Clone BS18084 Report

Search the DGRC for BS18084

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptZip102B-RE
Protein status:BS18084.pep: gold
Sequenced Size:962

Clone Sequence Records

BS18084.3prime Sequence

752 bp (714 high quality bases) assembled on 2007-06-06

> BS18084.3prime
ATGGTCTAGAAAGCTTCTACCGATTATGTCCAAATGTTATAATTAGGGGT
AGCAGTGCGCCGCAAATCAGAATTACCAATTCACTATATTTTAGTGCTTG
AATACTATTGCTTCCATTTATATCATTCGTAGCAACACCTCGAGATTCCT
CTAGCAAACAATAATCATGCTGATCGCTTTTCGTAAATCCCCCTTGGGTA
AGCTCTGGTAAAACATGCACAGTTGCTACGTACAAAAATGTTCCAGCGGA
GAATAGCATAGCTATACCAGTGGCATTCACGGAATTTAACGTGTCCTTCT
GCTCCTGTCCGATCCCAAAATACGTTAAAATAGTCATAAGGGGAGCCGAC
AGGGAAAATAAGACTAGGTGTCTGCGAATTTGATGTCTGTCTACTTTTTC
GTGCAGTAAGAATGTCACTAATCCAAATGCTGCTGGTGCCTTATGAAGCA
TTATAGCTAAAAATACAATTATCTCAACGTCTTGATGGCTAGTGGTGGCA
GCTGCTCCCAATGCAACTCCATCAGCTGCGGCATGCACAACCAATCCAAG
AGTTAGTGTGGCATTGTTTTTTTTATTACTTCCAACATTACTCTTCCGCT
GAGAGATGTCCACCAACATCATGAAGACAAATCCAAGCACAAGAGAAAGT
CCAATGGTCTGTGAGTAATCTGGTTGCTCCGGAACTGATGTCCGTTTTTG
GGATTGCCCACTCCCCACCTACAATGATCGAATGCCCTCCGGATAATAAC
AA

BS18084.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG2177-PA 930 CG2177-RA 204..925 743..22 3560 99.7 Minus
CG2177-PB 606 CG2177-RB 1..601 622..22 3005 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
Zip102B-RD 2723 CG2177-RD 127..858 752..22 3605 99.6 Minus
Zip102B-RF 2995 CG2177-RF 399..1130 752..22 3605 99.6 Minus
Zip102B-RE 2821 CG2177-RE 225..956 752..22 3605 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 312795..313302 22..529 2540 100 Plus
4 1348131 4 313357..313574 526..743 1060 99.1 Plus
Blast to na_te.dros performed on 2015-02-10 22:39:11 has no hits.

BS18084.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:52 Download gff for BS18084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2177-PA 196..930 17..750 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:54 Download gff for BS18084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2177-RE 227..961 17..750 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:05 Download gff for BS18084.3prime
Subject Subject Range Query Range Percent Splice Strand
Zip102B-RE 227..961 17..750 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:05 Download gff for BS18084.3prime
Subject Subject Range Query Range Percent Splice Strand
4 312790..313298 17..525 99 <- Plus
4 313357..313582 526..750 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:54 Download gff for BS18084.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 333416..333924 17..525 99 <- Plus
arm_4 333983..334208 526..750 98   Plus

