Clone BS18070 Report

Search the DGRC for BS18070

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:70
Vector:pDNR-Dual
Associated Gene/Transcriptstet-RA
Protein status:BS18070.pep: full length peptide match
Sequenced Size:1025

Clone Sequence Records

BS18070.complete Sequence

1025 bp assembled on 2010-02-09

GenBank Submission: KX802587

> BS18070.complete
GAAGTTATCAGTCGACATGAGCGGCAAGCGGACACGTAGCTTTAAGTGCG
CCGTACACCATCGAGATCGTGAAGTCTGCTCCGAAAACGATTTCCAGCTG
GTGCTAAACGAACCGCCACTCTTTCGCAAAATGGTGCACGCCGTGGCCAT
GGAGATCCTGCCCGAGGAGCGGGATCGCAAGTACTACGCCGATCGCTACA
CCTGCTGTCCGCCGCCTTTTTTCATCATCCTGGTTACTCTGGTGGAGCTG
GGTTTCTTTGTTTACCACTCAGTGGTCACGGGTGAGGCGGCGCCAAGGGG
ACCCATACCCTCGGACTCCATGTTCATCTACCGTCCCGATAAGCGTCACG
AGATCTGGCGCTTCCTCTTCTACATGGTACTCCATGCCGGGTGGCTGCAT
CTCGGTTTTAACGTGGCAGTTCAGCTGGTTTTTGGGCTGCCACTGGAGAT
GGTTCATGGTTCCACGAGGATAGCCTGCATCTACTTCTCCGGGGTGCTGG
CGGGAAGCCTGGGCACTAGCATCTTTGACCCGGATGTGTTCCTTGTGGGC
GCCAGTGGTGGAGTATACGCTTTGCTAGCCGCCCACCTGGCCAATGTGCT
TCTCAACTATCACCAGATGCGTTATGGAGTCATCAAGCTGCTTCACATTC
TGGTCTTCGTTTCCTTCGACTTTGGCTTTGCCATCTATGCTCGCTATGCT
GGCGACGAACTGCAGCTGGGATCATCGAGTGAATTCCTGGCCATAGATCA
GGCGGAAACGGCGGGTGCTGTTTCGTATGTGGCCCATTTGGCTGGTGCCA
TTGCTGGCCTAACTATCGGGCTGCTGGTGCTCAAGAGCTTTGAGCAGAAG
CTCCACGAGCAGCTGCTCTGGTGGATCGCCTTGGGAACGTACTTGGCGCT
GGTGGTCTTCGCCATCGCCTTCAACATCATGAATGGATTTGCGATGTTCA
ATATACGCGTGGAGAAGATCCGTGTCACGGAAACCATTTTCAATGATTTC
CAGGTGTGAAAGCTTTCTAGACCAT

BS18070.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
stet-RA 993 CG33166-PA 1..993 17..1009 4965 100 Plus
stet-RB 1458 CG33166-PB 466..1458 17..1009 4965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
stet-RA 1898 CG33166-RA 170..1165 16..1011 4980 100 Plus
stet-RB 2380 CG33166-RB 653..1647 17..1011 4975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1476582..1476995 659..246 2070 100 Minus
3L 28110227 3L 1476171..1476523 1011..659 1765 100 Minus
3L 28110227 3L 1477050..1477287 254..17 1160 99.2 Minus
Blast to na_te.dros performed on 2014-11-27 13:12:05 has no hits.

BS18070.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:07 Download gff for BS18070.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RA 161..1152 17..1008 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:41 Download gff for BS18070.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RA 171..1162 17..1008 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:17 Download gff for BS18070.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RA 161..1152 17..1008 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:06 Download gff for BS18070.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RA 171..1162 17..1008 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:06 Download gff for BS18070.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1476174..1476522 660..1008 100 <- Minus
3L 1476582..1476993 248..659 100 <- Minus
3L 1477057..1477287 17..247 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:41 Download gff for BS18070.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1477057..1477287 17..247 100   Minus
arm_3L 1476174..1476522 660..1008 100 <- Minus
arm_3L 1476582..1476993 248..659 100 <- Minus

BS18070.3prime Sequence

590 bp (561 high quality bases) assembled on 2007-06-06

> BS18070.3prime
ATGGTCTAGAAAGCTTTCACACCTGGAAATCGTTGAAAATGGTTTCCGTG
ACACGGATCTTCTCCACGCGTATATTGAACATCGCAAATCCATTCATGAT
GTTGAAGGCGATGGCGAAGACCACCAGCGCCAAGTACGTTCCCAAGGCGA
TCCACCAGAGCAGCTGCTCGTGGAGCTTCTGCTCAAAGCTCTTGAGCACC
AGCAGCCCGATAGTTAGGCCAGCAATGGCACCAGCCAAATGGGCCACATA
CGAAACAGCACCCGCCGTTTCCGCCTGATCTATGGCCAGGAATTCACTCG
ATGATCCCAGCTGCAGTTCGTCGCCAGCATAGCGAGCATAGATGGCAAAG
CCAAAGTCGAAGGAAACGAAGACCAGAATGTGAAGCAGCTTGATGACTCC
ATAACGCATCTGGTGATAGTTGAGAAGCACATTGGCCAGGTGGGCGGCTA
GCAAAGCGTATACTCCACCACTGGCGCCCACAAGGAACACATCCGGGTCA
AAGATGCTAGTGCCCAGGCTTCCCGCCAGCACCCCGGAGAAGTAGATGCA
GGCTATCCTCGTGGAACCATGAACCATCTCCAGTGGCAGC

BS18070.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG33166-PB 1458 stet-RB 885..1458 590..17 2845 99.8 Minus
CG33166-PA 993 stet-RA 420..993 590..17 2845 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
stet-RA 1898 CG33166-RA 590..1165 590..15 2865 99.8 Minus
stet-RB 2380 CG33166-RB 1072..1647 590..15 2865 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1476171..1476523 15..367 1750 99.7 Plus
3L 28110227 3L 1476582..1476805 367..590 1120 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:47:31 has no hits.

