Clone Sequence Records
BS18068.complete Sequence
1496 bp assembled on 2009-12-07
GenBank Submission: KX803070
> BS18068.complete
GAAGTTATCAGTCGACATGCTTACGCTGCAAATTTTTGAGGCATTTGCAA
TCATTTTATGTGTATACTTTCTATGGAGTCGAAGAAGATTTTATATTATG
ATGCTAAAGTTACCAGGACCAATGGGCTTTCCGTTTATCGGACTTGCCTT
TGAGTACATTCGCCTAAAACGTAAGATACGCCTACGTACCATTTTATTTA
AAATATATGGAAAAACGGTATTGACTTGGATTGGCTTAACTCCCGTCCTG
GTGACCTGTGAACCTAAGATCCTTGAGGACATTTTCACGTCTCCCAATTG
CAGCAACAGGAGTTCTGTGGTGGACAAGGCCATTTCATCATGTTTAGGAC
TGGGCCTTCTGACCCTAAAGAATAATCATTGGAATGAACGACGAAAACTT
TTGTTACCATCGTTTAAGAATAATGCTGTTCTAAGTTTTGTGCCAGTTTT
AAACAATGAAGCCAATTTCCTGGTGACCTTACTCGCGGAATTTGTCGATG
GGGGAGATATAAACTTACTTCCAGAACTCAATAAATGGTCATTCAAAATA
GCCGCTCAAATTACTATGGGTGATGAAGTGAGAAATCAAGCGAACTACCA
GAACGGAAATCTTTTGGAAAGCTACAAGGCCCTTAACAACCTAATACCCA
TTGGTGTTGTAATGCCTTGGCTCAGGAACAAGTATCTTGGAAAGCTATTT
AGCTATGAAAAACGACGACTAGAGGCCGCAACGCAGTCAAATGCATTCAT
CAAAGACATAATAGACAAAAAGCTGAGTAGCACAGATAATAGCTCAGAAC
CGGCACTAATTGACCGCATTCTCAATCTTGTGAGAATCGGAGAACTTTCT
TATGACGACGTAATGGGGGAATTTTCTAATATCATATTTGCCGCATCCGA
TACTTTATCTATAACAGTCAACAATGTGCTTATCCTGATGGCAATGTTTC
CTAAATACCAGGATAATGTATTTGAGGAGCTAGCAGAGGTGTTTCCTTCA
GGAGGAGAATTCGAAGCCAGTCATGCGGATCTGGAGAAATTAGTGAAGCT
GGATCGAGTTTTGCATGAGACTATGCGTTTAATACCGGCCGTTCCATTAC
TGATAAGGCAAACTTCCCATTCTATTCAACTATCAAACGGATTTTATATT
CCAGAAGGCGTAACCTTAATGATAGACATTTTTCACACTCATCGTAATAA
GGATATCTGGGGACCACAGGCTAATGCATTTAATCCCGATAACTTTCTGC
CTGAAAATAAGCGAGCAAGGCCACCTTATTCCTATTTACCTTTTTCGAAG
GGGAAGAAAACATGCTTAGGTTGGAAACTCTCGCTGATATCTGCAAAGCT
AGCTCTAGCTAAAATATTACGAAATTATATGCTGAGTACCACCTTTTTGT
ACAAGGACCTTAGGTTTATAGACAATACCACTATGAAGCTGGCTGAGCAA
CCATTACTAGCAGTGAAACGTAGAATATAAAAGCTTTCTAGACCAT
BS18068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:50:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp313a5-RA | 1464 | CG15807-PA | 1..1464 | 17..1480 | 7305 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp313a5-RA | 1561 | CG15807-RA | 38..1501 | 17..1480 | 7305 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12233059..12233630 | 1329..758 | 2830 | 99.7 | Minus |
3R | 32079331 | 3R | 12234233..12234437 | 375..171 | 995 | 99 | Minus |
3R | 32079331 | 3R | 12233992..12234177 | 557..372 | 930 | 100 | Minus |
3R | 32079331 | 3R | 12232854..12233019 | 1480..1315 | 830 | 100 | Minus |
3R | 32079331 | 3R | 12234489..12234647 | 175..17 | 795 | 100 | Minus |
3R | 32079331 | 3R | 12233685..12233811 | 757..631 | 635 | 100 | Minus |
3R | 32079331 | 3R | 12233869..12233941 | 630..558 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:50:26 has no hits.
