGGAGACGATT
GTGATTAAGTGAAAGCTTTCTAGACCAT
BS18067.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:01:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS10-RA | 1896 | CG1120-PA | 1..1896 | 17..1912 | 9480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:01:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS10-RA | 2272 | CG1120-RA | 101..2000 | 15..1914 | 9500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:01:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3807065..3808109 | 217..1261 | 5225 | 100 | Plus |
| 3L | 28110227 | 3L | 3808165..3808818 | 1261..1914 | 3270 | 100 | Plus |
| 3L | 28110227 | 3L | 3806810..3807011 | 15..216 | 1010 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:01:06 has no hits.
BS18067.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:30 Download gff for
BS18067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1120-RA | 99..1993 | 17..1911 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:44 Download gff for
BS18067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS10-RA | 103..1997 | 17..1911 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:55 Download gff for
BS18067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1120-RA | 99..1993 | 17..1911 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:04 Download gff for
BS18067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS10-RA | 103..1997 | 17..1911 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:04 Download gff for
BS18067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3806812..3807011 | 17..216 | 100 | -> | Plus |
| 3L | 3807065..3808109 | 217..1261 | 100 | -> | Plus |
| 3L | 3808166..3808815 | 1262..1911 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:44 Download gff for
BS18067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3806812..3807011 | 17..216 | 100 | -> | Plus |
| arm_3L | 3807065..3808109 | 217..1261 | 100 | -> | Plus |
| arm_3L | 3808166..3808815 | 1262..1911 | 100 | | Plus |
BS18067.3prime Sequence
792 bp (773 high quality bases) assembled on 2007-06-06
> BS18067.3prime
ATGGTCTAGAAAGCTTTCACTTAATCACAATCGTCTCCACGGGCTGACTG
ATTCCAAAGATGTGCTGCGCCAGCATCAAGTGTTCTTGGTTAATGAAATT
CGCAAGCAAAGTGATCACGTTCTCATTGCAGCGGGCAATCTGCTGGCGTG
TTATCGCCCTGAATTCATCTCGGGCTCCTTTGTCCGCTCCACGGGTGCCA
ATTCTTCGGCTTTGGGAACCACCAGCTACAGTGGTCGCAGTAGGTGTGCC
ACTCGAATTTGGCGAGCTGGTCAACTCAAAGTTATCCTCCTGCTGGGAGT
TCCAAATGTGCGAGAGTTCCTCGAGCAAATCGATATTAATAATGTAGGTG
GATAGGGTGCGCAGATTGAACGATTTCCGTTGCTTGATCAGGTTAAATAT
CTGTTGAGTGAGCAGAACATCGTTGAGTAGATTAAGTTGCTGCAGCACTA
GGATATCCCCTAGCAATCGATCTGGAACGTTCGGTTCGAAGACCTTGCGA
CTCAGTCTGCTGATGATGGCTCCCACGCAGTACTGAACCAACGCTGATCG
AGTGAGGGGCAGAAAAACCATGTGCCTGTGGCCCTTCAGCGACATATTCT
CCAAAAGTTGACCCTGGGTGGTGGGGAGTTCTGACAGGATCTTTAAAATG
CACTGGAAGCCCTGGAGCGTCATGCTGCCTTGCATTAGATTAAGGCTCAA
GATCTGCAGGCTTTGCACCAGACTGCTCTGGGTGGTCATGTCCGCCATAA
GCTTGTTGGCCTCATCCCGGTGTCCGAAATATATGGCCAAGT
BS18067.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1120-PA | 1896 | CG1120-RA | 1121..1896 | 792..17 | 3880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS10-RA | 2272 | CG1120-RA | 1223..2000 | 792..15 | 3890 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3808165..3808818 | 668..15 | 3270 | 100 | Minus |
| 3L | 28110227 | 3L | 3807985..3808109 | 792..668 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:30:15 has no hits.
