Clone Sequence Records
BS18084.3prime Sequence
752 bp (714 high quality bases) assembled on 2007-06-06
> BS18084.3prime
ATGGTCTAGAAAGCTTCTACCGATTATGTCCAAATGTTATAATTAGGGGT
AGCAGTGCGCCGCAAATCAGAATTACCAATTCACTATATTTTAGTGCTTG
AATACTATTGCTTCCATTTATATCATTCGTAGCAACACCTCGAGATTCCT
CTAGCAAACAATAATCATGCTGATCGCTTTTCGTAAATCCCCCTTGGGTA
AGCTCTGGTAAAACATGCACAGTTGCTACGTACAAAAATGTTCCAGCGGA
GAATAGCATAGCTATACCAGTGGCATTCACGGAATTTAACGTGTCCTTCT
GCTCCTGTCCGATCCCAAAATACGTTAAAATAGTCATAAGGGGAGCCGAC
AGGGAAAATAAGACTAGGTGTCTGCGAATTTGATGTCTGTCTACTTTTTC
GTGCAGTAAGAATGTCACTAATCCAAATGCTGCTGGTGCCTTATGAAGCA
TTATAGCTAAAAATACAATTATCTCAACGTCTTGATGGCTAGTGGTGGCA
GCTGCTCCCAATGCAACTCCATCAGCTGCGGCATGCACAACCAATCCAAG
AGTTAGTGTGGCATTGTTTTTTTTATTACTTCCAACATTACTCTTCCGCT
GAGAGATGTCCACCAACATCATGAAGACAAATCCAAGCACAAGAGAAAGT
CCAATGGTCTGTGAGTAATCTGGTTGCTCCGGAACTGATGTCCGTTTTTG
GGATTGCCCACTCCCCACCTACAATGATCGAATGCCCTCCGGATAATAAC
AA
BS18084.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2177-PA | 930 | CG2177-RA | 204..925 | 743..22 | 3560 | 99.7 | Minus |
CG2177-PB | 606 | CG2177-RB | 1..601 | 622..22 | 3005 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zip102B-RD | 2723 | CG2177-RD | 127..858 | 752..22 | 3605 | 99.6 | Minus |
Zip102B-RF | 2995 | CG2177-RF | 399..1130 | 752..22 | 3605 | 99.6 | Minus |
Zip102B-RE | 2821 | CG2177-RE | 225..956 | 752..22 | 3605 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:39:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 312795..313302 | 22..529 | 2540 | 100 | Plus |
4 | 1348131 | 4 | 313357..313574 | 526..743 | 1060 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:39:11 has no hits.
BS18084.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:52 Download gff for
BS18084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2177-PA | 196..930 | 17..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:54 Download gff for
BS18084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2177-RE | 227..961 | 17..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:05 Download gff for
BS18084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zip102B-RE | 227..961 | 17..750 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:05 Download gff for
BS18084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 312790..313298 | 17..525 | 99 | <- | Plus |
4 | 313357..313582 | 526..750 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:54 Download gff for
BS18084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 333416..333924 | 17..525 | 99 | <- | Plus |
arm_4 | 333983..334208 | 526..750 | 98 | | Plus |
BS18084.5prime Sequence
856 bp (755 high quality bases) assembled on 2007-06-06
> BS18084.5prime
GAAGTTATCAGTCGACATGGTATTATGCTCATTAAAATTAAGTTGGGCAA
TCATGGCTGAGGAGACAATAATTCTCATTTTATTAGTGTTGGTTATGCTT
GTGGGGTCTTATTTGGCAGGGAGCATACCGATGCTGATGAAATTAAGCGA
GGAAAAGCTAAAATGTGTCACTGTGCTGGGAGCTGGATTGTTAGTGGGAA
CTGCTCTCGTTGTTATTATTCCGGAGGGCATTCGATCATTGTATGTGGGG
AGTGGCCAATCCCAAAAACGGACATCAGTTCCGGAGCAACCAGATTACTC
ACAGACCATTGGACTTTCTCTTGTGCTTGGATTTGTCTTCATGATGTTGG
TGGACATCTCTCAGCGGAAGAGTAATGTTGGAAGTAATAAAAAAAACAAT
GCCACACTAACTCTTGGATTGGTTGTGCATGCCGCAGCTGATGGAGTTGC
ATTGGGAGCAGCTGCCACCACTAGCCATCAAGACGTTGAGATAATTGTAT
TTTTAGCTATAATGCTTCATAAGGCACCAGCAGCATTTGGATTAGTGACA
TTCTTACTGCACGAAAAAGTAGACAGACATCAAATTCGCAGACACCTAGT
CTTATTTTCCCTGTCGGCTCCCCTTATGACTATTTTAACGTATTTTGGGA
TCGGACAGGAGCAGAAGGACACGTTAAATTCCGTGAATGCCACTGGTATA
GCTATGCTATTCTCCGCTGGAACATTTTTGTACGTAGCAACTGTGCATGT
TTTACCAGAGCTTACCCAAGGGGGATTTACGAAAAGCGATCAGCATGATT
ATTGTTTGCTAGAGGAATCTCGAGGTGTTGCTACGAATGATATAAATTGG
AGCAAT
BS18084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2177-PA | 930 | CG2177-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
CG2177-PB | 606 | CG2177-RB | 1..507 | 341..847 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:47:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zip102B-RF | 2995 | CG2177-RF | 206..1045 | 17..856 | 4170 | 99.8 | Plus |
Zip102B-RE | 2821 | CG2177-RE | 32..871 | 17..856 | 4170 | 99.8 | Plus |
Zip102B-RB | 2870 | CG2177-RB | 213..920 | 149..856 | 3510 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 312880..313302 | 856..434 | 2085 | 99.5 | Minus |
4 | 1348131 | 4 | 313357..313644 | 437..150 | 1440 | 100 | Minus |
4 | 1348131 | 4 | 313747..313882 | 152..17 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:47:05 has no hits.
