Clone Sequence Records
BS18080.3prime Sequence
878 bp (785 high quality bases) assembled on 2007-06-06
> BS18080.3prime
ATGGTCTAGAAAGCTTTTACAAGTAGCCCAACTCCTTGGTCTTTTCAATT
AAAGCCAGCATTCCAACCATTAGCTCCTCGCAGTTGGGAATGATCTGCAC
TGGTGGCAGGATAAAGCCGTAGCGACCCTTATCACGGTACTCGATTGTGT
AACCGATCTTCTTGCCCAGCTCGTTGAACACCCAGTCCACGGAGGTTCCA
GTGGCCACATAAAGCACATCAGCTGTAGAGCCATACTGGTAGACGGTTCC
GTACGGCAGTGCTTCAATGGCATCGGCAAAAGCTTTGCCAATAGTCAGGA
TATCATTGTAATTTTCTGGGAACTCCTCATTGGTATGACCGTAGGGCGAA
AGCAAATACTGTCCATATGAGTGGAAGGATATGTACACACTAATTTGGTC
CTGGATTTTGGTCAAGTACTCGACCAAGGCCTTGGCTTCAGGCTCAGATT
CAGGGTTATCCCCAGCAAAAGTCTCACTGCAGGGATTGTCAGAGGCTCCA
TTGTTCTGGAGCCAATAGGAGTCGAAGTTCCTATTGGCGTCAGCTCCAAT
GCATGCATTCGTGGCATGTGGCTGACGTGTTTTGCGCCACATACGATCCT
TCTTGTGTGAGTACTCAAAACCATCTACATTGAACACGGGAATTATATGC
CAATCATAGTTATCGGCCAAACTTCGCACATCGGCATCCTCTGAGGTCAA
AAGCTGATTGATGAACCATGTAGCACTGGCCGAAGTTATCCATTCTCTGG
CATGAATGTTGGACTCGATGAAAATGCCAGGATTGCCAGCATTGTGGGAG
ATCTTAATGCCTCTAATGGTTCTCCCCTCGTAGGACTTGCCAACAATGAA
CTCCTCGGTCACCGAGGGATAAGCATTT
BS18080.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18585-PA | 1269 | CG18585-RA | 408..1269 | 878..17 | 4285 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18585-RB | 1423 | CG18585-RB | 426..1291 | 878..13 | 4300 | 99.8 | Minus |
CG18585-RA | 1358 | CG18585-RA | 426..1291 | 878..13 | 4300 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7689720..7690109 | 211..600 | 1950 | 100 | Plus |
2L | 23513712 | 2L | 7690171..7690451 | 598..878 | 1390 | 99.6 | Plus |
2L | 23513712 | 2L | 7689443..7689640 | 13..210 | 975 | 99.5 | Plus |
Blast to na_te.dros performed 2015-02-11 17:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 2827..2862 | 286..251 | 108 | 77.8 | Minus |
BS18080.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:33 Download gff for
BS18080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-PA | 408..1269 | 17..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:57:16 Download gff for
BS18080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-RA | 426..1291 | 13..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:08 Download gff for
BS18080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-RA | 426..1291 | 13..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:08 Download gff for
BS18080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7689443..7689640 | 13..210 | 99 | <- | Plus |
2L | 7689720..7690107 | 211..598 | 100 | <- | Plus |
2L | 7690172..7690451 | 599..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:57:16 Download gff for
BS18080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7689443..7689640 | 13..210 | 99 | <- | Plus |
arm_2L | 7689720..7690107 | 211..598 | 100 | <- | Plus |
arm_2L | 7690172..7690451 | 599..878 | 99 | | Plus |
BS18080.5prime Sequence
860 bp (717 high quality bases) assembled on 2007-06-06
> BS18080.5prime
GAAGTTATCAGTCGACATGCGTCTGCTTTGGTTGCTTGCCACGCTGGTGG
CTCTAACAAGTGCTGGTATCCTTAAGGACTCTCCCAAAGAGCGTTATGAT
AACTTCAGGGTATACAAGCTCACTATCCAGAACAAAATTCAATTGGCTGC
GATCGAGAAAATTGGCGAGCTAACGAAGAAGTACAATATTTGGAAGGAGT
ATGACGAGCGAAGTAGGCAGATTGATATTATGGTTAGTCCTGGAGAACTT
AACCACTTTCAGGAGCTGCTTAAATTCAATAATATCAGCAGTGAGCTTAT
GATCGAGAATGTCCAAGAGCGTATCGACGAGGAGCAAGTCACGCCGACTG
CAGATAGCGCCACCTTCGGCTGGACGAAGTACTACGAGCTGGAAGAGATT
GAGGCCTGGCTGGACGAGATTCTAAATGCTTATCCCTCGGTGACCGAGGA
GTTCATTGTTGGCAAGTCCTACGAGGGGAGAACCATTAGAGGCATTAAGA
TCTCCCACAAGGCTGGCAATCCTGGCATTTTCATCGAGTCCAACATTCAT
GCCAGAGAATGGATAACTTCGGCCAGTGCTACATGGTTCATCAATCAGCT
TTTGACCTCAGAGGATGCCGATGTGCGAAGTTTGGCCGATAACTATGATT
