Clone BS18072 Report

Search the DGRC for BS18072

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG10081-RA
Protein status:BS18072.pep: full length peptide match
Sequenced Size:2660

Clone Sequence Records

BS18072.complete Sequence

2660 bp assembled on 2009-12-07

GenBank Submission: KX802238

> BS18072.complete
GAAGTTATCAGTCGACATGGGTGACAAGGAAAAACTTATTTTAGACGATC
ATGTCGAAGAAGGAGTCAAATCATACTCCAGGAAACATGGAAGAAAACAC
AGAGTGTACTTTCAACTACCCTGGTACTTTGCTGGAGGCATTGTCCTGTT
CTGGGCACTGCTCTTCATTGCCGTGGTTAAACCACTTTTTTACCGACTTC
CCGAACCGCTGACTGTCGAGGATGCCTCCAAAGGAGGATTCATTGCCGAA
AGGGCACAGGCCAATCTCTATGATTTCGAGGCTATCGGCACTAAAGTGGT
TGGAAGTGATGAAAACGAGCACAAGACCGTACAGTTCCTGCTAAAGGAAT
TAAATCTGATAAAGGATAATATTCAAGAGGATCTATTTGATATGGAAATT
GATTTGCAGTATGCCTACGGTGCGTATGTAAAATGGAATCTGGTCAACAT
GTACCAAGGCATTCAGAACGTGGTGGTTAAGCTCACGCCCAAGGGCACCA
CAAGTGAAAACTACATCCTGGTGAACAGCCACTTCGACTCTCAGCCAACT
AGTCCCTCCACCGGGGACGATGGTCACATGGTGGTCTCCATATTGGAGGT
GCTTCGAGTGATTTCATCGAGGAGAAAATCATTCGAGCATCCCATTATCT
TTTTGATCAACGGATCCGAGGAAAATTCGCTGCAGGCATCTCACGGATTC
ATTGCCTACCACAAATGGGCTAAGAATTGCAAGGCGGTCATTAATCTGGA
TGCAGCTGGCAGTGGTGGTCGCGAACTAATGTTCCAATCTGGCCCAAATA
ATCCATGGTTGGTTAAGATATATAAGGATGGCGCCAAGCATTATTTCTCC
ACCACCATGGCTGAGGAAATCTTCCAAACGGGACTTGTTCCATCTTACAC
TGATTTCGATATTTTCGTTGAATACGGAAACCTTATTGGTCTGGACATTG
GCCAGTGCATCAATGGATTCGTCTATCATACCAAGTATGATCGCATCGAT
GTGATTCCACGGGCAGCTCTGCAGAACACAGGAGACAATCTTCTCGGTTT
GGTTCAAACTCTGTCCAATGCCAGCGAACTTCGCGATCTCAGCGCGAATC
CGACTGGCAACACCATCTTTTTCGATGTCCTGGGATTGTATCTGATCAGC
TATTCCGCCGATGTCGGTGTAAAGCTAAATTATGCCGTGGCTGCCGCAGC
AATAATCCTGATCTATATCTCCTTGCTTCGCATAGCGGAAAAATCAAGTG
TCAGCTCCGAACAGATCCTGAGCACCTTCATCTTAGTTCTTGTGGTCCAG
CTGATCGCCTTTGTCTTGGCATTGGCCCTGCCCCTTTTGGTGGCCTATGG
CCTGGACAAATACGGCTTATCGCTTAGCTACTTCGCCACTCCATCGCTCC
TGATTGGATTGTACATATGTCCCAGTCTTCTGGGCCTTACTCTGCCCAGC
TATATCTATCTGAAGTTGGCGAATACCGAGAAGGTATCCTTTGCCCAACA
AGTTCAACTGGCACTCCATGGACACGCCGCAGTGCTTTCCATCCTCTGCA
TTGCCATCAATTATTATGGATTGCGCACCACCTATGTCATTACATGGACG
CTGGCATTCTACGTAATACCATTGGCCTTCAATCTTCTTACCACACTGCA
TGATCGTGGCTATTCCTGGACAGGTATATTGAAGATTGTCCAGGTTGCTC
CGTTCATGTATAACAGCTACCTCTTCTACTGTTTCATTGTGATACTCACG
CCAATGATGGGTCGTTTTGGAGTGGACACCAATCCTGACTTGATCATTGG
AGCTTTAACTGCCCTGGGAACCATATTGTCCATGGGATTTTTGATTTTAC
TGGTCAATATGTCCCGCCGATCCGGATTCGTTCTCATCGGTCTATTGGCC
GTAACTGCCGCCGGTGTATACATTGCCAGCTCCACCGACATTGGATTCCC
CTACCGCCCCAAAACCAACGTACAGCGTGTGCCCTACCTGCAAGTGCGCC
GCATTTTCTACGAGTATGATGGAACAGTGAGCAAGGATGAGAGTGGATAT
CTGTTCAACTTACAGGATCGTCGCGGACTTACTCCGTTGCTGGAGTCCAA
TGTGGATCTCACTGGTCTGGTCAACATGACATCCGATTGTGCCAAGTACA
TGATGTGCGGCATGCCGCTGTACGATCACCGATGGGTGGAGGCTATGGAA
ACTACCATGTGGCTGCCGCGAAAGAATCCCGTTTGGACACCAGCTGAACC
GATTCTAAAGCAACTTAACAAAACTGTTCTGGCGGATGGCCAGACTGTTC
AATTCGAGTTTGAACTAACGACCTCGGATCACACCAGCATTTTCATTTCT
CCCAACGAGGATGTGATCATCTCCAATTGGTCGTTCCTCAAGGAATACCT
AACAACCAATTCACCTCCGTACCACATCTACTACTCCTTTGGTATCGATA
ATACTCCACTGCGCTTCCACATCGAGCTTAAGAAAGCCGATGGCGTCTAC
ACTGTCCCACTTTTCCAGATGGGAATCGGGGCGCACTACATGCACGTGAA
AGGCGATGATGAGTCCATCAGGCTTGCCAATTCCCTGCCCGACTATGCTG
TCAGTATTCAGTGGCCAGCTATGTATAAGAAGTACATATTTTAAAAGCTT
TCTAGACCAT

