Clone BS18068 Report

Search the DGRC for BS18068

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCyp313a5-RA
Protein status:BS18068.pep: full length peptide match
Sequenced Size:1496

Clone Sequence Records

BS18068.complete Sequence

1496 bp assembled on 2009-12-07

GenBank Submission: KX803070

> BS18068.complete
GAAGTTATCAGTCGACATGCTTACGCTGCAAATTTTTGAGGCATTTGCAA
TCATTTTATGTGTATACTTTCTATGGAGTCGAAGAAGATTTTATATTATG
ATGCTAAAGTTACCAGGACCAATGGGCTTTCCGTTTATCGGACTTGCCTT
TGAGTACATTCGCCTAAAACGTAAGATACGCCTACGTACCATTTTATTTA
AAATATATGGAAAAACGGTATTGACTTGGATTGGCTTAACTCCCGTCCTG
GTGACCTGTGAACCTAAGATCCTTGAGGACATTTTCACGTCTCCCAATTG
CAGCAACAGGAGTTCTGTGGTGGACAAGGCCATTTCATCATGTTTAGGAC
TGGGCCTTCTGACCCTAAAGAATAATCATTGGAATGAACGACGAAAACTT
TTGTTACCATCGTTTAAGAATAATGCTGTTCTAAGTTTTGTGCCAGTTTT
AAACAATGAAGCCAATTTCCTGGTGACCTTACTCGCGGAATTTGTCGATG
GGGGAGATATAAACTTACTTCCAGAACTCAATAAATGGTCATTCAAAATA
GCCGCTCAAATTACTATGGGTGATGAAGTGAGAAATCAAGCGAACTACCA
GAACGGAAATCTTTTGGAAAGCTACAAGGCCCTTAACAACCTAATACCCA
TTGGTGTTGTAATGCCTTGGCTCAGGAACAAGTATCTTGGAAAGCTATTT
AGCTATGAAAAACGACGACTAGAGGCCGCAACGCAGTCAAATGCATTCAT
CAAAGACATAATAGACAAAAAGCTGAGTAGCACAGATAATAGCTCAGAAC
CGGCACTAATTGACCGCATTCTCAATCTTGTGAGAATCGGAGAACTTTCT
TATGACGACGTAATGGGGGAATTTTCTAATATCATATTTGCCGCATCCGA
TACTTTATCTATAACAGTCAACAATGTGCTTATCCTGATGGCAATGTTTC
CTAAATACCAGGATAATGTATTTGAGGAGCTAGCAGAGGTGTTTCCTTCA
GGAGGAGAATTCGAAGCCAGTCATGCGGATCTGGAGAAATTAGTGAAGCT
GGATCGAGTTTTGCATGAGACTATGCGTTTAATACCGGCCGTTCCATTAC
TGATAAGGCAAACTTCCCATTCTATTCAACTATCAAACGGATTTTATATT
CCAGAAGGCGTAACCTTAATGATAGACATTTTTCACACTCATCGTAATAA
GGATATCTGGGGACCACAGGCTAATGCATTTAATCCCGATAACTTTCTGC
CTGAAAATAAGCGAGCAAGGCCACCTTATTCCTATTTACCTTTTTCGAAG
GGGAAGAAAACATGCTTAGGTTGGAAACTCTCGCTGATATCTGCAAAGCT
AGCTCTAGCTAAAATATTACGAAATTATATGCTGAGTACCACCTTTTTGT
ACAAGGACCTTAGGTTTATAGACAATACCACTATGAAGCTGGCTGAGCAA
CCATTACTAGCAGTGAAACGTAGAATATAAAAGCTTTCTAGACCAT

BS18068.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp313a5-RA 1464 CG15807-PA 1..1464 17..1480 7305 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp313a5-RA 1561 CG15807-RA 38..1501 17..1480 7305 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12233059..12233630 1329..758 2830 99.7 Minus
3R 32079331 3R 12234233..12234437 375..171 995 99 Minus
3R 32079331 3R 12233992..12234177 557..372 930 100 Minus
3R 32079331 3R 12232854..12233019 1480..1315 830 100 Minus
3R 32079331 3R 12234489..12234647 175..17 795 100 Minus
3R 32079331 3R 12233685..12233811 757..631 635 100 Minus
3R 32079331 3R 12233869..12233941 630..558 365 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:50:26 has no hits.

