Clone Sequence Records
BS18070.complete Sequence
1025 bp assembled on 2010-02-09
GenBank Submission: KX802587
> BS18070.complete
GAAGTTATCAGTCGACATGAGCGGCAAGCGGACACGTAGCTTTAAGTGCG
CCGTACACCATCGAGATCGTGAAGTCTGCTCCGAAAACGATTTCCAGCTG
GTGCTAAACGAACCGCCACTCTTTCGCAAAATGGTGCACGCCGTGGCCAT
GGAGATCCTGCCCGAGGAGCGGGATCGCAAGTACTACGCCGATCGCTACA
CCTGCTGTCCGCCGCCTTTTTTCATCATCCTGGTTACTCTGGTGGAGCTG
GGTTTCTTTGTTTACCACTCAGTGGTCACGGGTGAGGCGGCGCCAAGGGG
ACCCATACCCTCGGACTCCATGTTCATCTACCGTCCCGATAAGCGTCACG
AGATCTGGCGCTTCCTCTTCTACATGGTACTCCATGCCGGGTGGCTGCAT
CTCGGTTTTAACGTGGCAGTTCAGCTGGTTTTTGGGCTGCCACTGGAGAT
GGTTCATGGTTCCACGAGGATAGCCTGCATCTACTTCTCCGGGGTGCTGG
CGGGAAGCCTGGGCACTAGCATCTTTGACCCGGATGTGTTCCTTGTGGGC
GCCAGTGGTGGAGTATACGCTTTGCTAGCCGCCCACCTGGCCAATGTGCT
TCTCAACTATCACCAGATGCGTTATGGAGTCATCAAGCTGCTTCACATTC
TGGTCTTCGTTTCCTTCGACTTTGGCTTTGCCATCTATGCTCGCTATGCT
GGCGACGAACTGCAGCTGGGATCATCGAGTGAATTCCTGGCCATAGATCA
GGCGGAAACGGCGGGTGCTGTTTCGTATGTGGCCCATTTGGCTGGTGCCA
TTGCTGGCCTAACTATCGGGCTGCTGGTGCTCAAGAGCTTTGAGCAGAAG
CTCCACGAGCAGCTGCTCTGGTGGATCGCCTTGGGAACGTACTTGGCGCT
GGTGGTCTTCGCCATCGCCTTCAACATCATGAATGGATTTGCGATGTTCA
ATATACGCGTGGAGAAGATCCGTGTCACGGAAACCATTTTCAATGATTTC
CAGGTGTGAAAGCTTTCTAGACCAT
BS18070.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:12:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stet-RA | 993 | CG33166-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
stet-RB | 1458 | CG33166-PB | 466..1458 | 17..1009 | 4965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stet-RA | 1898 | CG33166-RA | 170..1165 | 16..1011 | 4980 | 100 | Plus |
stet-RB | 2380 | CG33166-RB | 653..1647 | 17..1011 | 4975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:12:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1476582..1476995 | 659..246 | 2070 | 100 | Minus |
3L | 28110227 | 3L | 1476171..1476523 | 1011..659 | 1765 | 100 | Minus |
3L | 28110227 | 3L | 1477050..1477287 | 254..17 | 1160 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:12:05 has no hits.