BS18072.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10081-RA 2628 CG10081-PA 1..2628 17..2644 13125 100 Plus
CG10081-RB 2622 CG10081-PB 1..2622 17..2644 13000 99.7 Plus
CG10073-RC 2646 CG10073-PC 449..1000 441..992 480 72.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10081-RA 2738 CG10081-RA 46..2673 17..2644 13125 100 Plus
CG10081-RB 2732 CG10081-RB 46..2667 17..2644 13000 99.7 Plus
CG10073-RC 2747 CG10073-RC 477..1028 441..992 480 72.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19386090..19386785 38..733 3480 100 Plus
2R 25286936 2R 19388541..19389033 1990..2482 2465 100 Plus
2R 25286936 2R 19387397..19387781 1094..1478 1925 100 Plus
2R 25286936 2R 19387839..19388135 1478..1774 1485 100 Plus
2R 25286936 2R 19389090..19389253 2481..2644 820 100 Plus
2R 25286936 2R 19387179..19387335 938..1094 770 99.4 Plus
2R 25286936 2R 19388325..19388472 1843..1990 740 100 Plus
2R 25286936 2R 19386997..19387121 816..940 625 100 Plus
2R 25286936 2R 19386847..19386931 733..817 425 100 Plus
2R 25286936 2R 19388197..19388266 1774..1843 350 100 Plus
2R 25286936 2R 19383504..19383781 1493..1770 280 73.4 Plus
2R 25286936 2R 19377593..19377688 638..733 210 81.2 Plus
Blast to na_te.dros performed on 2014-11-28 01:50:37 has no hits.

BS18072.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:05 Download gff for BS18072.complete
Subject Subject Range Query Range Percent Splice Strand
CG10081-RA 45..2670 17..2642 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:19 Download gff for BS18072.complete
Subject Subject Range Query Range Percent Splice Strand
CG10081-RA 46..2671 17..2642 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:13 Download gff for BS18072.complete
Subject Subject Range Query Range Percent Splice Strand
CG10081-RA 45..2670 17..2642 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:06 Download gff for BS18072.complete
Subject Subject Range Query Range Percent Splice Strand
CG10081-RA 46..2671 17..2642 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:06 Download gff for BS18072.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19389092..19389251 2483..2642 100   Plus
2R 19385968..19385988 17..37 100 -> Plus
2R 19386090..19386784 38..732 100 -> Plus
2R 19386847..19386931 733..817 100 -> Plus
2R 19386999..19387119 818..938 100 -> Plus
2R 19387180..19387334 939..1093 99 -> Plus
2R 19387397..19387780 1094..1477 100 -> Plus
2R 19387839..19388134 1478..1773 100 -> Plus
2R 19388197..19388266 1774..1843 100 -> Plus
2R 19388326..19388472 1844..1990 100 -> Plus
2R 19388542..19389033 1991..2482 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:19 Download gff for BS18072.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15276597..15276756 2483..2642 100   Plus
arm_2R 15273473..15273493 17..37 100 -> Plus
arm_2R 15273595..15274289 38..732 100 -> Plus
arm_2R 15274352..15274436 733..817 100 -> Plus
arm_2R 15274504..15274624 818..938 100 -> Plus
arm_2R 15274685..15274839 939..1093 99 -> Plus
arm_2R 15274902..15275285 1094..1477 100 -> Plus
arm_2R 15275344..15275639 1478..1773 100 -> Plus
arm_2R 15275702..15275771 1774..1843 100 -> Plus
arm_2R 15275831..15275977 1844..1990 100 -> Plus
arm_2R 15276047..15276538 1991..2482 100 -> Plus

