Clone Sequence Records
BS18072.complete Sequence
2660 bp assembled on 2009-12-07
GenBank Submission: KX802238
> BS18072.complete
GAAGTTATCAGTCGACATGGGTGACAAGGAAAAACTTATTTTAGACGATC
ATGTCGAAGAAGGAGTCAAATCATACTCCAGGAAACATGGAAGAAAACAC
AGAGTGTACTTTCAACTACCCTGGTACTTTGCTGGAGGCATTGTCCTGTT
CTGGGCACTGCTCTTCATTGCCGTGGTTAAACCACTTTTTTACCGACTTC
CCGAACCGCTGACTGTCGAGGATGCCTCCAAAGGAGGATTCATTGCCGAA
AGGGCACAGGCCAATCTCTATGATTTCGAGGCTATCGGCACTAAAGTGGT
TGGAAGTGATGAAAACGAGCACAAGACCGTACAGTTCCTGCTAAAGGAAT
TAAATCTGATAAAGGATAATATTCAAGAGGATCTATTTGATATGGAAATT
GATTTGCAGTATGCCTACGGTGCGTATGTAAAATGGAATCTGGTCAACAT
GTACCAAGGCATTCAGAACGTGGTGGTTAAGCTCACGCCCAAGGGCACCA
CAAGTGAAAACTACATCCTGGTGAACAGCCACTTCGACTCTCAGCCAACT
AGTCCCTCCACCGGGGACGATGGTCACATGGTGGTCTCCATATTGGAGGT
GCTTCGAGTGATTTCATCGAGGAGAAAATCATTCGAGCATCCCATTATCT
TTTTGATCAACGGATCCGAGGAAAATTCGCTGCAGGCATCTCACGGATTC
ATTGCCTACCACAAATGGGCTAAGAATTGCAAGGCGGTCATTAATCTGGA
TGCAGCTGGCAGTGGTGGTCGCGAACTAATGTTCCAATCTGGCCCAAATA
ATCCATGGTTGGTTAAGATATATAAGGATGGCGCCAAGCATTATTTCTCC
ACCACCATGGCTGAGGAAATCTTCCAAACGGGACTTGTTCCATCTTACAC
TGATTTCGATATTTTCGTTGAATACGGAAACCTTATTGGTCTGGACATTG
GCCAGTGCATCAATGGATTCGTCTATCATACCAAGTATGATCGCATCGAT
GTGATTCCACGGGCAGCTCTGCAGAACACAGGAGACAATCTTCTCGGTTT
GGTTCAAACTCTGTCCAATGCCAGCGAACTTCGCGATCTCAGCGCGAATC
CGACTGGCAACACCATCTTTTTCGATGTCCTGGGATTGTATCTGATCAGC
TATTCCGCCGATGTCGGTGTAAAGCTAAATTATGCCGTGGCTGCCGCAGC
AATAATCCTGATCTATATCTCCTTGCTTCGCATAGCGGAAAAATCAAGTG
TCAGCTCCGAACAGATCCTGAGCACCTTCATCTTAGTTCTTGTGGTCCAG
CTGATCGCCTTTGTCTTGGCATTGGCCCTGCCCCTTTTGGTGGCCTATGG
CCTGGACAAATACGGCTTATCGCTTAGCTACTTCGCCACTCCATCGCTCC
TGATTGGATTGTACATATGTCCCAGTCTTCTGGGCCTTACTCTGCCCAGC
TATATCTATCTGAAGTTGGCGAATACCGAGAAGGTATCCTTTGCCCAACA
AGTTCAACTGGCACTCCATGGACACGCCGCAGTGCTTTCCATCCTCTGCA
TTGCCATCAATTATTATGGATTGCGCACCACCTATGTCATTACATGGACG
CTGGCATTCTACGTAATACCATTGGCCTTCAATCTTCTTACCACACTGCA
TGATCGTGGCTATTCCTGGACAGGTATATTGAAGATTGTCCAGGTTGCTC
CGTTCATGTATAACAGCTACCTCTTCTACTGTTTCATTGTGATACTCACG
CCAATGATGGGTCGTTTTGGAGTGGACACCAATCCTGACTTGATCATTGG
AGCTTTAACTGCCCTGGGAACCATATTGTCCATGGGATTTTTGATTTTAC
TGGTCAATATGTCCCGCCGATCCGGATTCGTTCTCATCGGTCTATTGGCC
GTAACTGCCGCCGGTGTATACATTGCCAGCTCCACCGACATTGGATTCCC
CTACCGCCCCAAAACCAACGTACAGCGTGTGCCCTACCTGCAAGTGCGCC
GCATTTTCTACGAGTATGATGGAACAGTGAGCAAGGATGAGAGTGGATAT
CTGTTCAACTTACAGGATCGTCGCGGACTTACTCCGTTGCTGGAGTCCAA
TGTGGATCTCACTGGTCTGGTCAACATGACATCCGATTGTGCCAAGTACA
TGATGTGCGGCATGCCGCTGTACGATCACCGATGGGTGGAGGCTATGGAA
ACTACCATGTGGCTGCCGCGAAAGAATCCCGTTTGGACACCAGCTGAACC
GATTCTAAAGCAACTTAACAAAACTGTTCTGGCGGATGGCCAGACTGTTC
AATTCGAGTTTGAACTAACGACCTCGGATCACACCAGCATTTTCATTTCT
CCCAACGAGGATGTGATCATCTCCAATTGGTCGTTCCTCAAGGAATACCT
AACAACCAATTCACCTCCGTACCACATCTACTACTCCTTTGGTATCGATA
ATACTCCACTGCGCTTCCACATCGAGCTTAAGAAAGCCGATGGCGTCTAC
ACTGTCCCACTTTTCCAGATGGGAATCGGGGCGCACTACATGCACGTGAA
AGGCGATGATGAGTCCATCAGGCTTGCCAATTCCCTGCCCGACTATGCTG
TCAGTATTCAGTGGCCAGCTATGTATAAGAAGTACATATTTTAAAAGCTT
TCTAGACCAT
BS18072.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10081-RA | 2628 | CG10081-PA | 1..2628 | 17..2644 | 13125 | 100 | Plus |
CG10081-RB | 2622 | CG10081-PB | 1..2622 | 17..2644 | 13000 | 99.7 | Plus |
CG10073-RC | 2646 | CG10073-PC | 449..1000 | 441..992 | 480 | 72.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10081-RA | 2738 | CG10081-RA | 46..2673 | 17..2644 | 13125 | 100 | Plus |
CG10081-RB | 2732 | CG10081-RB | 46..2667 | 17..2644 | 13000 | 99.7 | Plus |
CG10073-RC | 2747 | CG10073-RC | 477..1028 | 441..992 | 480 | 72.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19386090..19386785 | 38..733 | 3480 | 100 | Plus |
