Clone Sequence Records
BS18082.complete Sequence
1139 bp assembled on 2009-12-07
GenBank Submission: KX803752
> BS18082.complete
GAAGTTATCAGTCGACATGTCGACGGAGCCATCGGTGGCCAAGGATGCTG
TGCTGAAGCGCAGCGAGGCTCTGGCGGAAAACACGCCCCAAGTTAGTGGC
TACGATTTCAACGAAGGCTTAGACTACAGTAAGCTCTTCGAATCCTATGT
GAACACCGGGTTTCAGGCCACGAATCTTGGCCTGGCCATTCGGGAAATTA
ACAGAATGCTGGATTGCAGGGACCAGCCATTGGAAGCGGACCAAATAGAC
AGCCATGAAACAGACGACTTCATCCGTCGAAGAAGCAAGTGCACCGTATT
TTTGGGCTACACATCCAACTTGGTTTCGTCCGGACTGCGAGAGACCATTC
GCTTTCTGGCCGAGCACCGTATGATCGACTGCATTGTGACCACAGCTGGC
GGCGTCGAGGAGGACTTCATCAAGTGCTTGGCTCCCACGTTCATGGGTTC
ATTTGAGCTGAGTGGCAGGGATCTCCGCGAGCGTGGAATCAACAGAATTG
GCAACCTTCTGGTGCCGAACGATAATTACTGTAAGTTCGAGGACTGGGTG
ATGCCGCTGCTGGACGAGATGCTGGAGGAGCAAAAATCCCAGGGAACTAT
CTGGTCGCCGTCGAAGATTATTCATCGGTTGGGCGAACGGATTGGCGATC
CTAGTTCCATTTACTATTGGGCTGCCAAGAATCAAATACCAGTCTTTTGT
CCCGCCTTGACGGATGGCAGTCTGGGCGACATGATGTACTTTCACTCCTT
TCGACAACCTGGACTCGTGGTGGACATTCTGTCCGATCTGCGGAGGCTCA
ACACCATGGCTGTCAAGGCGGTCAACAGCGGGATGATCATCGTGGGCGGC
GGCGTTATCAAGCATCACATTTGTAATGCCAATCTGATGCGCAATGGAGC
GGATTACTCAGTGTTCATTAATACTGCCTCGGAGTTTGACGGCAGCGATA
GCGGCGCTCGACCGGATGAGGCTATATCGTGGGGCAAGATCAGGAAGGAT
GCCACCCCTGTTAAGGTGTATGCCGAGGCTAGCTTGGTCTTTCCGTTGAT
TGTGGGTGAAACATTCGCCAAGCGGCATCACTGCGCCGGCAAAGAGCTGC
CCCGAGAGACTAACCAAGTGTAAAAGCTTTCTAGACCAT
BS18082.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8005-RA | 1107 | CG8005-PA | 1..1107 | 17..1123 | 5535 | 100 | Plus |
| CG8005-RB | 231 | CG8005-PB | 1..231 | 17..258 | 1010 | 95.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8005-RA | 1227 | CG8005-RA | 86..1193 | 17..1124 | 5540 | 100 | Plus |
| CG8005-RB | 1216 | CG8005-RB | 86..1182 | 17..1124 | 5340 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8198541..8199457 | 208..1124 | 4585 | 100 | Plus |
| 3L | 28110227 | 3L | 8198292..8198483 | 17..208 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:35:59 has no hits.
BS18082.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:06 Download gff for
BS18082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8005-RA | 1..1107 | 17..1123 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:45 Download gff for
BS18082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8005-RA | 84..1188 | 17..1121 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:19 Download gff for
BS18082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8005-RA | 86..1190 | 17..1121 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:06 Download gff for
BS18082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8005-RA | 84..1191 | 17..1124 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:25 Download gff for
BS18082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8005-RA | 86..1190 | 17..1121 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:25 Download gff for
BS18082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8198292..8198483 | 17..208 | 100 | -> | Plus |
| 3L | 8198542..8199454 | 209..1121 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:19 Download gff for
BS18082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8191392..8191583 | 17..208 | 100 | -> | Plus |
| arm_3L | 8191642..8192554 | 209..1121 | 100 | | Plus |
BS18082.3prime Sequence
811 bp (799 high quality bases) assembled on 2007-06-06
> BS18082.3prime
ATGGTCTAGAAAGCTTTTACACTTGGTTAGTCTCTCGGGGCAGCTCTTTG
CCGGCGCAGTGATGCCGCTTGGCGAATGTTTCACCCACAATCAACGGAAA
GACCAAGCTAGCCTCGGCATACACCTTAACAGGGGTGGCATCCTTCCTGA
TCTTGCCCCACGATATAGCCTCATCCGGTCGAGCGCCGCTATCGCTGCCG
TCAAACTCCGAGGCAGTATTAATGAACACTGAGTAATCCGCTCCATTGCG
CATCAGATTGGCATTACAAATGTGATGCTTGATAACGCCGCCGCCCACGA
TGATCATCCCGCTGTTGACCGCCTTGACAGCCATGGTGTTGAGCCTCCGC
AGATCGGACAGAATGTCCACCACGAGTCCAGGTTGTCGAAAGGAGTGAAA
GTACATCATGTCGCCCAGACTGCCATCCGTCAAGGCGGGACAAAAGACTG
GTATTTGATTCTTGGCAGCCCAATAGTAAATGGAACTAGGATCGCCAATC
CGTTCGCCCAACCGATGAATAATCTTCGACGGCGACCAGATAGTTCCCTG
GGATTTTTGCTCCTCCAGCATCTCGTCCAGCAGCGGCATCACCCAGTCCT
CGAACTTACAGTAATTATCGTTCGGCACCAGAAGGTTGCCAATTCTGTTG
ATTCCACGCTCGCGGAGATCCCTGCCACTCAGCTCAAATGAACCCATGAA
CGTGGGAGCCAAGCACTTGATGAAGTCCTCCTCGACGCCGCCAGCTGTGG
TCACAATGCAGTCGATCATACGGTGCTCGGCCAGAAAGCGAATGGTCTCT
CGCAGTCCGGA
BS18082.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8005-PA | 1107 | CG8005-RA | 313..1107 | 811..17 | 3975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:47:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8005-RB | 1216 | CG8005-RB | 387..1182 | 811..16 | 3980 | 100 | Minus |