GGCATATAATTCCCGTGTTCAATGTAGATGGTTTTGAGTACTCACACAAG
AAGGATCGTATGTGGCGCAAAACACGTCAGCCACATGCCACGAATGCATG
CATTGGAGCTGACGCCAATAGGAACTTCGACTCCTATTGGCTCCAGAACA
TGGAGCCTCTGAACATCCTGCAGTGAGACTTTTTGCTGGGATAACCCTGA
ATCTGAGCCT
BS18080.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18585-PA | 1269 | CG18585-RA | 1..784 | 17..800 | 3920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:09:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18585-RB | 1423 | CG18585-RB | 19..864 | 17..860 | 4105 | 99.3 | Plus |
CG18585-RA | 1358 | CG18585-RA | 19..864 | 17..860 | 4105 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:09:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7690171..7690556 | 704..319 | 1930 | 100 | Minus |
2L | 23513712 | 2L | 7690879..7691043 | 181..17 | 825 | 100 | Minus |
2L | 23513712 | 2L | 7690682..7690821 | 319..180 | 700 | 100 | Minus |
2L | 23513712 | 2L | 7689949..7690109 | 860..702 | 615 | 95 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:09:29 has no hits.
BS18080.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:38 Download gff for
BS18080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-PA | 1..846 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:12:39 Download gff for
BS18080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-RA | 14..864 | 12..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:10:29 Download gff for
BS18080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-RA | 14..864 | 12..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:10:29 Download gff for
BS18080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7689949..7690107 | 704..860 | 96 | <- | Minus |
2L | 7690172..7690556 | 319..703 | 100 | <- | Minus |
2L | 7690683..7690819 | 182..318 | 100 | <- | Minus |
2L | 7690879..7691048 | 12..181 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:12:39 Download gff for
BS18080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7690879..7691048 | 12..181 | 98 | | Minus |
arm_2L | 7689949..7690107 | 704..860 | 96 | <- | Minus |
arm_2L | 7690172..7690556 | 319..703 | 100 | <- | Minus |
arm_2L | 7690683..7690819 | 182..318 | 100 | <- | Minus |
BS18080.complete Sequence
1301 bp assembled on 2009-12-07
GenBank Submission: KX802091
> BS18080.complete
GAAGTTATCAGTCGACATGCGTCTGCTTTGGTTGCTTGCCACGCTGGTGG
CTCTAACAAGTGCTGGTATCCTTAAGGACTCTCCCAAAGAGCGTTATGAT
AACTTCAGGGTATACAAGCTCACTATCCAGAACAAAATTCAATTGGCTGC
GATCGAGAAAATTGGCGAGCTAACGAAGAAGTACAATATTTGGAAGGAGT
ATGACGAGCGAAGTAGGCAGATTGATATTATGGTTAGTCCTGGAGAACTT
AACCACTTTCAGGAGCTGCTTAAATTCAATAATATCAGCAGTGAGCTTAT
GATCGAGAATGTCCAAGAGCGTATCGACGAGGAGCAAGTCACGCCGACTG
CAGATAGCGCCACCTTCGGCTGGACGAAGTACTACGAGCTGGAAGAGATT
GAGGCCTGGCTGGACGAGATTCTAAATGCTTATCCCTCGGTGACCGAGGA
GTTCATTGTTGGCAAGTCCTACGAGGGGAGAACCATTAGAGGCATTAAGA
TCTCCCACAAGGCTGGCAATCCTGGCATTTTCATCGAGTCCAACATTCAT
GCCAGAGAATGGATAACTTCGGCCAGTGCTACATGGTTCATCAATCAGCT
TTTGACCTCAGAGGATGCCGATGTGCGAAGTTTGGCCGATAACTATGATT
GGCATATAATTCCCGTGTTCAATGTAGATGGTTTTGAGTACTCACACAAG
AAGGATCGTATGTGGCGCAAAACACGTCAGCCACATGCCACGAATGCATG
CATTGGAGCTGACGCCAATAGGAACTTCGACTCCTATTGGCTCCAGAACA
ATGGAGCCTCTGACAATCCCTGCAGTGAGACTTTTGCTGGGGATAACCCT
GAATCTGAGCCTGAAGCCAAGGCCTTGGTCGAGTACTTGACCAAAATCCA
GGACCAAATTAGTGTGTACATATCCTTCCACTCATATGGACAGTATTTGC
TTTCGCCCTACGGTCATACCAATGAGGAGTTCCCAGAAAATTACAATGAT
ATCCTGACTATTGGCAAAGCTTTTGCCGATGCCATTGAAGCACTGCCGTA
CGGAACCGTCTACCAGTATGGCTCTACAGCTGATGTGCTTTATGTGGCCA
CTGGAACCTCCGTGGACTGGGTGTTCAACGAGCTGGGCAAGAAGATCGGT
TACACAATCGAGTACCGTGATAAGGGTCGCTACGGCTTTATCCTGCCACC
AGTGCAGATCATTCCCAACTGCGAGGAGCTAATGGTTGGAATGCTGGCTT