BS18072.3prime Sequence

594 bp (514 high quality bases) assembled on 2007-06-06

> BS18072.3prime
ATGGTCTAGAAAGCTTTTAAAATATGTACTTCTTATACATAGCTGGCCAC
TGAATACTGACAGCATAGTCGGGCAGGGAATTGGCAAGCCTGATGGACTC
ATCATCGCCTTTCACGTGCATGTAGTGCGCCCCGATTCCCATCTGGAAAA
GTGGGACAGTGTAGACGCCATCGGCTTTCTTAAGCTCGATGTGGAAGCGC
AGTGGAGTATTATCGATACCAAAGGAGTAGTAGATGTGGTACGGAGGTGA
ATTGGTTGTTAGGTATTCCTTGAGGAACGACCAATTGGAGATGATCACAT
CCTCGTTGGGAGAAATGAAAATGCTGGTGTGATCCGAGGTCGTTAGTTCA
AACTCGAATTGAACAGTCTGGCCATCCGCCAGAACAGTTTTGTTAAGTTG
CTTTAGAATCGGTTCAGCTGGTGTCCAAACGGGATTCTTTCGCGGCAGCC
ACATGGTAGTTTCCATAGCCTCCACCCATCGGTGATCGTACAGCGGCATG
CCGCACATCATGTACTTGGCACAATCGGATGTCATGTTGACCAGACCAGT
GAGATCCACATTGGACTCCAGCAACGGAGTAAGTCCGCGACAAT

BS18072.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10081-PA 2628 CG10081-RA 2054..2628 591..17 2875 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10081-RB 2732 CG10081-RB 2093..2667 591..17 2875 100 Minus
CG10081-RA 2738 CG10081-RA 2099..2673 591..17 2875 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19388621..19389033 591..179 2065 100 Minus
2R 25286936 2R 19389090..19389253 180..17 820 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:54:15 has no hits.

BS18072.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:46 Download gff for BS18072.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10081-PA 2051..2628 17..594 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:03:07 Download gff for BS18072.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10081-RA 2096..2675 11..594 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:26 Download gff for BS18072.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10081-RA 2096..2675 11..594 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:26 Download gff for BS18072.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19388618..19389033 179..594 99 -> Minus
2R 19389092..19389255 11..178 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:03:07 Download gff for BS18072.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15276123..15276538 179..594 99 -> Minus
arm_2R 15276597..15276760 11..178 97   Minus

BS18072.5prime Sequence

830 bp (805 high quality bases) assembled on 2007-06-06

> BS18072.5prime
GAAGTTATCAGTCGACATGGGTGACAAGGAAAAACTTATTTTAGACGATC
ATGTCGAAGAAGGAGTCAAATCATACTCCAGGAAACATGGAAGAAAACAC
AGAGTGTACTTTCAACTACCCTGGTACTTTGCTGGAGGCATTGTCCTGTT
CTGGGCACTGCTCTTCATTGCCGTGGTTAAACCACTTTTTTACCGACTTC
CCGAACCGCTGACTGTCGAGGATGCCTCCAAAGGAGGATTCATTGCCGAA
AGGGCACAGGCCAATCTCTATGATTTCGAGGCTATCGGCACTAAAGTGGT
TGGAAGTGATGAAAACGAGCACAAGACCGTACAGTTCCTGCTAAAGGAAT
TAAATCTGATAAAGGATAATATTCAAGAGGATCTATTTGATATGGAAATT
GATTTGCAGTATGCCTACGGTGCGTATGTAAAATGGAATCTGGTCAACAT
GTACCAAGGCATTCAGAACGTGGTGGTTAAGCTCACGCCCAAGGGCACCA
CAAGTGAAAACTACATCCTGGTGAACAGCCACTTCGACTCTCAGCCAACT
AGTCCCTCCACCGGGGACGATGGTCACATGGTGGTCTCCATATTGGAGGT
GCTTCGAGTGATTTCATCGAGGAGAAAATCATTCGAGCATCCCATTATCT
TTTTGATCAACGGATCCGAGGAAAATTCGCTGCAGGCATCTCACGGATTC
ATTGCCTACCACAAATGGGCTAAGAATTGCAAGGCGGTCATTAATCTGGA
TGCAGCTGGCAGTGGTGGTCGCGAACTAATGTTCCAATCTGGCCCAAATA
ATCCATGGTTGGTTAAGATATATAAGGATG

