Clone Sequence Records
BS18077.complete Sequence
2078 bp assembled on 2009-12-07
GenBank Submission: KX806015
> BS18077.complete
GAAGTTATCAGTCGACATGAACGACCTCAAGCCAGCTACAAGTTATAGGA
GCACCTCGCTCCACGACGCCGTCAAGCTGCGCCTGGATGAGCCATCATCC
TTTTCACAGACAGTCCCGCCACAGACGATTCCAGAATTCTTCAAGGAATC
GTGCGAGAAGTATTCGGATCTGCCCGCCTTGGTGTGGGAAACCCCAGGAT
CTGGGAACGATGGTTGGACCACTCTTACGTTTGGCGAGTACCAGGAGCGC
GTGGAGCAAGCGGCGCTGATGCTGCTGAGCGTGGGAGTCGAGGAACGCAG
TTCGGTGGGCATTCTGGCCTTCAATTGTCCCGAGTGGTTCTTCGCGGAAT
TTGGTGCTTTGAGAGCTGGAGCTGTTGTAGCCGGAGTTTATCCGAGCAAT
TCGGCTGAGGCCGTTCATCACGTCCTAGCCACAGGAGAGTCATCCGTTTG
CGTAGTGGACGACGCCCAGCAGATGGCCAAGCTGAGGGCCATCAAGGAAC
GCCTGCCACGTCTTAAGGCTGTAATCCAGTTGCACGGACCATTTGAAGCC
TTTGTCGATCACGAGCCCGGTTACTTTAGCTGGCAGAAACTCCAGGAGCA
GACCTTCTCCAGCGAGCTGAAAGAGGAACTGCTGGCCCGTGAGAGCCGGA
TTCGTGCCAACGAGTGTGCCATGCTGATCTTCACCTCGGGCACAGTGGGT
ATGCCAAAGGCAGTGATGCTATCCCACGACAACCTCGTGTTCGACACAAA
GTCCGCAGCCGCACACATGCAAGATATCCAAGTTGGCAAGGAGAGTTTTG
TGAGCTACCTTCCGCTGAGCCATGTGGCTGCCCAGATTTTCGATGTGTTC
CTGGGTCTTTCCCATGCCGGATGCGTCACATTTGCCGACAAGGACGCACT
GAAGGGAACGCTGATCAAGACCTTTCGCAAGGCGAGGCCAACGAAAATGT
TCGGCGTTCCGCGCGTCTTCGAGAAACTTCAAGAGCGTCTGGTGGCCGCG
GAGGCCAAGGCGAGACCTTACTCCAGATTACTTCTAGCAAGAGCTAGAGC
TGCTGTCGCTGAACACCAAACAACGCTGATGGCGGGGAAGTCCCCATCGA
TTTATGGCAACGCTAAATATTGGCTTGCGTGTCGAGTAGTAAAGCCAATA
CGTGAAATGATAGGTGTGGACAACTGCCGTGTTTTCTTCACCGGCGGAGC
ACCAACGTCGGAAGAGCTGAAGCAATTCTTCCTGGGACTGGACATCGCCT
TGGGCGAGTGCTATGGAATGTCGGAGACTAGTGGTGCTATCACCTTGAAT
GTCGATATAAGCAATCTGTATAGCGCTGGTCAAGCGTGCGAGGGAGTCAC
TTTGAAGATCCACGAACCCGATTGCAATGGTCAGGGAGAGATTCTGATGC
GGGGTCGCTTGGTTTTCATGGGCTACTTGGGACTGCCGGATAAGACTGAG
GAAACGGTCAAAGAGGATGGCTGGCTGCATTCCGGTGACTTGGGCTACAT
CGATCCCAAGGGTAATCTAATTATATCCGGTCGACTCAAGGAGCTGATCA
TCACCGCTGGCGGGGAGAATATTCCACCTGTGCACATCGAGGAGCTGATC
AAAAAGGAGCTTCCCTGCGTGAGCAATGTGCTACTTATCGGCGATCATCG
AAAGTATCTCACCGTCCTGCTGTCCTTGAAGACGAAATGCGATGCAAAGA
CTGGAATTCCACTGGATGCTCTGCGTGAGGAGACAATCGAATGGCTGCGG
GACCTGGATATCCATGAGACCCGTCTCTCCGAACTCCTAAACATTCCAGC
CGATCTCCAGCTGCCCAATGATACTGCCGCTCTGGCAGCTACCTTGGAGA
TCACCGCCAAACCTAAGCTCCTGGAAGCCATCGAAGAGGGCATCAAGCGA
GCGAATAAGTATGCCATTTCAAATGCTCAAAAGGTGCAAAAGTTTGCCCT
CATTGCTCATGAGTTTTCCGTGGCCACCGGAGAGCTGGGTCCCACGCTGA
AAATCAGGCGGAATATTGTCCACGCCAAATATGCCAAAGTCATCGAGCGT
CTGTACAAGTAAAAGCTTTCTAGACCAT
BS18077.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4500-RA | 2046 | CG4500-PA | 1..2046 | 17..2062 | 10230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4500-RA | 2206 | CG4500-RA | 31..2078 | 16..2063 | 10240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14027031..14028102 | 16..1087 | 5360 | 100 | Plus |
| 2L | 23513712 | 2L | 14028263..14029240 | 1086..2063 | 4890 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:02:49 has no hits.