BS18068.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:03 Download gff for
BS18068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313a5-RA | 38..1499 | 17..1478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:14 Download gff for
BS18068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313a5-RA | 38..1499 | 17..1478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:58 Download gff for
BS18068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313a5-RA | 38..1499 | 17..1478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:02 Download gff for
BS18068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313a5-RA | 38..1499 | 17..1478 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:02 Download gff for
BS18068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12232856..12233014 | 1320..1478 | 100 | <- | Minus |
3R | 12233069..12233630 | 758..1319 | 100 | <- | Minus |
3R | 12233685..12233811 | 631..757 | 100 | <- | Minus |
3R | 12233869..12233941 | 558..630 | 100 | <- | Minus |
3R | 12233992..12234177 | 372..557 | 100 | <- | Minus |
3R | 12234237..12234437 | 171..371 | 99 | <- | Minus |
3R | 12234494..12234647 | 17..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:14 Download gff for
BS18068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8058578..8058736 | 1320..1478 | 100 | <- | Minus |
arm_3R | 8058791..8059352 | 758..1319 | 100 | <- | Minus |
arm_3R | 8059407..8059533 | 631..757 | 100 | <- | Minus |
arm_3R | 8059591..8059663 | 558..630 | 100 | <- | Minus |
arm_3R | 8059714..8059899 | 372..557 | 100 | <- | Minus |
arm_3R | 8059959..8060159 | 171..371 | 99 | <- | Minus |
arm_3R | 8060216..8060369 | 17..170 | 100 | | Minus |
BS18068.3prime Sequence
872 bp (803 high quality bases) assembled on 2007-06-06
> BS18068.3prime
CCTGAGGGGGCGCCAAACGAATGGTCTANAAAGCTTTTATATCCTACGTG
TCACTGCTAGTAATGGTTGCTCAGCCAGCTTCATAGTGGTATTGTCTATA
AACCTAAGGTCCTTGTACAAAAAGGTGGTACTCAGCATATAATTTCGTAA
TATTTTAGCTAGAGCTAGCTTTGCAGATATCAGCGAGAGTTTCCAACCTA
AGCATGTTTTCTTCCCCTTCGAAAAAGGTAAATAGGAATAAGGTGGCCTT
GCTCGCTTATTTTCAGGCAGAAAGTTATCGGGATTAAATGCATTAGCCTG
TGGTCCCCAGATATCCTTATTACGATGAGTGTGAAAAATGTCTATCATTA
AGGTTACGCCTTCTGGAATATAAAATCCGTTTGATAGTTGAATAGAATGG
GAAGTTTGCCTTATCAGTAATGGAACGGCCGGTATTAAACGCATAGTCTC
ATGCAAAACTCGATCCAGCTTCACTAATTTCTCCAGATCCGCATGACTGG
CTTCGAATTCTCCTCCTGAAGGAAACACCTCTGCTAGCTCCTCAAATACA
TTATCCTGGTATTTAGGAAACATTGCCATCAGGATAAGCACATTGTTGAC
TGTTATAGATAAAGTATCGGATGCGGCAAATATGATATTAGAAAATTCCC
CCATTACGTCGTCATAAGAAAGTTCTCCGATTCTCACAAGATTGAGAATG
CGGTCAATTAGTGCCGGTTCTGAGCTATTATCTGTGCTACTCAGCTTTTT
GTCTATTATGTCTTTGATGAATGCATTTGACTGCGTTGCGGCCTCTAGTC
GTCGTTTTTCATAGCTAAATAGCTTTCCAAGATACTTTGTCCTGAGCAAA
GGCATACAACACCAATGGGTAT
BS18068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15807-PA | 1464 | Cyp313a5-RA | 646..1464 | 855..37 | 3970 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:16:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp313a5-RA | 1561 | CG15807-RA | 665..1501 | 872..37 | 4085 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:16:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12233059..12233630 | 188..759 | 2830 | 99.7 | Plus |
3R | 32079331 | 3R | 12232854..12233019 | 37..202 | 800 | 98.8 | Plus |
3R | 32079331 | 3R | 12233685..12233798 | 760..872 | 475 | 96.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:16:40 has no hits.
BS18068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:13 Download gff for
BS18068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15807-PA | 628..1464 | 37..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:59 Download gff for
BS18068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313a5-RA | 665..1506 | 30..872 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:28 Download gff for
BS18068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313a5-RA | 665..1506 | 30..872 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:26:28 Download gff for
BS18068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12232842..12233014 | 24..197 | 94 | <- | Plus |
3R | 12233685..12233798 | 760..872 | 96 | | Plus |
3R | 12233069..12233630 | 198..759 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:59 Download gff for
BS18068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8058564..8058736 | 24..197 | 94 | <- | Plus |