BS18070.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:07 Download gff for
BS18070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RA | 161..1152 | 17..1008 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:41 Download gff for
BS18070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RA | 171..1162 | 17..1008 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:17 Download gff for
BS18070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RA | 161..1152 | 17..1008 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:06 Download gff for
BS18070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RA | 171..1162 | 17..1008 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:06 Download gff for
BS18070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1476174..1476522 | 660..1008 | 100 | <- | Minus |
3L | 1476582..1476993 | 248..659 | 100 | <- | Minus |
3L | 1477057..1477287 | 17..247 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:41 Download gff for
BS18070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1477057..1477287 | 17..247 | 100 | | Minus |
arm_3L | 1476174..1476522 | 660..1008 | 100 | <- | Minus |
arm_3L | 1476582..1476993 | 248..659 | 100 | <- | Minus |
BS18070.3prime Sequence
590 bp (561 high quality bases) assembled on 2007-06-06
> BS18070.3prime
ATGGTCTAGAAAGCTTTCACACCTGGAAATCGTTGAAAATGGTTTCCGTG
ACACGGATCTTCTCCACGCGTATATTGAACATCGCAAATCCATTCATGAT
GTTGAAGGCGATGGCGAAGACCACCAGCGCCAAGTACGTTCCCAAGGCGA
TCCACCAGAGCAGCTGCTCGTGGAGCTTCTGCTCAAAGCTCTTGAGCACC
AGCAGCCCGATAGTTAGGCCAGCAATGGCACCAGCCAAATGGGCCACATA
CGAAACAGCACCCGCCGTTTCCGCCTGATCTATGGCCAGGAATTCACTCG
ATGATCCCAGCTGCAGTTCGTCGCCAGCATAGCGAGCATAGATGGCAAAG
CCAAAGTCGAAGGAAACGAAGACCAGAATGTGAAGCAGCTTGATGACTCC
ATAACGCATCTGGTGATAGTTGAGAAGCACATTGGCCAGGTGGGCGGCTA
GCAAAGCGTATACTCCACCACTGGCGCCCACAAGGAACACATCCGGGTCA
AAGATGCTAGTGCCCAGGCTTCCCGCCAGCACCCCGGAGAAGTAGATGCA
GGCTATCCTCGTGGAACCATGAACCATCTCCAGTGGCAGC
BS18070.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33166-PB | 1458 | stet-RB | 885..1458 | 590..17 | 2845 | 99.8 | Minus |
CG33166-PA | 993 | stet-RA | 420..993 | 590..17 | 2845 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:47:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stet-RA | 1898 | CG33166-RA | 590..1165 | 590..15 | 2865 | 99.8 | Minus |
stet-RB | 2380 | CG33166-RB | 1072..1647 | 590..15 | 2865 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1476171..1476523 | 15..367 | 1750 | 99.7 | Plus |
3L | 28110227 | 3L | 1476582..1476805 | 367..590 | 1120 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:47:31 has no hits.
BS18070.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:35 Download gff for
BS18070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33166-PA | 420..993 | 17..590 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:57:54 Download gff for
BS18070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RB | 1072..1647 | 15..590 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:34:21 Download gff for
BS18070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RB | 1072..1647 | 15..590 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:34:21 Download gff for
BS18070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1476582..1476805 | 367..590 | 100 | | Plus |
3L | 1476171..1476522 | 15..366 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:57:54 Download gff for
BS18070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1476171..1476522 | 15..366 | 99 | <- | Plus |
