Clone BS18076 Report

Search the DGRC for BS18076

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG13041-RA
Protein status:BS18076.pep: full length peptide match
Sequenced Size:407

Clone Sequence Records

BS18076.complete Sequence

407 bp assembled on 2010-02-09

GenBank Submission: KX806454

> BS18076.complete
GAAGTTATCAGTCGACATGTTCAAATTTGTTGCTGTCATCGCTCTCCTGG
TCGCCACCGCCAGTGCTGGTCTCATCGAGACTCACCATGTGGTGCACGAG
CCCGTTCTGGCCAAGGTTGGATCGGTGGTGCACTCTGCTCCCTCGGCGGT
TTCCCACCAGAGCATCACCCAGGTGCACAGCAAGGCGGTGGTGCAGCCAG
TGGTTGCTCCCATCGTGAAGACCACCACCTACTCCCATCCCGCCGTTGCC
GTCCACGCTGCTCCAGTGGTTCACTCCGTGCCCGTTGTCCACGCCGCTCC
AGTCGTCCACTCTGTGCCTCTGGTCCACTCAGCTCCCCTCGTCAAGTCGG
TGGTGCACTCCGCTCCCCTGGCCTACACCCTGCACCACTAAAAGCTTTCT
AGACCAT

BS18076.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13041-RA 375 CG13041-PA 1..375 17..391 1875 100 Plus
CG13060-RA 396 CG13060-PA 1..396 17..391 1385 91.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13041-RA 513 CG13041-RA 68..442 17..391 1875 100 Plus
CG13060-RA 539 CG13060-RA 71..467 17..392 1390 91.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16319025..16319387 391..29 1815 100 Minus
3L 28110227 3L 16320004..16320382 35..392 1360 91.8 Plus
Blast to na_te.dros performed on 2014-11-28 03:06:17 has no hits.

BS18076.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:21 Download gff for BS18076.complete
Subject Subject Range Query Range Percent Splice Strand
CG13041-RA 1..375 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:05 Download gff for BS18076.complete
Subject Subject Range Query Range Percent Splice Strand
CG13041-RA 67..434 22..389 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:19 Download gff for BS18076.complete
Subject Subject Range Query Range Percent Splice Strand
CG13041-RA 73..440 22..389 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:21 Download gff for BS18076.complete
Subject Subject Range Query Range Percent Splice Strand
CG13041-RA 57..436 12..391 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:55 Download gff for BS18076.complete
Subject Subject Range Query Range Percent Splice Strand
CG13041-RA 73..440 22..389 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:55 Download gff for BS18076.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16319027..16319391 22..389 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:19 Download gff for BS18076.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16312127..16312491 22..389 98   Minus

BS18076.3prime Sequence

405 bp (405 high quality bases) assembled on 2007-06-06

> BS18076.3prime
ATGGTCTAGAAAGCTTTTAGTGGTGCAGGGTGTAGGCCAGGGGAGCGGAG
TGCACCACCGACTTGACGAGGGGAGCTGAGTGGACCAGAGGCACAGAGTG
GACGACTGGAGCGGCGTGGACAACGGGCACGGAGTGAACCACTGGAGCAG
CGTGGACGGCAACGGCGGGATGGGAGTAGGTGGTGGTCTTCACGATGGGA
GCAACCACTGGCTGCACCACCGCCTTGCTGTGCACCTGGGTGATGCTCTG
GTGGGAAACCGCCGAGGGAGCAGAGTGCACCACCGATCCAACCTTGGCCA
GAACGGGCTCGTGCACCACATGGTGAGTCTCGATGAGACCAGCACTGGCG
GTGGCGACCAGGAGAGCGATGACAGCAACAAATTTGAACATGTCGACTGA
TAACT

BS18076.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13041-PA 375 CG13041-RA 1..375 391..17 1875 100 Minus
CG13060-PA 396 CG13060-RA 19..296 373..96 1315 98.9 Minus
CG13060-PA 396 CG13060-RA 331..396 82..17 255 95.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 14:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13041-RA 513 CG13041-RA 68..442 391..17 1875 100 Minus
CG13060-RA 539 CG13060-RA 71..467 391..16 1450 91.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 14:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16319025..16319387 17..379 1815 100 Plus
3L 28110227 3L 16320004..16320382 373..16 1360 91.8 Minus
Blast to na_te.dros performed on 2015-02-05 14:13:18 has no hits.