2R | 25286936 | 2R | 19388541..19389033 | 1990..2482 | 2465 | 100 | Plus |
2R | 25286936 | 2R | 19387397..19387781 | 1094..1478 | 1925 | 100 | Plus |
2R | 25286936 | 2R | 19387839..19388135 | 1478..1774 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 19389090..19389253 | 2481..2644 | 820 | 100 | Plus |
2R | 25286936 | 2R | 19387179..19387335 | 938..1094 | 770 | 99.4 | Plus |
2R | 25286936 | 2R | 19388325..19388472 | 1843..1990 | 740 | 100 | Plus |
2R | 25286936 | 2R | 19386997..19387121 | 816..940 | 625 | 100 | Plus |
2R | 25286936 | 2R | 19386847..19386931 | 733..817 | 425 | 100 | Plus |
2R | 25286936 | 2R | 19388197..19388266 | 1774..1843 | 350 | 100 | Plus |
2R | 25286936 | 2R | 19383504..19383781 | 1493..1770 | 280 | 73.4 | Plus |
2R | 25286936 | 2R | 19377593..19377688 | 638..733 | 210 | 81.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:50:37 has no hits.
BS18072.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:05 Download gff for
BS18072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10081-RA | 45..2670 | 17..2642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:19 Download gff for
BS18072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10081-RA | 46..2671 | 17..2642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:13 Download gff for
BS18072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10081-RA | 45..2670 | 17..2642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:06 Download gff for
BS18072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10081-RA | 46..2671 | 17..2642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:06 Download gff for
BS18072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19389092..19389251 | 2483..2642 | 100 | | Plus |
2R | 19385968..19385988 | 17..37 | 100 | -> | Plus |
2R | 19386090..19386784 | 38..732 | 100 | -> | Plus |
2R | 19386847..19386931 | 733..817 | 100 | -> | Plus |
2R | 19386999..19387119 | 818..938 | 100 | -> | Plus |
2R | 19387180..19387334 | 939..1093 | 99 | -> | Plus |
2R | 19387397..19387780 | 1094..1477 | 100 | -> | Plus |
2R | 19387839..19388134 | 1478..1773 | 100 | -> | Plus |
2R | 19388197..19388266 | 1774..1843 | 100 | -> | Plus |
2R | 19388326..19388472 | 1844..1990 | 100 | -> | Plus |
2R | 19388542..19389033 | 1991..2482 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:19 Download gff for
BS18072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15276597..15276756 | 2483..2642 | 100 | | Plus |
arm_2R | 15273473..15273493 | 17..37 | 100 | -> | Plus |
arm_2R | 15273595..15274289 | 38..732 | 100 | -> | Plus |
arm_2R | 15274352..15274436 | 733..817 | 100 | -> | Plus |
arm_2R | 15274504..15274624 | 818..938 | 100 | -> | Plus |
arm_2R | 15274685..15274839 | 939..1093 | 99 | -> | Plus |
arm_2R | 15274902..15275285 | 1094..1477 | 100 | -> | Plus |
arm_2R | 15275344..15275639 | 1478..1773 | 100 | -> | Plus |
arm_2R | 15275702..15275771 | 1774..1843 | 100 | -> | Plus |
arm_2R | 15275831..15275977 | 1844..1990 | 100 | -> | Plus |
arm_2R | 15276047..15276538 | 1991..2482 | 100 | -> | Plus |
BS18072.3prime Sequence
594 bp (514 high quality bases) assembled on 2007-06-06
> BS18072.3prime
ATGGTCTAGAAAGCTTTTAAAATATGTACTTCTTATACATAGCTGGCCAC
TGAATACTGACAGCATAGTCGGGCAGGGAATTGGCAAGCCTGATGGACTC
ATCATCGCCTTTCACGTGCATGTAGTGCGCCCCGATTCCCATCTGGAAAA
GTGGGACAGTGTAGACGCCATCGGCTTTCTTAAGCTCGATGTGGAAGCGC
AGTGGAGTATTATCGATACCAAAGGAGTAGTAGATGTGGTACGGAGGTGA
ATTGGTTGTTAGGTATTCCTTGAGGAACGACCAATTGGAGATGATCACAT
CCTCGTTGGGAGAAATGAAAATGCTGGTGTGATCCGAGGTCGTTAGTTCA