arm_3L | 1476582..1476805 | 367..590 | 100 | | Plus |
BS18070.5prime Sequence
845 bp (743 high quality bases) assembled on 2007-06-06
> BS18070.5prime
GAAGTTATCCCTCGACGTGAGCGGCAAGCGGACACGTAGCTTTAAGTGCG
CCGTACACCATCGAGATCGTGAAGTCTGCTCCGAAAACGATTTCCAGCTG
GTGCTAAACGAACCGCCACTCTTTCGCAAAATGGTGCACGCCGTGGCCAT
GGAGATCCTGCCCGAGGAGCGGGATCGCAAGTACTACGCCGATCGCTACA
CCTGCTGTCCGCCGCCTTTTTTCATCATCCTGGTTACTCTGGTGGAGCTG
GGTTTCTTTGTTTACCACTCAGTGGTCACGGGTGAGGCGGCGCCAAGGGG
ACCCATACCCTCGGACTCCATGTTCATCTACCGTCCCGATAAGCGTCACG
AGATCTGGCGCTTCCTCTTCTACATGGTACTCCATGCCGGGTGGCTGCAT
CTCGGTTTTAACGTGGCAGTTCAGCTGGTTTTTGGGCTGCCACTGGAGAT
GGTTCATGGTTCCACGAGGATAGCCTGCATCTACTTCTCCGGGGTGCTGG
CGGGAAGCCTGGGCACTAGCATCTTTGACCCGGATGTGTTCCTTGTGGGC
GCCAGTGGTGGAGTATACGCTTTGCTAGCCGCCCACCTGGCCAATGTGCT
TCTCAACTATCACCAGATGCGTTATGGAGTCATCAAGCTGCTTCACATTC
TGGTCTTCGTTTCCTTCGACTTTGGCTTTGCCATCTATGCTCGCTATGCT
GGCGACGAACTGCAGCTGGGATCATCGAGTGAATTCCTGGCCATAGATCA
GGCGGAAACGGCGGGTGCTGTTTCGTATGTGGCCCATTTGGCTGGTGCCA
TTGCTGGCCTAACTATCGGGCTGCTGGTGCTCAAGAGCTTTGAGC
BS18070.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33166-PB | 1458 | stet-RB | 467..1294 | 18..845 | 4140 | 100 | Plus |
CG33166-PA | 993 | stet-RA | 2..829 | 18..845 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stet-RA | 1898 | CG33166-RA | 172..999 | 18..845 | 4140 | 100 | Plus |
stet-RB | 2380 | CG33166-RB | 654..1481 | 18..845 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1476582..1476995 | 659..246 | 2070 | 100 | Minus |
3L | 28110227 | 3L | 1477050..1477286 | 254..18 | 1155 | 99.2 | Minus |
3L | 28110227 | 3L | 1476337..1476523 | 845..659 | 935 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:18:41 has no hits.
BS18070.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:40 Download gff for
BS18070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33166-PA | 2..829 | 18..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:49:18 Download gff for
BS18070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RB | 652..1481 | 14..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:11 Download gff for
BS18070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RB | 652..1481 | 14..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:11 Download gff for
BS18070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1476337..1476522 | 660..845 | 100 | <- | Minus |
3L | 1476582..1476993 | 248..659 | 100 | <- | Minus |
3L | 1477057..1477288 | 14..247 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:49:18 Download gff for
BS18070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1476337..1476522 | 660..845 | 100 | <- | Minus |
arm_3L | 1476582..1476993 | 248..659 | 100 | <- | Minus |
arm_3L | 1477057..1477288 | 14..247 | 99 | | Minus |
BS18070.pep Sequence
Translation from 16 to 1008
> BS18070.pep
MSGKRTRSFKCAVHHRDREVCSENDFQLVLNEPPLFRKMVHAVAMEILPE
ERDRKYYADRYTCCPPPFFIILVTLVELGFFVYHSVVTGEAAPRGPIPSD
SMFIYRPDKRHEIWRFLFYMVLHAGWLHLGFNVAVQLVFGLPLEMVHGST
RIACIYFSGVLAGSLGTSIFDPDVFLVGASGGVYALLAAHLANVLLNYHQ
MRYGVIKLLHILVFVSFDFGFAIYARYAGDELQLGSSSEFLAIDQAETAG
AVSYVAHLAGAIAGLTIGLLVLKSFEQKLHEQLLWWIALGTYLALVVFAI
AFNIMNGFAMFNIRVEKIRVTETIFNDFQV*
BS18070.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stet-PA | 330 | CG33166-PA | 1..330 | 1..330 | 1718 | 100 | Plus |
stet-PB | 485 | CG33166-PB | 156..485 | 1..330 | 1718 | 100 | Plus |
rho-PB | 355 | CG1004-PB | 102..354 | 67..330 | 662 | 48.5 | Plus |
rho-PA | 355 | CG1004-PA | 102..354 | 67..330 | 662 | 48.5 | Plus |
ru-PA | 341 | CG1214-PA | 97..315 | 66..306 | 626 | 51.9 | Plus |