Clone BS18080 Report

Search the DGRC for BS18080

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG18585-RA
Protein status:BS18080.pep: full length peptide match
Sequenced Size:1301

Clone Sequence Records

BS18080.3prime Sequence

878 bp (785 high quality bases) assembled on 2007-06-06

> BS18080.3prime
ATGGTCTAGAAAGCTTTTACAAGTAGCCCAACTCCTTGGTCTTTTCAATT
AAAGCCAGCATTCCAACCATTAGCTCCTCGCAGTTGGGAATGATCTGCAC
TGGTGGCAGGATAAAGCCGTAGCGACCCTTATCACGGTACTCGATTGTGT
AACCGATCTTCTTGCCCAGCTCGTTGAACACCCAGTCCACGGAGGTTCCA
GTGGCCACATAAAGCACATCAGCTGTAGAGCCATACTGGTAGACGGTTCC
GTACGGCAGTGCTTCAATGGCATCGGCAAAAGCTTTGCCAATAGTCAGGA
TATCATTGTAATTTTCTGGGAACTCCTCATTGGTATGACCGTAGGGCGAA
AGCAAATACTGTCCATATGAGTGGAAGGATATGTACACACTAATTTGGTC
CTGGATTTTGGTCAAGTACTCGACCAAGGCCTTGGCTTCAGGCTCAGATT
CAGGGTTATCCCCAGCAAAAGTCTCACTGCAGGGATTGTCAGAGGCTCCA
TTGTTCTGGAGCCAATAGGAGTCGAAGTTCCTATTGGCGTCAGCTCCAAT
GCATGCATTCGTGGCATGTGGCTGACGTGTTTTGCGCCACATACGATCCT
TCTTGTGTGAGTACTCAAAACCATCTACATTGAACACGGGAATTATATGC
CAATCATAGTTATCGGCCAAACTTCGCACATCGGCATCCTCTGAGGTCAA
AAGCTGATTGATGAACCATGTAGCACTGGCCGAAGTTATCCATTCTCTGG
CATGAATGTTGGACTCGATGAAAATGCCAGGATTGCCAGCATTGTGGGAG
ATCTTAATGCCTCTAATGGTTCTCCCCTCGTAGGACTTGCCAACAATGAA
CTCCTCGGTCACCGAGGGATAAGCATTT

BS18080.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG18585-PA 1269 CG18585-RA 408..1269 878..17 4285 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG18585-RB 1423 CG18585-RB 426..1291 878..13 4300 99.8 Minus
CG18585-RA 1358 CG18585-RA 426..1291 878..13 4300 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7689720..7690109 211..600 1950 100 Plus
2L 23513712 2L 7690171..7690451 598..878 1390 99.6 Plus
2L 23513712 2L 7689443..7689640 13..210 975 99.5 Plus
Blast to na_te.dros performed 2015-02-11 17:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 2827..2862 286..251 108 77.8 Minus

BS18080.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:33 Download gff for BS18080.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18585-PA 408..1269 17..878 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:57:16 Download gff for BS18080.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 426..1291 13..878 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:08 Download gff for BS18080.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 426..1291 13..878 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:08 Download gff for BS18080.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7689443..7689640 13..210 99 <- Plus
2L 7689720..7690107 211..598 100 <- Plus
2L 7690172..7690451 599..878 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:57:16 Download gff for BS18080.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7689443..7689640 13..210 99 <- Plus
arm_2L 7689720..7690107 211..598 100 <- Plus
arm_2L 7690172..7690451 599..878 99   Plus