BS18068.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:03 Download gff for BS18068.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp313a5-RA 38..1499 17..1478 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:14 Download gff for BS18068.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp313a5-RA 38..1499 17..1478 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:58 Download gff for BS18068.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp313a5-RA 38..1499 17..1478 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:02 Download gff for BS18068.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp313a5-RA 38..1499 17..1478 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:02 Download gff for BS18068.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12232856..12233014 1320..1478 100 <- Minus
3R 12233069..12233630 758..1319 100 <- Minus
3R 12233685..12233811 631..757 100 <- Minus
3R 12233869..12233941 558..630 100 <- Minus
3R 12233992..12234177 372..557 100 <- Minus
3R 12234237..12234437 171..371 99 <- Minus
3R 12234494..12234647 17..170 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:14 Download gff for BS18068.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8058578..8058736 1320..1478 100 <- Minus
arm_3R 8058791..8059352 758..1319 100 <- Minus
arm_3R 8059407..8059533 631..757 100 <- Minus
arm_3R 8059591..8059663 558..630 100 <- Minus
arm_3R 8059714..8059899 372..557 100 <- Minus
arm_3R 8059959..8060159 171..371 99 <- Minus
arm_3R 8060216..8060369 17..170 100   Minus

BS18068.3prime Sequence

872 bp (803 high quality bases) assembled on 2007-06-06

> BS18068.3prime
CCTGAGGGGGCGCCAAACGAATGGTCTANAAAGCTTTTATATCCTACGTG
TCACTGCTAGTAATGGTTGCTCAGCCAGCTTCATAGTGGTATTGTCTATA
AACCTAAGGTCCTTGTACAAAAAGGTGGTACTCAGCATATAATTTCGTAA
TATTTTAGCTAGAGCTAGCTTTGCAGATATCAGCGAGAGTTTCCAACCTA
AGCATGTTTTCTTCCCCTTCGAAAAAGGTAAATAGGAATAAGGTGGCCTT
GCTCGCTTATTTTCAGGCAGAAAGTTATCGGGATTAAATGCATTAGCCTG
TGGTCCCCAGATATCCTTATTACGATGAGTGTGAAAAATGTCTATCATTA
AGGTTACGCCTTCTGGAATATAAAATCCGTTTGATAGTTGAATAGAATGG
GAAGTTTGCCTTATCAGTAATGGAACGGCCGGTATTAAACGCATAGTCTC
ATGCAAAACTCGATCCAGCTTCACTAATTTCTCCAGATCCGCATGACTGG
CTTCGAATTCTCCTCCTGAAGGAAACACCTCTGCTAGCTCCTCAAATACA
TTATCCTGGTATTTAGGAAACATTGCCATCAGGATAAGCACATTGTTGAC
TGTTATAGATAAAGTATCGGATGCGGCAAATATGATATTAGAAAATTCCC
CCATTACGTCGTCATAAGAAAGTTCTCCGATTCTCACAAGATTGAGAATG
CGGTCAATTAGTGCCGGTTCTGAGCTATTATCTGTGCTACTCAGCTTTTT
GTCTATTATGTCTTTGATGAATGCATTTGACTGCGTTGCGGCCTCTAGTC
GTCGTTTTTCATAGCTAAATAGCTTTCCAAGATACTTTGTCCTGAGCAAA
GGCATACAACACCAATGGGTAT

BS18068.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15807-PA 1464 Cyp313a5-RA 646..1464 855..37 3970 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp313a5-RA 1561 CG15807-RA 665..1501 872..37 4085 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12233059..12233630 188..759 2830 99.7 Plus
3R 32079331 3R 12232854..12233019 37..202 800 98.8 Plus
3R 32079331 3R 12233685..12233798 760..872 475 96.5 Plus
Blast to na_te.dros performed on 2015-02-13 07:16:40 has no hits.

BS18068.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:13 Download gff for BS18068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15807-PA 628..1464 37..872 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:59 Download gff for BS18068.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp313a5-RA 665..1506 30..872 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:28 Download gff for BS18068.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp313a5-RA 665..1506 30..872 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:26:28 Download gff for BS18068.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12232842..12233014 24..197 94 <- Plus
3R 12233685..12233798 760..872 96   Plus
3R 12233069..12233630 198..759 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:59 Download gff for BS18068.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8058564..8058736 24..197 94 <- Plus
arm_3R 8058791..8059352 198..759 100 <- Plus
arm_3R 8059407..8059520 760..872 96   Plus