BS18077.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:55 Download gff for
BS18077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-RA | 23..2066 | 17..2060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:04:31 Download gff for
BS18077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-RA | 32..2075 | 17..2060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:32 Download gff for
BS18077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-RA | 23..2066 | 17..2060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:43 Download gff for
BS18077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-RA | 32..2075 | 17..2060 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:43 Download gff for
BS18077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14027032..14028101 | 17..1086 | 100 | -> | Plus |
| 2L | 14028264..14029237 | 1087..2060 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:04:31 Download gff for
BS18077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14027032..14028101 | 17..1086 | 100 | -> | Plus |
| arm_2L | 14028264..14029237 | 1087..2060 | 100 | | Plus |
BS18077.3prime Sequence
903 bp (804 high quality bases) assembled on 2007-06-06
> BS18077.3prime
ATGGTCTAGAAAGCTTTTACTTGTACAGACGCTCGATGACTTTGGCATAT
TTGGCGTGGACAATATTCCGCCTGATTTTCAGCGTGGGACCCAGCTCTCC
GGTGGCCACGGAAAACTCATGAGCAATGAGGGCAAACTTTTGCACCTTTT
GAGCATTTGAAATGGCATACTTATTCGCTCGCTTGATGCCCTCTTCGATG
GCTTCCAGGAGCTTAGGTTTGGCGGTGATCTCCAAGGTAGCTGCCAGAGC
GGCAGTATCATTGGGCAGCTGGAGATCGGCTGGAATGTTTAGGAGTTCGG
AGAGACGGGTCTCATGGATATCCAGGTCCCGCAGCCATTCGATTGTCTCC
TCACGCAGAGCATCCAGTGGAATTCCAGTCTTTGCATCGCATTTCGTCTT
CAAGGACAGCAGGACGGTGAGATACTTTCGATGATCGCCGATAAGTAGCA
CATTGCTCACGCAGGGAAGCTCCTTTTTGATCAGCTCCTCGATGTGCACA
GGTGGAATATTCTCCCCGCCAGCGGTGATGATCAGCTCCTTGAGTCGACC
GGATATAATTAGATTACCCTTGGGATCGATGTAGCCCAAGTCACCGGAAT
GCAGCCAGCCATCCTCTTTGACCGTTTCCTCAGTCTTATCCGGCAGTCCC
AAGTAGCCCATGAAAACCAAGCGACCCCGCATCAGAATCTCTCCCTGACC
ATTGCAATCGGGTTCGTGGATCTTCAAAGTGACTCCCTCGCACGCTTGAC
CAGCGCTATACAGATTGCTTATATCGACATTCAAGGTGATAGCACCACTA
GTCTCCGACATTCCATAGCACTCGGCCAAGGCGATGTCCAGTCCCAGGAA
GAATTGCTTCAGCTCTTCCGACGTTGGTGCTCCGCCGGTGAAGAAAACAC
GGC
BS18077.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4500-PA | 2046 | CG4500-RA | 1160..2046 | 903..17 | 4410 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4500-RA | 2206 | CG4500-RA | 1191..2078 | 903..16 | 4425 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14028353..14029240 | 903..16 | 4425 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:18:44 has no hits.