BS18080.5prime Sequence

860 bp (717 high quality bases) assembled on 2007-06-06

> BS18080.5prime
GAAGTTATCAGTCGACATGCGTCTGCTTTGGTTGCTTGCCACGCTGGTGG
CTCTAACAAGTGCTGGTATCCTTAAGGACTCTCCCAAAGAGCGTTATGAT
AACTTCAGGGTATACAAGCTCACTATCCAGAACAAAATTCAATTGGCTGC
GATCGAGAAAATTGGCGAGCTAACGAAGAAGTACAATATTTGGAAGGAGT
ATGACGAGCGAAGTAGGCAGATTGATATTATGGTTAGTCCTGGAGAACTT
AACCACTTTCAGGAGCTGCTTAAATTCAATAATATCAGCAGTGAGCTTAT
GATCGAGAATGTCCAAGAGCGTATCGACGAGGAGCAAGTCACGCCGACTG
CAGATAGCGCCACCTTCGGCTGGACGAAGTACTACGAGCTGGAAGAGATT
GAGGCCTGGCTGGACGAGATTCTAAATGCTTATCCCTCGGTGACCGAGGA
GTTCATTGTTGGCAAGTCCTACGAGGGGAGAACCATTAGAGGCATTAAGA
TCTCCCACAAGGCTGGCAATCCTGGCATTTTCATCGAGTCCAACATTCAT
GCCAGAGAATGGATAACTTCGGCCAGTGCTACATGGTTCATCAATCAGCT
TTTGACCTCAGAGGATGCCGATGTGCGAAGTTTGGCCGATAACTATGATT
GGCATATAATTCCCGTGTTCAATGTAGATGGTTTTGAGTACTCACACAAG
AAGGATCGTATGTGGCGCAAAACACGTCAGCCACATGCCACGAATGCATG
CATTGGAGCTGACGCCAATAGGAACTTCGACTCCTATTGGCTCCAGAACA
TGGAGCCTCTGAACATCCTGCAGTGAGACTTTTTGCTGGGATAACCCTGA
ATCTGAGCCT

BS18080.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG18585-PA 1269 CG18585-RA 1..784 17..800 3920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG18585-RB 1423 CG18585-RB 19..864 17..860 4105 99.3 Plus
CG18585-RA 1358 CG18585-RA 19..864 17..860 4105 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7690171..7690556 704..319 1930 100 Minus
2L 23513712 2L 7690879..7691043 181..17 825 100 Minus
2L 23513712 2L 7690682..7690821 319..180 700 100 Minus
2L 23513712 2L 7689949..7690109 860..702 615 95 Minus
Blast to na_te.dros performed on 2015-02-13 06:09:29 has no hits.

BS18080.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:38 Download gff for BS18080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18585-PA 1..846 17..860 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:12:39 Download gff for BS18080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 14..864 12..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:10:29 Download gff for BS18080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 14..864 12..860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:10:29 Download gff for BS18080.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7689949..7690107 704..860 96 <- Minus
2L 7690172..7690556 319..703 100 <- Minus
2L 7690683..7690819 182..318 100 <- Minus
2L 7690879..7691048 12..181 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:12:39 Download gff for BS18080.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7690879..7691048 12..181 98   Minus
arm_2L 7689949..7690107 704..860 96 <- Minus
arm_2L 7690172..7690556 319..703 100 <- Minus
arm_2L 7690683..7690819 182..318 100 <- Minus

BS18080.complete Sequence

1301 bp assembled on 2009-12-07

GenBank Submission: KX802091

> BS18080.complete
GAAGTTATCAGTCGACATGCGTCTGCTTTGGTTGCTTGCCACGCTGGTGG
CTCTAACAAGTGCTGGTATCCTTAAGGACTCTCCCAAAGAGCGTTATGAT
AACTTCAGGGTATACAAGCTCACTATCCAGAACAAAATTCAATTGGCTGC
GATCGAGAAAATTGGCGAGCTAACGAAGAAGTACAATATTTGGAAGGAGT
ATGACGAGCGAAGTAGGCAGATTGATATTATGGTTAGTCCTGGAGAACTT
AACCACTTTCAGGAGCTGCTTAAATTCAATAATATCAGCAGTGAGCTTAT
GATCGAGAATGTCCAAGAGCGTATCGACGAGGAGCAAGTCACGCCGACTG
CAGATAGCGCCACCTTCGGCTGGACGAAGTACTACGAGCTGGAAGAGATT
GAGGCCTGGCTGGACGAGATTCTAAATGCTTATCCCTCGGTGACCGAGGA
GTTCATTGTTGGCAAGTCCTACGAGGGGAGAACCATTAGAGGCATTAAGA
TCTCCCACAAGGCTGGCAATCCTGGCATTTTCATCGAGTCCAACATTCAT
GCCAGAGAATGGATAACTTCGGCCAGTGCTACATGGTTCATCAATCAGCT
TTTGACCTCAGAGGATGCCGATGTGCGAAGTTTGGCCGATAACTATGATT
GGCATATAATTCCCGTGTTCAATGTAGATGGTTTTGAGTACTCACACAAG
AAGGATCGTATGTGGCGCAAAACACGTCAGCCACATGCCACGAATGCATG
CATTGGAGCTGACGCCAATAGGAACTTCGACTCCTATTGGCTCCAGAACA
ATGGAGCCTCTGACAATCCCTGCAGTGAGACTTTTGCTGGGGATAACCCT
GAATCTGAGCCTGAAGCCAAGGCCTTGGTCGAGTACTTGACCAAAATCCA
GGACCAAATTAGTGTGTACATATCCTTCCACTCATATGGACAGTATTTGC
TTTCGCCCTACGGTCATACCAATGAGGAGTTCCCAGAAAATTACAATGAT
ATCCTGACTATTGGCAAAGCTTTTGCCGATGCCATTGAAGCACTGCCGTA
CGGAACCGTCTACCAGTATGGCTCTACAGCTGATGTGCTTTATGTGGCCA
CTGGAACCTCCGTGGACTGGGTGTTCAACGAGCTGGGCAAGAAGATCGGT
TACACAATCGAGTACCGTGATAAGGGTCGCTACGGCTTTATCCTGCCACC
AGTGCAGATCATTCCCAACTGCGAGGAGCTAATGGTTGGAATGCTGGCTT
TAATTGAAAAGACCAAGGAGTTGGGCTACTTGTAAAAGCTTTCTAGACCA
T