BS18067.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:03 Download gff for
BS18067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1120-PA | 1121..1896 | 17..792 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:41 Download gff for
BS18067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS10-RA | 1223..2007 | 6..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:32 Download gff for
BS18067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS10-RA | 1223..2007 | 6..792 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:32 Download gff for
BS18067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3807985..3808109 | 668..792 | 100 | -> | Minus |
| 3L | 3808166..3808825 | 6..667 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:41 Download gff for
BS18067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3807985..3808109 | 668..792 | 100 | -> | Minus |
| arm_3L | 3808166..3808825 | 6..667 | 99 | | Minus |
BS18067.5prime Sequence
866 bp (744 high quality bases) assembled on 2007-06-06
> BS18067.5prime
GAAGTTATCAGTCGACATGCCGAGCCAAGAGGAAAATGAGTTGTACATGG
TCAAGGAGGCGCAAAGACTCCGGAAAAGCGATCCTTGCGCGGCCATGGCC
TGGATTATCACAGCTAAAACTTTATATCCCAATGCATTCAACCTGCAATA
CGAGGCTTATCTACTGGAACGCGATGCTCAGAATTATGAGGAGGCAGCAA
AGTGTTTCAGTGCTATAGCCACCAATTTCCAGAATCAACATACGGAGCTG
TGGCAGGAGATCAACTCCCTAACAAATGCCCTCAGAAATGAGAATGAAAC
TACGCCGGAACACGAGTTCTATGTAAAAATGTACAAGCACCTAACTCCGG
AAGTACAGCACAACATATTCATGCACACCATCAACCACAGTGCCGATAAT
CTGGAGCGCATCTATATCTACATACTGATGTTCAACAAGTTTCCCAAATC
AGCCATAACTCAGGCTCCCAGGCTACTGGAAATGCTGGCGGAGGGCATGA
AAACCGAACCGGATCTCTATCAGCGGATTCTGGTGGAGGAGGTATTGCCC
ATGATCCAGAATAAGCCCCCGGAACTTTCGCCAAATCTGGCCTGCAGACT
TTATACCAGTTCCTTGGAGTTTTATTTGCGGCAAATAATGGATGAATCGG
ATACAGCAGATGCCTGGAAGAACATCTTTAAAGTGCTGATGATCTGCGGT
CAGATGATGGGCTGGGAGCCCTTCCTGCCCTTCAGCAAGCATGTCAACCA
GAACGTCTACTGAGAAAAGCTGGTGGACATACTTTCCGGCAGTCCTGCGG
GCAGCTCCCAGGTTTTGTTCTACGCCACCACCTTGTTCATTTACTCCCTT
CATGGGTATATACGAA
BS18067.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1120-PA | 1896 | CG1120-RA | 1..850 | 17..866 | 4200 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS10-RA | 2272 | CG1120-RA | 101..952 | 15..866 | 4230 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3807065..3807714 | 217..866 | 3220 | 99.7 | Plus |
| 3L | 28110227 | 3L | 3806810..3807011 | 15..216 | 1010 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:33:20 has no hits.
BS18067.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:08 Download gff for
BS18067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1120-PA | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:04:12 Download gff for
BS18067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS10-RA | 97..952 | 10..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:22 Download gff for
BS18067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS10-RA | 97..952 | 10..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:22 Download gff for
BS18067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3806806..3807011 | 10..216 | 98 | -> | Plus |
| 3L | 3807065..3807714 | 217..866 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:04:12 Download gff for
BS18067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3806806..3807011 | 10..216 | 98 | -> | Plus |
| arm_3L | 3807065..3807714 | 217..866 | 99 | | Plus |
BS18067.pep Sequence
Translation from 16 to 1911
> BS18067.pep
MPSQEENELYMVKEAQRLRKSDPCAAMAWIITAKTLYPNAFNLQYEAYLL
ERDAQNYEEAAKCFSAIATNFQNQHTELWQEINSLTNALRNENETTPEHE
FYVKMYKHLTPEVQHNIFMHTINHSADNLERIYIYILMFNKFPKSAITQA
PRLLEMLAEGMKTEPDLYQRILVEEVLPMIQNKPPELSPNLACRLYTSSL
EFYLRQIMDESDTADAWKNIFKVLMICGQMMGWEPFLPFSKHVNQNVYWE
KLVDILSGSPAGSSQVLFYATTLFIYSLHGYIRNCKLRIEDADVTHVLVE
GFMEWSPEGDGSEVPSMEPPKFSLTTAISPELSKAFLHAAQCWQLLNTDQ
FQRDFSQLMLALPLAPWISRFLFDLAIYFGHRDEANKLMADMTTQSSLVQ
SLQILSLNLMQGSMTLQGFQCILKILSELPTTQGQLLENMSLKGHRHMVF
LPLTRSALVQYCVGAIISRLSRKVFEPNVPDRLLGDILVLQQLNLLNDVL
LTQQIFNLIKQRKSFNLRTLSTYIINIDLLEELSHIWNSQQEDNFELTSS
PNSSGTPTATTVAGGSQSRRIGTRGADKGARDEFRAITRQQIARCNENVI
TLLANFINQEHLMLAQHIFGISQPVETIVIK*
BS18067.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:17:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS10-PA | 631 | CG1120-PA | 1..631 | 1..631 | 3266 | 100 | Plus |