BS18068.5prime Sequence

874 bp (805 high quality bases) assembled on 2007-06-06

> BS18068.5prime
GAAGTTATCCCTCGAGGTGCTTACGCTGCAAATTTTTGAGGCATTTGCAA
TCATTTTATGTGTATACTTTCTATGGAGTCGAAGAAGATTTTATATTATG
ATGCTAAAGTTACCAGGACCAATGGGCTTTCCGTTTATCGGACTTGCCTT
TGAGTACATTCGCCTAAAACGTAAGATACGCCTACGTACCATTTTATTTA
AAATATATGGAAAAACGGTATTGACTTGGATTGGCTTAACTCCCGTCCTG
GTGACCTGTGAACCTAAGATCCTTGAGGACATTTTCACGTCTCCCAATTG
CAGCAACAGGAGTTCTGTGGTGGACAAGGCCATTTCATCATGTTTAGGAC
TGGGCCTTCTGACCCTAAAGAATAATCATTGGAATGAACGACGAAAACTT
TTGTTACCATCGTTTAAGAATAATGCTGTTCTAAGTTTTGTGCCAGTTTT
AAACAATGAAGCCAATTTCCTGGTGACCTTACTCGCGGAATTTGTCGATG
GGGGAGATATAAACTTACTTCCAGAACTCAATAAATGGTCATTCAAAATA
GCCGCTCAAATTACTATGGGTGATGAAGTGAGAAATCAAGCGAACTACCA
GAACGGAAATCTTTTGGAAAGCTACAAGGCCCTTAACAACCTAATACCCA
TTGGTGTTGTAATGCCTTGGCTCAGGAACAAGTATCTTGGAAAGCTATTT
AGCTATGAAAAACGACGACTAGAGGCCGCAACGCAGTCAAATGCATTCAT
CAAAGACATAATAGACAAAAAGCTGAGTAGCACAGATAATAGCTCAGAAC
CGGCACTAATTGACCGCATTCTCAATCTTGTGAGAATCGGAGAACTTTCT
TATGACGACGTAGTGGGGGAATTT

BS18068.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG15807-PA 1464 Cyp313a5-RA 2..858 18..874 4235 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp313a5-RA 1561 CG15807-RA 39..895 18..874 4255 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12234233..12234437 375..171 995 99 Minus
3R 32079331 3R 12233992..12234177 557..372 930 100 Minus
3R 32079331 3R 12234489..12234646 175..18 790 100 Minus
3R 32079331 3R 12233685..12233811 757..631 635 100 Minus
3R 32079331 3R 12233514..12233630 874..758 570 99.1 Minus
3R 32079331 3R 12233869..12233941 630..558 365 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:04:52 has no hits.

BS18068.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:19 Download gff for BS18068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15807-PA 2..858 18..874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:57:12 Download gff for BS18068.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp313a5-RA 35..895 14..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:25 Download gff for BS18068.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp313a5-RA 35..895 14..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:25 Download gff for BS18068.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12234494..12234650 14..170 98   Minus
3R 12233685..12233811 631..757 100 <- Minus
3R 12233869..12233941 558..630 100 <- Minus
3R 12233992..12234177 372..557 100 <- Minus
3R 12234237..12234437 171..371 99 <- Minus
3R 12233514..12233630 758..874 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:57:12 Download gff for BS18068.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8059236..8059352 758..874 99 <- Minus
arm_3R 8059407..8059533 631..757 100 <- Minus
arm_3R 8059591..8059663 558..630 100 <- Minus
arm_3R 8059714..8059899 372..557 100 <- Minus
arm_3R 8060216..8060372 14..170 98   Minus
arm_3R 8059959..8060159 171..371 99 <- Minus

BS18068.pep Sequence

Translation from 16 to 1479

> BS18068.pep
MLTLQIFEAFAIILCVYFLWSRRRFYIMMLKLPGPMGFPFIGLAFEYIRL
KRKIRLRTILFKIYGKTVLTWIGLTPVLVTCEPKILEDIFTSPNCSNRSS
VVDKAISSCLGLGLLTLKNNHWNERRKLLLPSFKNNAVLSFVPVLNNEAN
FLVTLLAEFVDGGDINLLPELNKWSFKIAAQITMGDEVRNQANYQNGNLL
ESYKALNNLIPIGVVMPWLRNKYLGKLFSYEKRRLEAATQSNAFIKDIID
KKLSSTDNSSEPALIDRILNLVRIGELSYDDVMGEFSNIIFAASDTLSIT
VNNVLILMAMFPKYQDNVFEELAEVFPSGGEFEASHADLEKLVKLDRVLH
ETMRLIPAVPLLIRQTSHSIQLSNGFYIPEGVTLMIDIFHTHRNKDIWGP
QANAFNPDNFLPENKRARPPYSYLPFSKGKKTCLGWKLSLISAKLALAKI
LRNYMLSTTFLYKDLRFIDNTTMKLAEQPLLAVKRRI*

BS18068.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp313a5-PA 487 CG15807-PA 1..487 1..487 2503 100 Plus
Cyp313a1-PA 492 CG3360-PA 1..491 1..486 1201 45.8 Plus
Cyp313a3-PA 492 CG10093-PA 1..491 1..486 1200 46.6 Plus
Cyp313a2-PB 493 CG10094-PB 1..491 1..486 1120 44.4 Plus
Cyp313a4-PA 494 CG6802-PA 1..493 1..486 1052 39.1 Plus