BS18080.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG18585-RB 1269 CG18585-PB 1..1269 17..1285 6345 100 Plus
CG18585-RA 1269 CG18585-PA 1..1269 17..1285 6345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG18585-RB 1423 CG18585-RB 19..1291 17..1289 6350 99.9 Plus
CG18585-RA 1358 CG18585-RA 19..1291 17..1289 6350 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7689720..7690109 1091..702 1950 100 Minus
2L 23513712 2L 7690171..7690556 704..319 1930 100 Minus
2L 23513712 2L 7689443..7689640 1289..1092 975 99.5 Minus
2L 23513712 2L 7690879..7691043 181..17 825 100 Minus
2L 23513712 2L 7690682..7690821 319..180 700 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:36:07 has no hits.

BS18080.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:56 Download gff for BS18080.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 1..1269 17..1285 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:46 Download gff for BS18080.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 15..1281 17..1283 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:22 Download gff for BS18080.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 19..1285 17..1283 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:56 Download gff for BS18080.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 10..1287 12..1289 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:28 Download gff for BS18080.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 19..1285 17..1283 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:28 Download gff for BS18080.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7690683..7690819 182..318 100 <- Minus
2L 7690879..7691043 17..181 100   Minus
2L 7689449..7689640 1092..1283 100 <- Minus
2L 7690172..7690556 319..703 100 <- Minus
2L 7689720..7690107 704..1091 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:22 Download gff for BS18080.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7689449..7689640 1092..1283 100 <- Minus
arm_2L 7689720..7690107 704..1091 100 <- Minus
arm_2L 7690172..7690556 319..703 100 <- Minus
arm_2L 7690683..7690819 182..318 100 <- Minus
arm_2L 7690879..7691043 17..181 100   Minus

BS18080.pep Sequence

Translation from 16 to 1284

> BS18080.pep
MRLLWLLATLVALTSAGILKDSPKERYDNFRVYKLTIQNKIQLAAIEKIG
ELTKKYNIWKEYDERSRQIDIMVSPGELNHFQELLKFNNISSELMIENVQ
ERIDEEQVTPTADSATFGWTKYYELEEIEAWLDEILNAYPSVTEEFIVGK
SYEGRTIRGIKISHKAGNPGIFIESNIHAREWITSASATWFINQLLTSED
ADVRSLADNYDWHIIPVFNVDGFEYSHKKDRMWRKTRQPHATNACIGADA
NRNFDSYWLQNNGASDNPCSETFAGDNPESEPEAKALVEYLTKIQDQISV
YISFHSYGQYLLSPYGHTNEEFPENYNDILTIGKAFADAIEALPYGTVYQ
YGSTADVLYVATGTSVDWVFNELGKKIGYTIEYRDKGRYGFILPPVQIIP
NCEELMVGMLALIEKTKELGYL*

BS18080.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG18585-PB 422 CG18585-PB 1..422 1..422 2230 100 Plus
CG18585-PA 422 CG18585-PA 1..422 1..422 2230 100 Plus
CG7025-PA 429 CG7025-PA 8..423 6..422 1303 55.4 Plus
CG14820-PA 416 CG14820-PA 2..416 6..422 952 45.2 Plus
CG12374-PA 422 CG12374-PA 1..419 1..420 790 38.6 Plus