arm_3R | 8058791..8059352 | 198..759 | 100 | <- | Plus |
arm_3R | 8059407..8059520 | 760..872 | 96 | | Plus |
BS18068.5prime Sequence
874 bp (805 high quality bases) assembled on 2007-06-06
> BS18068.5prime
GAAGTTATCCCTCGAGGTGCTTACGCTGCAAATTTTTGAGGCATTTGCAA
TCATTTTATGTGTATACTTTCTATGGAGTCGAAGAAGATTTTATATTATG
ATGCTAAAGTTACCAGGACCAATGGGCTTTCCGTTTATCGGACTTGCCTT
TGAGTACATTCGCCTAAAACGTAAGATACGCCTACGTACCATTTTATTTA
AAATATATGGAAAAACGGTATTGACTTGGATTGGCTTAACTCCCGTCCTG
GTGACCTGTGAACCTAAGATCCTTGAGGACATTTTCACGTCTCCCAATTG
CAGCAACAGGAGTTCTGTGGTGGACAAGGCCATTTCATCATGTTTAGGAC
TGGGCCTTCTGACCCTAAAGAATAATCATTGGAATGAACGACGAAAACTT
TTGTTACCATCGTTTAAGAATAATGCTGTTCTAAGTTTTGTGCCAGTTTT
AAACAATGAAGCCAATTTCCTGGTGACCTTACTCGCGGAATTTGTCGATG
GGGGAGATATAAACTTACTTCCAGAACTCAATAAATGGTCATTCAAAATA
GCCGCTCAAATTACTATGGGTGATGAAGTGAGAAATCAAGCGAACTACCA
GAACGGAAATCTTTTGGAAAGCTACAAGGCCCTTAACAACCTAATACCCA
TTGGTGTTGTAATGCCTTGGCTCAGGAACAAGTATCTTGGAAAGCTATTT
AGCTATGAAAAACGACGACTAGAGGCCGCAACGCAGTCAAATGCATTCAT
CAAAGACATAATAGACAAAAAGCTGAGTAGCACAGATAATAGCTCAGAAC
CGGCACTAATTGACCGCATTCTCAATCTTGTGAGAATCGGAGAACTTTCT
TATGACGACGTAGTGGGGGAATTT
BS18068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15807-PA | 1464 | Cyp313a5-RA | 2..858 | 18..874 | 4235 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:04:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp313a5-RA | 1561 | CG15807-RA | 39..895 | 18..874 | 4255 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:04:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12234233..12234437 | 375..171 | 995 | 99 | Minus |
3R | 32079331 | 3R | 12233992..12234177 | 557..372 | 930 | 100 | Minus |
3R | 32079331 | 3R | 12234489..12234646 | 175..18 | 790 | 100 | Minus |
3R | 32079331 | 3R | 12233685..12233811 | 757..631 | 635 | 100 | Minus |
3R | 32079331 | 3R | 12233514..12233630 | 874..758 | 570 | 99.1 | Minus |
3R | 32079331 | 3R | 12233869..12233941 | 630..558 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:04:52 has no hits.
BS18068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:19 Download gff for
BS18068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15807-PA | 2..858 | 18..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:57:12 Download gff for
BS18068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313a5-RA | 35..895 | 14..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:25 Download gff for
BS18068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313a5-RA | 35..895 | 14..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:25 Download gff for
BS18068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12234494..12234650 | 14..170 | 98 | | Minus |
3R | 12233685..12233811 | 631..757 | 100 | <- | Minus |
3R | 12233869..12233941 | 558..630 | 100 | <- | Minus |
3R | 12233992..12234177 | 372..557 | 100 | <- | Minus |
3R | 12234237..12234437 | 171..371 | 99 | <- | Minus |
3R | 12233514..12233630 | 758..874 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:57:12 Download gff for
BS18068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8059236..8059352 | 758..874 | 99 | <- | Minus |
arm_3R | 8059407..8059533 | 631..757 | 100 | <- | Minus |
arm_3R | 8059591..8059663 | 558..630 | 100 | <- | Minus |
arm_3R | 8059714..8059899 | 372..557 | 100 | <- | Minus |
arm_3R | 8060216..8060372 | 14..170 | 98 | | Minus |
arm_3R | 8059959..8060159 | 171..371 | 99 | <- | Minus |
BS18068.pep Sequence
Translation from 16 to 1479
> BS18068.pep
MLTLQIFEAFAIILCVYFLWSRRRFYIMMLKLPGPMGFPFIGLAFEYIRL
KRKIRLRTILFKIYGKTVLTWIGLTPVLVTCEPKILEDIFTSPNCSNRSS
VVDKAISSCLGLGLLTLKNNHWNERRKLLLPSFKNNAVLSFVPVLNNEAN
FLVTLLAEFVDGGDINLLPELNKWSFKIAAQITMGDEVRNQANYQNGNLL
ESYKALNNLIPIGVVMPWLRNKYLGKLFSYEKRRLEAATQSNAFIKDIID
KKLSSTDNSSEPALIDRILNLVRIGELSYDDVMGEFSNIIFAASDTLSIT
VNNVLILMAMFPKYQDNVFEELAEVFPSGGEFEASHADLEKLVKLDRVLH
ETMRLIPAVPLLIRQTSHSIQLSNGFYIPEGVTLMIDIFHTHRNKDIWGP
QANAFNPDNFLPENKRARPPYSYLPFSKGKKTCLGWKLSLISAKLALAKI
LRNYMLSTTFLYKDLRFIDNTTMKLAEQPLLAVKRRI*
BS18068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp313a5-PA | 487 | CG15807-PA | 1..487 | 1..487 | 2503 | 100 | Plus |
Cyp313a1-PA | 492 | CG3360-PA | 1..491 | 1..486 | 1201 | 45.8 | Plus |
Cyp313a3-PA | 492 | CG10093-PA | 1..491 | 1..486 | 1200 | 46.6 | Plus |
Cyp313a2-PB | 493 | CG10094-PB | 1..491 | 1..486 | 1120 | 44.4 | Plus |
Cyp313a4-PA | 494 | CG6802-PA | 1..493 | 1..486 | 1052 | 39.1 | Plus |