TAATTGAAAAGACCAAGGAGTTGGGCTACTTGTAAAAGCTTTCTAGACCA
T
BS18080.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:36:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18585-RB | 1269 | CG18585-PB | 1..1269 | 17..1285 | 6345 | 100 | Plus |
CG18585-RA | 1269 | CG18585-PA | 1..1269 | 17..1285 | 6345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18585-RB | 1423 | CG18585-RB | 19..1291 | 17..1289 | 6350 | 99.9 | Plus |
CG18585-RA | 1358 | CG18585-RA | 19..1291 | 17..1289 | 6350 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7689720..7690109 | 1091..702 | 1950 | 100 | Minus |
2L | 23513712 | 2L | 7690171..7690556 | 704..319 | 1930 | 100 | Minus |
2L | 23513712 | 2L | 7689443..7689640 | 1289..1092 | 975 | 99.5 | Minus |
2L | 23513712 | 2L | 7690879..7691043 | 181..17 | 825 | 100 | Minus |
2L | 23513712 | 2L | 7690682..7690821 | 319..180 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:36:07 has no hits.
BS18080.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:56 Download gff for
BS18080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-RA | 1..1269 | 17..1285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:46 Download gff for
BS18080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-RA | 15..1281 | 17..1283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:22 Download gff for
BS18080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-RA | 19..1285 | 17..1283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:56 Download gff for
BS18080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-RA | 10..1287 | 12..1289 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:28 Download gff for
BS18080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-RA | 19..1285 | 17..1283 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:28 Download gff for
BS18080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7690683..7690819 | 182..318 | 100 | <- | Minus |
2L | 7690879..7691043 | 17..181 | 100 | | Minus |
2L | 7689449..7689640 | 1092..1283 | 100 | <- | Minus |
2L | 7690172..7690556 | 319..703 | 100 | <- | Minus |
2L | 7689720..7690107 | 704..1091 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:22 Download gff for
BS18080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7689449..7689640 | 1092..1283 | 100 | <- | Minus |
arm_2L | 7689720..7690107 | 704..1091 | 100 | <- | Minus |
arm_2L | 7690172..7690556 | 319..703 | 100 | <- | Minus |
arm_2L | 7690683..7690819 | 182..318 | 100 | <- | Minus |
arm_2L | 7690879..7691043 | 17..181 | 100 | | Minus |
BS18080.pep Sequence
Translation from 16 to 1284
> BS18080.pep
MRLLWLLATLVALTSAGILKDSPKERYDNFRVYKLTIQNKIQLAAIEKIG
ELTKKYNIWKEYDERSRQIDIMVSPGELNHFQELLKFNNISSELMIENVQ
ERIDEEQVTPTADSATFGWTKYYELEEIEAWLDEILNAYPSVTEEFIVGK
SYEGRTIRGIKISHKAGNPGIFIESNIHAREWITSASATWFINQLLTSED
ADVRSLADNYDWHIIPVFNVDGFEYSHKKDRMWRKTRQPHATNACIGADA
NRNFDSYWLQNNGASDNPCSETFAGDNPESEPEAKALVEYLTKIQDQISV
YISFHSYGQYLLSPYGHTNEEFPENYNDILTIGKAFADAIEALPYGTVYQ
YGSTADVLYVATGTSVDWVFNELGKKIGYTIEYRDKGRYGFILPPVQIIP
NCEELMVGMLALIEKTKELGYL*
BS18080.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:58:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18585-PB | 422 | CG18585-PB | 1..422 | 1..422 | 2230 | 100 | Plus |
CG18585-PA | 422 | CG18585-PA | 1..422 | 1..422 | 2230 | 100 | Plus |
CG7025-PA | 429 | CG7025-PA | 8..423 | 6..422 | 1303 | 55.4 | Plus |
CG14820-PA | 416 | CG14820-PA | 2..416 | 6..422 | 952 | 45.2 | Plus |
CG12374-PA | 422 | CG12374-PA | 1..419 | 1..420 | 790 | 38.6 | Plus |