BS18084.5prime Sequence

856 bp (755 high quality bases) assembled on 2007-06-06

> BS18084.5prime
GAAGTTATCAGTCGACATGGTATTATGCTCATTAAAATTAAGTTGGGCAA
TCATGGCTGAGGAGACAATAATTCTCATTTTATTAGTGTTGGTTATGCTT
GTGGGGTCTTATTTGGCAGGGAGCATACCGATGCTGATGAAATTAAGCGA
GGAAAAGCTAAAATGTGTCACTGTGCTGGGAGCTGGATTGTTAGTGGGAA
CTGCTCTCGTTGTTATTATTCCGGAGGGCATTCGATCATTGTATGTGGGG
AGTGGCCAATCCCAAAAACGGACATCAGTTCCGGAGCAACCAGATTACTC
ACAGACCATTGGACTTTCTCTTGTGCTTGGATTTGTCTTCATGATGTTGG
TGGACATCTCTCAGCGGAAGAGTAATGTTGGAAGTAATAAAAAAAACAAT
GCCACACTAACTCTTGGATTGGTTGTGCATGCCGCAGCTGATGGAGTTGC
ATTGGGAGCAGCTGCCACCACTAGCCATCAAGACGTTGAGATAATTGTAT
TTTTAGCTATAATGCTTCATAAGGCACCAGCAGCATTTGGATTAGTGACA
TTCTTACTGCACGAAAAAGTAGACAGACATCAAATTCGCAGACACCTAGT
CTTATTTTCCCTGTCGGCTCCCCTTATGACTATTTTAACGTATTTTGGGA
TCGGACAGGAGCAGAAGGACACGTTAAATTCCGTGAATGCCACTGGTATA
GCTATGCTATTCTCCGCTGGAACATTTTTGTACGTAGCAACTGTGCATGT
TTTACCAGAGCTTACCCAAGGGGGATTTACGAAAAGCGATCAGCATGATT
ATTGTTTGCTAGAGGAATCTCGAGGTGTTGCTACGAATGATATAAATTGG
AGCAAT

BS18084.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2177-PA 930 CG2177-RA 1..831 17..847 4155 100 Plus
CG2177-PB 606 CG2177-RB 1..507 341..847 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
Zip102B-RF 2995 CG2177-RF 206..1045 17..856 4170 99.8 Plus
Zip102B-RE 2821 CG2177-RE 32..871 17..856 4170 99.8 Plus
Zip102B-RB 2870 CG2177-RB 213..920 149..856 3510 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 312880..313302 856..434 2085 99.5 Minus
4 1348131 4 313357..313644 437..150 1440 100 Minus
4 1348131 4 313747..313882 152..17 680 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:47:05 has no hits.

BS18084.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:57 Download gff for BS18084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2177-PA 1..840 17..856 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:03:12 Download gff for BS18084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2177-RE 32..871 17..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:27:18 Download gff for BS18084.5prime
Subject Subject Range Query Range Percent Splice Strand
Zip102B-RE 32..871 17..856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:27:18 Download gff for BS18084.5prime
Subject Subject Range Query Range Percent Splice Strand
4 312880..313298 438..856 99 <- Minus
4 313357..313642 152..437 100 <- Minus
4 313748..313882 17..151 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:03:12 Download gff for BS18084.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 333506..333924 438..856 99 <- Minus
arm_4 333983..334268 152..437 100 <- Minus
arm_4 334374..334508 17..151 100   Minus

