Clone Sequence Records
BS18076.complete Sequence
407 bp assembled on 2010-02-09
GenBank Submission: KX806454
> BS18076.complete
GAAGTTATCAGTCGACATGTTCAAATTTGTTGCTGTCATCGCTCTCCTGG
TCGCCACCGCCAGTGCTGGTCTCATCGAGACTCACCATGTGGTGCACGAG
CCCGTTCTGGCCAAGGTTGGATCGGTGGTGCACTCTGCTCCCTCGGCGGT
TTCCCACCAGAGCATCACCCAGGTGCACAGCAAGGCGGTGGTGCAGCCAG
TGGTTGCTCCCATCGTGAAGACCACCACCTACTCCCATCCCGCCGTTGCC
GTCCACGCTGCTCCAGTGGTTCACTCCGTGCCCGTTGTCCACGCCGCTCC
AGTCGTCCACTCTGTGCCTCTGGTCCACTCAGCTCCCCTCGTCAAGTCGG
TGGTGCACTCCGCTCCCCTGGCCTACACCCTGCACCACTAAAAGCTTTCT
AGACCAT
BS18076.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13041-RA | 375 | CG13041-PA | 1..375 | 17..391 | 1875 | 100 | Plus |
CG13060-RA | 396 | CG13060-PA | 1..396 | 17..391 | 1385 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13041-RA | 513 | CG13041-RA | 68..442 | 17..391 | 1875 | 100 | Plus |
CG13060-RA | 539 | CG13060-RA | 71..467 | 17..392 | 1390 | 91.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16319025..16319387 | 391..29 | 1815 | 100 | Minus |
3L | 28110227 | 3L | 16320004..16320382 | 35..392 | 1360 | 91.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:06:17 has no hits.
BS18076.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:21 Download gff for
BS18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-RA | 1..375 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:05 Download gff for
BS18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-RA | 67..434 | 22..389 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:19 Download gff for
BS18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-RA | 73..440 | 22..389 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:21 Download gff for
BS18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-RA | 57..436 | 12..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:55 Download gff for
BS18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-RA | 73..440 | 22..389 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:55 Download gff for
BS18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16319027..16319391 | 22..389 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:19 Download gff for
BS18076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16312127..16312491 | 22..389 | 98 | | Minus |
BS18076.3prime Sequence
405 bp (405 high quality bases) assembled on 2007-06-06
> BS18076.3prime
ATGGTCTAGAAAGCTTTTAGTGGTGCAGGGTGTAGGCCAGGGGAGCGGAG
TGCACCACCGACTTGACGAGGGGAGCTGAGTGGACCAGAGGCACAGAGTG
GACGACTGGAGCGGCGTGGACAACGGGCACGGAGTGAACCACTGGAGCAG
CGTGGACGGCAACGGCGGGATGGGAGTAGGTGGTGGTCTTCACGATGGGA
GCAACCACTGGCTGCACCACCGCCTTGCTGTGCACCTGGGTGATGCTCTG
GTGGGAAACCGCCGAGGGAGCAGAGTGCACCACCGATCCAACCTTGGCCA
GAACGGGCTCGTGCACCACATGGTGAGTCTCGATGAGACCAGCACTGGCG
GTGGCGACCAGGAGAGCGATGACAGCAACAAATTTGAACATGTCGACTGA
TAACT
BS18076.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13041-PA | 375 | CG13041-RA | 1..375 | 391..17 | 1875 | 100 | Minus |
CG13060-PA | 396 | CG13060-RA | 19..296 | 373..96 | 1315 | 98.9 | Minus |
CG13060-PA | 396 | CG13060-RA | 331..396 | 82..17 | 255 | 95.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 14:13:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13041-RA | 513 | CG13041-RA | 68..442 | 391..17 | 1875 | 100 | Minus |
CG13060-RA | 539 | CG13060-RA | 71..467 | 391..16 | 1450 | 91.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 14:13:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16319025..16319387 | 17..379 | 1815 | 100 | Plus |
3L | 28110227 | 3L | 16320004..16320382 | 373..16 | 1360 | 91.8 | Minus |
Blast to na_te.dros performed on 2015-02-05 14:13:18 has no hits.