BS18077.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:05 Download gff for
BS18077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-PA | 1160..2046 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:49:19 Download gff for
BS18077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-RA | 1191..2086 | 8..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:21 Download gff for
BS18077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-RA | 1191..2086 | 8..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:21 Download gff for
BS18077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14028353..14029248 | 8..903 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:49:19 Download gff for
BS18077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14028353..14029248 | 8..903 | 99 | | Minus |
BS18077.5prime Sequence
887 bp (745 high quality bases) assembled on 2007-06-06
> BS18077.5prime
GAAGTTATCAGTCGACATGAACGACCTCAAGCCAGCTACAAGTTATAGGA
GCACCTCGCTCCACGACGCCGTCAAGCTGCGCCTGGATGAGCCATCATCC
TTTTCACAGACAGTCCCGCCACAGACGATTCCAGAATTCTTCAAGGAATC
GTGCGAGAAGTATTCGGATCTGCCCGCCTTGGTGTGGGAAACCCCAGGAT
CTGGGAACGATGGTTGGACCACTCTTACGTTTGGCGAGTACCAGGAGCGC
GTGGAGCAAGCGGCGCTGATGCTGCTGAGCGTGGGAGTCGAGGAACGCAG
TTCGGTGGGCATTCTGGCCTTCAATTGTCCCGAGTGGTTCTTCGCGGAAT
TTGGTGCTTTGAGAGCTGGAGCTGTTGTAGCCGGAGTTTATCCGAGCAAT
TCGGCTGAGGCCGTTCATCACGTCCTAGCCACAGGAGAGTCATCCGTTTG
CGTAGTGGACGACGCCCAGCAGATGGCCAAGCTGAGGGCCATCAAGGAAC
GCCTGCCACGTCTTAAGGCTGTAATCCAGTTGCACGGACCATTTGAAGCC
TTTGTCGATCACGAGCCCGGTTACTTTAGCTGGCAGAAACTCCAGGAGCA
GACCTTCTCCAGCGAGCTGAAAGAGGAACTGCTGGCCCGTGAGAGCCGGA
TTCGTGCCAACGAGTGTGCCATGCTGATCTTCACCTCGGGCACAGTGGGT
ATGCCAAAGGCAGTGATGCTATCCCACGACAACCTCGTGTTCGACACAAA
GTCCGCAGCCGCACACATGCAAGATATCCAAGTTGGCAAGGAGAGTTTTG
TGAGCTACCTTCCGCTGAAGCATGTGGCTGCCCAGATTTTCGATGTGTTC
CTGGGTCTTCCCATGCCGGATGCGTCACATTTGCCGA
BS18077.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4500-PA | 2046 | CG4500-RA | 1..843 | 17..859 | 4165 | 99.7 | Plus |
| CG4500-PA | 2046 | CG4500-RA | 843..872 | 858..887 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4500-RA | 2206 | CG4500-RA | 31..903 | 16..887 | 4310 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14027031..14027903 | 16..887 | 4285 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:38:46 has no hits.
BS18077.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:10 Download gff for
BS18077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-PA | 1..871 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:53:40 Download gff for
BS18077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-RA | 23..902 | 8..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:45 Download gff for
BS18077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-RA | 23..902 | 8..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:45 Download gff for
BS18077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14027023..14027902 | 8..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:53:40 Download gff for
BS18077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14027023..14027902 | 8..886 | 99 | | Plus |
BS18077.pep Sequence
Translation from 16 to 2061
> BS18077.pep
MNDLKPATSYRSTSLHDAVKLRLDEPSSFSQTVPPQTIPEFFKESCEKYS
DLPALVWETPGSGNDGWTTLTFGEYQERVEQAALMLLSVGVEERSSVGIL
AFNCPEWFFAEFGALRAGAVVAGVYPSNSAEAVHHVLATGESSVCVVDDA
QQMAKLRAIKERLPRLKAVIQLHGPFEAFVDHEPGYFSWQKLQEQTFSSE
LKEELLARESRIRANECAMLIFTSGTVGMPKAVMLSHDNLVFDTKSAAAH
MQDIQVGKESFVSYLPLSHVAAQIFDVFLGLSHAGCVTFADKDALKGTLI
KTFRKARPTKMFGVPRVFEKLQERLVAAEAKARPYSRLLLARARAAVAEH
QTTLMAGKSPSIYGNAKYWLACRVVKPIREMIGVDNCRVFFTGGAPTSEE
LKQFFLGLDIALGECYGMSETSGAITLNVDISNLYSAGQACEGVTLKIHE
PDCNGQGEILMRGRLVFMGYLGLPDKTEETVKEDGWLHSGDLGYIDPKGN
LIISGRLKELIITAGGENIPPVHIEELIKKELPCVSNVLLIGDHRKYLTV
LLSLKTKCDAKTGIPLDALREETIEWLRDLDIHETRLSELLNIPADLQLP
NDTAALAATLEITAKPKLLEAIEEGIKRANKYAISNAQKVQKFALIAHEF
SVATGELGPTLKIRRNIVHAKYAKVIERLYK*
BS18077.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:19:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4500-PA | 681 | CG4500-PA | 1..681 | 1..681 | 3495 | 100 | Plus |
| bgm-PC | 666 | CG4501-PC | 14..665 | 2..680 | 1522 | 44.2 | Plus |
| bgm-PA | 666 | CG4501-PA | 14..665 | 2..680 | 1522 | 44.2 | Plus |
| CG3961-PD | 654 | CG3961-PD | 52..651 | 36..681 | 373 | 25.8 | Plus |
| CG3961-PE | 666 | CG3961-PE | 64..663 | 36..681 | 373 | 25.8 | Plus |