BS18076.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:56 Download gff for BS18076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13041-PA 1..375 17..391 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:03 Download gff for BS18076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13041-RA 63..442 17..396 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:18:01 Download gff for BS18076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13041-RA 63..442 17..396 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:18:01 Download gff for BS18076.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16319025..16319387 17..379 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:03 Download gff for BS18076.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16312125..16312487 17..379 100 <- Plus

BS18076.5prime Sequence

405 bp (405 high quality bases) assembled on 2007-06-06

> BS18076.5prime
GAAGTTATCAGTCGACATGTTCAAATTTGTTGCTGTCATCGCTCTCCTGG
TCGCCACCGCCAGTGCTGGTCTCATCGAGACTCACCATGTGGTGCACGAG
CCCGTTCTGGCCAAGGTTGGATCGGTGGTGCACTCTGCTCCCTCGGCGGT
TTCCCACCAGAGCATCACCCAGGTGCACAGCAAGGCGGTGGTGCAGCCAG
TGGTTGCTCCCATCGTGAAGACCACCACCTACTCCCATCCCGCCGTTGCC
GTCCACGCTGCTCCAGTGGTTCACTCCGTGCCCGTTGTCCACGCCGCTCC
AGTCGTCCACTCTGTGCCTCTGGTCCACTCAGCTCCCCTCGTCAAGTCGG
TGGTGCACTCCGCTCCCCTGGCCTACACCCTGCACCACTAAAAGCTTTCT
AGACC

BS18076.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13041-PA 375 CG13041-RA 1..375 17..391 1875 100 Plus
CG13060-PA 396 CG13060-RA 19..296 35..312 1315 98.9 Plus
CG13060-PA 396 CG13060-RA 331..396 326..391 255 95.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13041-RA 513 CG13041-RA 68..442 17..391 1875 100 Plus
CG13060-RA 539 CG13060-RA 71..467 17..392 1450 91.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16319025..16319387 391..29 1815 100 Minus
3L 28110227 3L 16320004..16320382 35..392 1360 91.8 Plus
Blast to na_te.dros performed on 2015-02-12 23:51:33 has no hits.

BS18076.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:01 Download gff for BS18076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13041-PA 1..375 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:22:22 Download gff for BS18076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13041-RA 63..442 12..391 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:24:46 Download gff for BS18076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13041-RA 63..442 12..391 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:24:46 Download gff for BS18076.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16319025..16319387 29..391 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:22:22 Download gff for BS18076.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16312125..16312487 29..391 100 <- Minus

BS18076.pep Sequence

Translation from 16 to 390

> BS18076.pep
MFKFVAVIALLVATASAGLIETHHVVHEPVLAKVGSVVHSAPSAVSHQSI
TQVHSKAVVQPVVAPIVKTTTYSHPAVAVHAAPVVHSVPVVHAAPVVHSV
PLVHSAPLVKSVVHSAPLAYTLHH*

BS18076.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13041-PA 124 CG13041-PA 1..124 1..124 621 100 Plus
CG13060-PA 131 CG13060-PA 1..131 1..124 584 90.8 Plus
CG13044-PA 155 CG13044-PA 1..131 1..121 264 50 Plus
CG13040-PB 185 CG13040-PB 1..144 1..124 236 45.5 Plus
CG13040-PA 185 CG13040-PA 1..144 1..124 236 45.5 Plus