BS18072.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10081-PA 2628 CG10081-RA 1..814 17..830 4070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10081-RB 2732 CG10081-RB 46..859 17..830 4070 100 Plus
CG10081-RA 2738 CG10081-RA 46..859 17..830 4070 100 Plus
CG10073-RC 2747 CG10073-RC 477..836 441..800 360 74 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19386090..19386785 38..733 3480 100 Plus
2R 25286936 2R 19386847..19386931 733..817 425 100 Plus
2R 25286936 2R 19377593..19377688 638..733 210 81.2 Plus
Blast to na_te.dros performed on 2015-02-12 10:38:40 has no hits.

BS18072.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:51 Download gff for BS18072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10081-PA 1..814 17..830 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:53:38 Download gff for BS18072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10081-RA 37..859 7..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:37 Download gff for BS18072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10081-RA 37..859 7..830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:37 Download gff for BS18072.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19386090..19386784 38..732 100 -> Plus
2R 19386847..19386931 733..817 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:53:38 Download gff for BS18072.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15273595..15274289 38..732 100 -> Plus
arm_2R 15274352..15274436 733..817 100 -> Plus

BS18072.pep Sequence

Translation from 16 to 2643

> BS18072.pep
MGDKEKLILDDHVEEGVKSYSRKHGRKHRVYFQLPWYFAGGIVLFWALLF
IAVVKPLFYRLPEPLTVEDASKGGFIAERAQANLYDFEAIGTKVVGSDEN
EHKTVQFLLKELNLIKDNIQEDLFDMEIDLQYAYGAYVKWNLVNMYQGIQ
NVVVKLTPKGTTSENYILVNSHFDSQPTSPSTGDDGHMVVSILEVLRVIS
SRRKSFEHPIIFLINGSEENSLQASHGFIAYHKWAKNCKAVINLDAAGSG
GRELMFQSGPNNPWLVKIYKDGAKHYFSTTMAEEIFQTGLVPSYTDFDIF
VEYGNLIGLDIGQCINGFVYHTKYDRIDVIPRAALQNTGDNLLGLVQTLS
NASELRDLSANPTGNTIFFDVLGLYLISYSADVGVKLNYAVAAAAIILIY
ISLLRIAEKSSVSSEQILSTFILVLVVQLIAFVLALALPLLVAYGLDKYG
LSLSYFATPSLLIGLYICPSLLGLTLPSYIYLKLANTEKVSFAQQVQLAL
HGHAAVLSILCIAINYYGLRTTYVITWTLAFYVIPLAFNLLTTLHDRGYS
WTGILKIVQVAPFMYNSYLFYCFIVILTPMMGRFGVDTNPDLIIGALTAL
GTILSMGFLILLVNMSRRSGFVLIGLLAVTAAGVYIASSTDIGFPYRPKT
NVQRVPYLQVRRIFYEYDGTVSKDESGYLFNLQDRRGLTPLLESNVDLTG
LVNMTSDCAKYMMCGMPLYDHRWVEAMETTMWLPRKNPVWTPAEPILKQL
NKTVLADGQTVQFEFELTTSDHTSIFISPNEDVIISNWSFLKEYLTTNSP
PYHIYYSFGIDNTPLRFHIELKKADGVYTVPLFQMGIGAHYMHVKGDDES
IRLANSLPDYAVSIQWPAMYKKYIF*

BS18072.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10081-PA 875 CG10081-PA 1..875 1..875 4542 100 Plus
CG10081-PB 873 CG10081-PB 1..873 1..875 4519 99.8 Plus
CG10073-PA 873 CG10073-PA 1..873 1..875 2877 61.7 Plus
CG10073-PC 881 CG10073-PC 16..881 8..875 2844 61.5 Plus
CG30047-PA 879 CG30047-PA 19..879 17..875 2151 46.3 Plus