BS18076.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:56 Download gff for
BS18076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-PA | 1..375 | 17..391 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:03 Download gff for
BS18076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-RA | 63..442 | 17..396 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:18:01 Download gff for
BS18076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-RA | 63..442 | 17..396 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:18:01 Download gff for
BS18076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16319025..16319387 | 17..379 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:03 Download gff for
BS18076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16312125..16312487 | 17..379 | 100 | <- | Plus |
BS18076.5prime Sequence
405 bp (405 high quality bases) assembled on 2007-06-06
> BS18076.5prime
GAAGTTATCAGTCGACATGTTCAAATTTGTTGCTGTCATCGCTCTCCTGG
TCGCCACCGCCAGTGCTGGTCTCATCGAGACTCACCATGTGGTGCACGAG
CCCGTTCTGGCCAAGGTTGGATCGGTGGTGCACTCTGCTCCCTCGGCGGT
TTCCCACCAGAGCATCACCCAGGTGCACAGCAAGGCGGTGGTGCAGCCAG
TGGTTGCTCCCATCGTGAAGACCACCACCTACTCCCATCCCGCCGTTGCC
GTCCACGCTGCTCCAGTGGTTCACTCCGTGCCCGTTGTCCACGCCGCTCC
AGTCGTCCACTCTGTGCCTCTGGTCCACTCAGCTCCCCTCGTCAAGTCGG
TGGTGCACTCCGCTCCCCTGGCCTACACCCTGCACCACTAAAAGCTTTCT
AGACC
BS18076.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:06:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13041-PA | 375 | CG13041-RA | 1..375 | 17..391 | 1875 | 100 | Plus |
CG13060-PA | 396 | CG13060-RA | 19..296 | 35..312 | 1315 | 98.9 | Plus |
CG13060-PA | 396 | CG13060-RA | 331..396 | 326..391 | 255 | 95.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:51:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13041-RA | 513 | CG13041-RA | 68..442 | 17..391 | 1875 | 100 | Plus |
CG13060-RA | 539 | CG13060-RA | 71..467 | 17..392 | 1450 | 91.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16319025..16319387 | 391..29 | 1815 | 100 | Minus |
3L | 28110227 | 3L | 16320004..16320382 | 35..392 | 1360 | 91.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:51:33 has no hits.
BS18076.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:01 Download gff for
BS18076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-PA | 1..375 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:22:22 Download gff for
BS18076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-RA | 63..442 | 12..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:24:46 Download gff for
BS18076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-RA | 63..442 | 12..391 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:24:46 Download gff for
BS18076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16319025..16319387 | 29..391 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:22:22 Download gff for
BS18076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16312125..16312487 | 29..391 | 100 | <- | Minus |
BS18076.pep Sequence
Translation from 16 to 390
> BS18076.pep
MFKFVAVIALLVATASAGLIETHHVVHEPVLAKVGSVVHSAPSAVSHQSI
TQVHSKAVVQPVVAPIVKTTTYSHPAVAVHAAPVVHSVPVVHAAPVVHSV
PLVHSAPLVKSVVHSAPLAYTLHH*
BS18076.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:58:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13041-PA | 124 | CG13041-PA | 1..124 | 1..124 | 621 | 100 | Plus |
CG13060-PA | 131 | CG13060-PA | 1..131 | 1..124 | 584 | 90.8 | Plus |
CG13044-PA | 155 | CG13044-PA | 1..131 | 1..121 | 264 | 50 | Plus |
CG13040-PB | 185 | CG13040-PB | 1..144 | 1..124 | 236 | 45.5 | Plus |
CG13040-PA | 185 | CG13040-PA | 1..144 | 1..124 | 236 | 45.5 | Plus |