BS18084.complete Sequence

962 bp assembled on 2009-08-24

GenBank Submission: KX804246

> BS18084.complete
GAAGTTATCAGTCGACATGGTATTATGCTCATTAAAATTAAGTTGGGCAA
TCATGGCTGAGGAGACAATAATTCTCATTTTATTAGTGTTGGTTATGCTT
GTGGGGTCTTATTTGGCAGGGAGCATACCGATGCTGATGAAATTAAGCGA
GGAAAAGCTAAAATGTGTCACTGTGCTGGGAGCTGGATTGTTAGTGGGAA
CTGCTCTCGTTGTTATTATTCCGGAGGGCATTCGATCATTGTATGTGGGG
AGTGGCCAATCCCAAAAACGGACATCAGTTCCGGAGCAACCAGATTACTC
ACAGACCATTGGACTTTCTCTTGTGCTTGGATTTGTCTTCATGATGTTGG
TGGACATCTCTCAGCGGAAGAGTAATGTTGGAAGTAATAAAAAAAACAAT
GCCACACTAACTCTTGGATTGGTTGTGCATGCCGCAGCTGATGGAGTTGC
ATTGGGAGCAGCTGCCACCACTAGCCATCAAGACGTTGAGATAATTGTAT
TTTTAGCTATAATGCTTCATAAGGCACCAGCAGCATTTGGATTAGTGACA
TTCTTACTGCACGAAAAAGTAGACAGACATCAAATTCGCAGACACCTAGT
CTTATTTTCCCTGTCGGCTCCCCTTATGACTATTTTAACGTATTTTGGGA
TCGGACAGGAGCAGAAGGACACGTTAAATTCCGTGAATGCCACTGGTATA
GCTATGCTATTCTCCGCTGGAACATTTTTGTACGTAGCAACTGTGCATGT
TTTACCAGAGCTTACCCAAGGGGGATTTACGAAAAGCGATCAGCATGATT
ATTGTTTGCTAGAGGAATCTCGAGGTGTTGCTACGAATGATATAAATGGA
AGCAATAGTATTCAAGCACTAAAATATAGTGAATTGGTAATTCTGATTTG
CGGCGCACTGCTACCCCTAATTATAACATTTGGACATAATCACTAGAAGC
TTTCTAGACCAT

BS18084.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
Zip102B-RF 894 CG2177-PF 1..894 53..946 4470 100 Plus
Zip102B-RE 894 CG2177-PE 1..894 53..946 4470 100 Plus
Zip102B-RD 606 CG2177-PD 1..606 341..946 3030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Zip102B-RF 2995 CG2177-RF 206..1135 17..946 4650 100 Plus
Zip102B-RE 2821 CG2177-RE 32..961 17..946 4650 100 Plus
Zip102B-RB 2870 CG2177-RB 213..1010 149..946 3990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 312790..313302 946..434 2565 100 Minus
4 1348131 4 313357..313644 437..150 1440 100 Minus
4 1348131 4 313747..313882 152..17 680 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:32:26 has no hits.

BS18084.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:47 Download gff for BS18084.complete
Subject Subject Range Query Range Percent Splice Strand
CG2177-RA 27..956 17..946 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:33 Download gff for BS18084.complete
Subject Subject Range Query Range Percent Splice Strand
CG2177-RE 32..961 17..946 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:01 Download gff for BS18084.complete
Subject Subject Range Query Range Percent Splice Strand
Zip102B-RE 32..961 17..946 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:01 Download gff for BS18084.complete
Subject Subject Range Query Range Percent Splice Strand
4 313748..313882 17..151 100   Minus
4 312790..313298 438..946 100 <- Minus
4 313357..313642 152..437 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:33 Download gff for BS18084.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 333416..333924 438..946 100 <- Minus
arm_4 333983..334268 152..437 100 <- Minus
arm_4 334374..334508 17..151 100   Minus

BS18084.pep Sequence

Translation from 16 to 945

> BS18084.pep
MVLCSLKLSWAIMAEETIILILLVLVMLVGSYLAGSIPMLMKLSEEKLKC
VTVLGAGLLVGTALVVIIPEGIRSLYVGSGQSQKRTSVPEQPDYSQTIGL
SLVLGFVFMMLVDISQRKSNVGSNKKNNATLTLGLVVHAAADGVALGAAA
TTSHQDVEIIVFLAIMLHKAPAAFGLVTFLLHEKVDRHQIRRHLVLFSLS
APLMTILTYFGIGQEQKDTLNSVNATGIAMLFSAGTFLYVATVHVLPELT
QGGFTKSDQHDYCLLEESRGVATNDINGSNSIQALKYSELVILICGALLP
LIITFGHNH*

BS18084.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
Zip102B-PF 297 CG2177-PF 1..297 13..309 1471 100 Plus
Zip102B-PE 297 CG2177-PE 1..297 13..309 1471 100 Plus
Zip102B-PD 201 CG2177-PD 1..201 109..309 1010 100 Plus
Zip102B-PB 201 CG2177-PB 1..201 109..309 1010 100 Plus