BS18070.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:35 Download gff for BS18070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33166-PA 420..993 17..590 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:57:54 Download gff for BS18070.3prime
Subject Subject Range Query Range Percent Splice Strand
stet-RB 1072..1647 15..590 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:34:21 Download gff for BS18070.3prime
Subject Subject Range Query Range Percent Splice Strand
stet-RB 1072..1647 15..590 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:34:21 Download gff for BS18070.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1476582..1476805 367..590 100   Plus
3L 1476171..1476522 15..366 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:57:54 Download gff for BS18070.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1476171..1476522 15..366 99 <- Plus
arm_3L 1476582..1476805 367..590 100   Plus

BS18070.5prime Sequence

845 bp (743 high quality bases) assembled on 2007-06-06

> BS18070.5prime
GAAGTTATCCCTCGACGTGAGCGGCAAGCGGACACGTAGCTTTAAGTGCG
CCGTACACCATCGAGATCGTGAAGTCTGCTCCGAAAACGATTTCCAGCTG
GTGCTAAACGAACCGCCACTCTTTCGCAAAATGGTGCACGCCGTGGCCAT
GGAGATCCTGCCCGAGGAGCGGGATCGCAAGTACTACGCCGATCGCTACA
CCTGCTGTCCGCCGCCTTTTTTCATCATCCTGGTTACTCTGGTGGAGCTG
GGTTTCTTTGTTTACCACTCAGTGGTCACGGGTGAGGCGGCGCCAAGGGG
ACCCATACCCTCGGACTCCATGTTCATCTACCGTCCCGATAAGCGTCACG
AGATCTGGCGCTTCCTCTTCTACATGGTACTCCATGCCGGGTGGCTGCAT
CTCGGTTTTAACGTGGCAGTTCAGCTGGTTTTTGGGCTGCCACTGGAGAT
GGTTCATGGTTCCACGAGGATAGCCTGCATCTACTTCTCCGGGGTGCTGG
CGGGAAGCCTGGGCACTAGCATCTTTGACCCGGATGTGTTCCTTGTGGGC
GCCAGTGGTGGAGTATACGCTTTGCTAGCCGCCCACCTGGCCAATGTGCT
TCTCAACTATCACCAGATGCGTTATGGAGTCATCAAGCTGCTTCACATTC
TGGTCTTCGTTTCCTTCGACTTTGGCTTTGCCATCTATGCTCGCTATGCT
GGCGACGAACTGCAGCTGGGATCATCGAGTGAATTCCTGGCCATAGATCA
GGCGGAAACGGCGGGTGCTGTTTCGTATGTGGCCCATTTGGCTGGTGCCA
TTGCTGGCCTAACTATCGGGCTGCTGGTGCTCAAGAGCTTTGAGC

BS18070.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG33166-PB 1458 stet-RB 467..1294 18..845 4140 100 Plus
CG33166-PA 993 stet-RA 2..829 18..845 4140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
stet-RA 1898 CG33166-RA 172..999 18..845 4140 100 Plus
stet-RB 2380 CG33166-RB 654..1481 18..845 4140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1476582..1476995 659..246 2070 100 Minus
3L 28110227 3L 1477050..1477286 254..18 1155 99.2 Minus
3L 28110227 3L 1476337..1476523 845..659 935 100 Minus
Blast to na_te.dros performed on 2015-02-11 05:18:41 has no hits.

BS18070.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:40 Download gff for BS18070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33166-PA 2..829 18..845 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:49:18 Download gff for BS18070.5prime
Subject Subject Range Query Range Percent Splice Strand
stet-RB 652..1481 14..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:11 Download gff for BS18070.5prime
Subject Subject Range Query Range Percent Splice Strand
stet-RB 652..1481 14..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:11 Download gff for BS18070.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1476337..1476522 660..845 100 <- Minus
3L 1476582..1476993 248..659 100 <- Minus
3L 1477057..1477288 14..247 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:49:18 Download gff for BS18070.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1476337..1476522 660..845 100 <- Minus
arm_3L 1476582..1476993 248..659 100 <- Minus
arm_3L 1477057..1477288 14..247 99   Minus

BS18070.pep Sequence

Translation from 16 to 1008

> BS18070.pep
MSGKRTRSFKCAVHHRDREVCSENDFQLVLNEPPLFRKMVHAVAMEILPE
ERDRKYYADRYTCCPPPFFIILVTLVELGFFVYHSVVTGEAAPRGPIPSD
SMFIYRPDKRHEIWRFLFYMVLHAGWLHLGFNVAVQLVFGLPLEMVHGST
RIACIYFSGVLAGSLGTSIFDPDVFLVGASGGVYALLAAHLANVLLNYHQ
MRYGVIKLLHILVFVSFDFGFAIYARYAGDELQLGSSSEFLAIDQAETAG
AVSYVAHLAGAIAGLTIGLLVLKSFEQKLHEQLLWWIALGTYLALVVFAI
AFNIMNGFAMFNIRVEKIRVTETIFNDFQV*

BS18070.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
stet-PA 330 CG33166-PA 1..330 1..330 1718 100 Plus
stet-PB 485 CG33166-PB 156..485 1..330 1718 100 Plus
rho-PB 355 CG1004-PB 102..354 67..330 662 48.5 Plus
rho-PA 355 CG1004-PA 102..354 67..330 662 48.5 Plus
ru-PA 341 CG1214-PA 97..315 66..306 626 51.9 Plus