AACTCGAATTGAACAGTCTGGCCATCCGCCAGAACAGTTTTGTTAAGTTG
CTTTAGAATCGGTTCAGCTGGTGTCCAAACGGGATTCTTTCGCGGCAGCC
ACATGGTAGTTTCCATAGCCTCCACCCATCGGTGATCGTACAGCGGCATG
CCGCACATCATGTACTTGGCACAATCGGATGTCATGTTGACCAGACCAGT
GAGATCCACATTGGACTCCAGCAACGGAGTAAGTCCGCGACAAT
BS18072.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10081-PA | 2628 | CG10081-RA | 2054..2628 | 591..17 | 2875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:54:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10081-RB | 2732 | CG10081-RB | 2093..2667 | 591..17 | 2875 | 100 | Minus |
CG10081-RA | 2738 | CG10081-RA | 2099..2673 | 591..17 | 2875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:54:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19388621..19389033 | 591..179 | 2065 | 100 | Minus |
2R | 25286936 | 2R | 19389090..19389253 | 180..17 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:54:15 has no hits.
BS18072.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:46 Download gff for
BS18072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10081-PA | 2051..2628 | 17..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:03:07 Download gff for
BS18072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10081-RA | 2096..2675 | 11..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:26 Download gff for
BS18072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10081-RA | 2096..2675 | 11..594 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:26 Download gff for
BS18072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19388618..19389033 | 179..594 | 99 | -> | Minus |
2R | 19389092..19389255 | 11..178 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:03:07 Download gff for
BS18072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15276123..15276538 | 179..594 | 99 | -> | Minus |
arm_2R | 15276597..15276760 | 11..178 | 97 | | Minus |
BS18072.5prime Sequence
830 bp (805 high quality bases) assembled on 2007-06-06
> BS18072.5prime
GAAGTTATCAGTCGACATGGGTGACAAGGAAAAACTTATTTTAGACGATC
ATGTCGAAGAAGGAGTCAAATCATACTCCAGGAAACATGGAAGAAAACAC
AGAGTGTACTTTCAACTACCCTGGTACTTTGCTGGAGGCATTGTCCTGTT
CTGGGCACTGCTCTTCATTGCCGTGGTTAAACCACTTTTTTACCGACTTC
CCGAACCGCTGACTGTCGAGGATGCCTCCAAAGGAGGATTCATTGCCGAA
AGGGCACAGGCCAATCTCTATGATTTCGAGGCTATCGGCACTAAAGTGGT
TGGAAGTGATGAAAACGAGCACAAGACCGTACAGTTCCTGCTAAAGGAAT
TAAATCTGATAAAGGATAATATTCAAGAGGATCTATTTGATATGGAAATT
GATTTGCAGTATGCCTACGGTGCGTATGTAAAATGGAATCTGGTCAACAT
GTACCAAGGCATTCAGAACGTGGTGGTTAAGCTCACGCCCAAGGGCACCA
CAAGTGAAAACTACATCCTGGTGAACAGCCACTTCGACTCTCAGCCAACT
AGTCCCTCCACCGGGGACGATGGTCACATGGTGGTCTCCATATTGGAGGT
GCTTCGAGTGATTTCATCGAGGAGAAAATCATTCGAGCATCCCATTATCT
TTTTGATCAACGGATCCGAGGAAAATTCGCTGCAGGCATCTCACGGATTC
ATTGCCTACCACAAATGGGCTAAGAATTGCAAGGCGGTCATTAATCTGGA
TGCAGCTGGCAGTGGTGGTCGCGAACTAATGTTCCAATCTGGCCCAAATA
ATCCATGGTTGGTTAAGATATATAAGGATG
BS18072.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10081-PA | 2628 | CG10081-RA | 1..814 | 17..830 | 4070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10081-RB | 2732 | CG10081-RB | 46..859 | 17..830 | 4070 | 100 | Plus |
CG10081-RA | 2738 | CG10081-RA | 46..859 | 17..830 | 4070 | 100 | Plus |
CG10073-RC | 2747 | CG10073-RC | 477..836 | 441..800 | 360 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19386090..19386785 | 38..733 | 3480 | 100 | Plus |
2R | 25286936 | 2R | 19386847..19386931 | 733..817 | 425 | 100 | Plus |
2R | 25286936 | 2R | 19377593..19377688 | 638..733 | 210 | 81.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:38:40 has no hits.