| CG8005-RA | 1227 | CG8005-RA | 398..1193 | 811..16 | 3980 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8198662..8199457 | 811..16 | 3980 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 12:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 608..663 | 285..340 | 109 | 66.1 | Plus |
BS18082.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:43 Download gff for
BS18082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8005-PA | 314..1107 | 17..810 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:03:10 Download gff for
BS18082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8005-RA | 399..1193 | 16..810 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:27:04 Download gff for
BS18082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8005-RA | 399..1193 | 16..810 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:27:04 Download gff for
BS18082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8198663..8199457 | 16..810 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:03:10 Download gff for
BS18082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8191763..8192557 | 16..810 | 100 | | Minus |
BS18082.5prime Sequence
882 bp (813 high quality bases) assembled on 2007-06-06
> BS18082.5prime
GAAGTTATCAGTCGACATGTCGACGGAGCCATCGGTGGCCAAGGATGCTG
TGCTGAAGCGCAGCGAGGCTCTGGCGGAAAACACGCCCCAAGTTAGTGGC
TACGATTTCAACGAAGGCTTAGACTACAGTAAGCTCTTCGAATCCTATGT
GAACACCGGGTTTCAGGCCACGAATCTTGGCCTGGCCATTCGGGAAATTA
ACAGAATGCTGGATTGCAGGGACCAGCCATTGGAAGCGGACCAAATAGAC
AGCCATGAAACAGACGACTTCATCCGTCGAAGAAGCAAGTGCACCGTATT
TTTGGGCTACACATCCAACTTGGTTTCGTCCGGACTGCGAGAGACCATTC
GCTTTCTGGCCGAGCACCGTATGATCGACTGCATTGTGACCACAGCTGGC
GGCGTCGAGGAGGACTTCATCAAGTGCTTGGCTCCCACGTTCATGGGTTC
ATTTGAGCTGAGTGGCAGGGATCTCCGCGAGCGTGGAATCAACAGAATTG
GCAACCTTCTGGTGCCGAACGATAATTACTGTAAGTTCGAGGACTGGGTG
ATGCCGCTGCTGGACGAGATGCTGGAGGAGCAAAAATCCCAGGGAACTAT
CTGGTCGCCGTCGAAGATTATTCATCGGTTGGGCGAACGGATTGGCGATC
CTAGTTCCATTTACTATTGGGCTGCCAAGAATCAAATACCAGTCTTTTGT
CCCGCCTTGACGGATGGCAGTCTGGGCGACATGATGTACTTTCACTCCTT
TCGACAACCTGGACTCGTGGTGGACATTCTGTCCGATCTGCGGAGGCTCA
ACACCATGGCTGTCAAGGCGGTCAACAGCGGGATGATCATCGTGGGCGGC
GGCGTTATCAAGCATCACATTTTGTATGCCAA
BS18082.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8005-PA | 1107 | CG8005-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:51:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8005-RA | 1227 | CG8005-RA | 86..951 | 17..882 | 4285 | 99.8 | Plus |
| CG8005-RB | 1216 | CG8005-RB | 86..940 | 17..882 | 4110 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8198541..8199215 | 208..882 | 3330 | 99.6 | Plus |
| 3L | 28110227 | 3L | 8198292..8198483 | 17..208 | 960 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 23:51:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 608..663 | 855..800 | 109 | 66.1 | Minus |
BS18082.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:48 Download gff for
BS18082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8005-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:22:23 Download gff for
BS18082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8005-RA | 86..949 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:24:47 Download gff for
BS18082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8005-RA | 86..949 | 17..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:24:47 Download gff for
BS18082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8198292..8198483 | 17..208 | 100 | -> | Plus |
| 3L | 8198542..8199213 | 209..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:22:23 Download gff for
BS18082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8191392..8191583 | 17..208 | 100 | -> | Plus |
| arm_3L | 8191642..8192313 | 209..880 | 99 | | Plus |
BS18082.pep Sequence
Translation from 16 to 1122
> BS18082.pep
MSTEPSVAKDAVLKRSEALAENTPQVSGYDFNEGLDYSKLFESYVNTGFQ
ATNLGLAIREINRMLDCRDQPLEADQIDSHETDDFIRRRSKCTVFLGYTS
NLVSSGLRETIRFLAEHRMIDCIVTTAGGVEEDFIKCLAPTFMGSFELSG
RDLRERGINRIGNLLVPNDNYCKFEDWVMPLLDEMLEEQKSQGTIWSPSK
IIHRLGERIGDPSSIYYWAAKNQIPVFCPALTDGSLGDMMYFHSFRQPGL
VVDILSDLRRLNTMAVKAVNSGMIIVGGGVIKHHICNANLMRNGADYSVF
INTASEFDGSDSGARPDEAISWGKIRKDATPVKVYAEASLVFPLIVGETF
AKRHHCAGKELPRETNQV*
BS18082.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8005-PA | 368 | CG8005-PA | 1..368 | 1..368 | 1926 | 100 | Plus |
| CG8005-PB | 76 | CG8005-PB | 1..64 | 1..64 | 321 | 100 | Plus |