BS18072.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:51 Download gff for
BS18072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10081-PA | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:53:38 Download gff for
BS18072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10081-RA | 37..859 | 7..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:37 Download gff for
BS18072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10081-RA | 37..859 | 7..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:37 Download gff for
BS18072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19386090..19386784 | 38..732 | 100 | -> | Plus |
2R | 19386847..19386931 | 733..817 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:53:38 Download gff for
BS18072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15273595..15274289 | 38..732 | 100 | -> | Plus |
arm_2R | 15274352..15274436 | 733..817 | 100 | -> | Plus |
BS18072.pep Sequence
Translation from 16 to 2643
> BS18072.pep
MGDKEKLILDDHVEEGVKSYSRKHGRKHRVYFQLPWYFAGGIVLFWALLF
IAVVKPLFYRLPEPLTVEDASKGGFIAERAQANLYDFEAIGTKVVGSDEN
EHKTVQFLLKELNLIKDNIQEDLFDMEIDLQYAYGAYVKWNLVNMYQGIQ
NVVVKLTPKGTTSENYILVNSHFDSQPTSPSTGDDGHMVVSILEVLRVIS
SRRKSFEHPIIFLINGSEENSLQASHGFIAYHKWAKNCKAVINLDAAGSG
GRELMFQSGPNNPWLVKIYKDGAKHYFSTTMAEEIFQTGLVPSYTDFDIF
VEYGNLIGLDIGQCINGFVYHTKYDRIDVIPRAALQNTGDNLLGLVQTLS
NASELRDLSANPTGNTIFFDVLGLYLISYSADVGVKLNYAVAAAAIILIY
ISLLRIAEKSSVSSEQILSTFILVLVVQLIAFVLALALPLLVAYGLDKYG
LSLSYFATPSLLIGLYICPSLLGLTLPSYIYLKLANTEKVSFAQQVQLAL
HGHAAVLSILCIAINYYGLRTTYVITWTLAFYVIPLAFNLLTTLHDRGYS
WTGILKIVQVAPFMYNSYLFYCFIVILTPMMGRFGVDTNPDLIIGALTAL
GTILSMGFLILLVNMSRRSGFVLIGLLAVTAAGVYIASSTDIGFPYRPKT
NVQRVPYLQVRRIFYEYDGTVSKDESGYLFNLQDRRGLTPLLESNVDLTG
LVNMTSDCAKYMMCGMPLYDHRWVEAMETTMWLPRKNPVWTPAEPILKQL
NKTVLADGQTVQFEFELTTSDHTSIFISPNEDVIISNWSFLKEYLTTNSP
PYHIYYSFGIDNTPLRFHIELKKADGVYTVPLFQMGIGAHYMHVKGDDES
IRLANSLPDYAVSIQWPAMYKKYIF*
BS18072.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10081-PA | 875 | CG10081-PA | 1..875 | 1..875 | 4542 | 100 | Plus |
CG10081-PB | 873 | CG10081-PB | 1..873 | 1..875 | 4519 | 99.8 | Plus |
CG10073-PA | 873 | CG10073-PA | 1..873 | 1..875 | 2877 | 61.7 | Plus |
CG10073-PC | 881 | CG10073-PC | 16..881 | 8..875 | 2844 | 61.5 | Plus |
CG30047-PA | 879 | CG30047-PA | 19..879 | 17..875 | 2151 | 46.3 | Plus |