BS18084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:07:57 Download gff for
BS18084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2177-PA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:03:12 Download gff for
BS18084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2177-RE | 32..871 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:27:18 Download gff for
BS18084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zip102B-RE | 32..871 | 17..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:27:18 Download gff for
BS18084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 312880..313298 | 438..856 | 99 | <- | Minus |
4 | 313357..313642 | 152..437 | 100 | <- | Minus |
4 | 313748..313882 | 17..151 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:03:12 Download gff for
BS18084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 333506..333924 | 438..856 | 99 | <- | Minus |
arm_4 | 333983..334268 | 152..437 | 100 | <- | Minus |
arm_4 | 334374..334508 | 17..151 | 100 | | Minus |
BS18084.complete Sequence
962 bp assembled on 2009-08-24
GenBank Submission: KX804246
> BS18084.complete
GAAGTTATCAGTCGACATGGTATTATGCTCATTAAAATTAAGTTGGGCAA
TCATGGCTGAGGAGACAATAATTCTCATTTTATTAGTGTTGGTTATGCTT
GTGGGGTCTTATTTGGCAGGGAGCATACCGATGCTGATGAAATTAAGCGA
GGAAAAGCTAAAATGTGTCACTGTGCTGGGAGCTGGATTGTTAGTGGGAA
CTGCTCTCGTTGTTATTATTCCGGAGGGCATTCGATCATTGTATGTGGGG
AGTGGCCAATCCCAAAAACGGACATCAGTTCCGGAGCAACCAGATTACTC
ACAGACCATTGGACTTTCTCTTGTGCTTGGATTTGTCTTCATGATGTTGG
TGGACATCTCTCAGCGGAAGAGTAATGTTGGAAGTAATAAAAAAAACAAT
GCCACACTAACTCTTGGATTGGTTGTGCATGCCGCAGCTGATGGAGTTGC
ATTGGGAGCAGCTGCCACCACTAGCCATCAAGACGTTGAGATAATTGTAT
TTTTAGCTATAATGCTTCATAAGGCACCAGCAGCATTTGGATTAGTGACA
TTCTTACTGCACGAAAAAGTAGACAGACATCAAATTCGCAGACACCTAGT
CTTATTTTCCCTGTCGGCTCCCCTTATGACTATTTTAACGTATTTTGGGA
TCGGACAGGAGCAGAAGGACACGTTAAATTCCGTGAATGCCACTGGTATA
GCTATGCTATTCTCCGCTGGAACATTTTTGTACGTAGCAACTGTGCATGT
TTTACCAGAGCTTACCCAAGGGGGATTTACGAAAAGCGATCAGCATGATT
ATTGTTTGCTAGAGGAATCTCGAGGTGTTGCTACGAATGATATAAATGGA
AGCAATAGTATTCAAGCACTAAAATATAGTGAATTGGTAATTCTGATTTG
CGGCGCACTGCTACCCCTAATTATAACATTTGGACATAATCACTAGAAGC
TTTCTAGACCAT
BS18084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:32:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zip102B-RF | 894 | CG2177-PF | 1..894 | 53..946 | 4470 | 100 | Plus |
Zip102B-RE | 894 | CG2177-PE | 1..894 | 53..946 | 4470 | 100 | Plus |
Zip102B-RD | 606 | CG2177-PD | 1..606 | 341..946 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zip102B-RF | 2995 | CG2177-RF | 206..1135 | 17..946 | 4650 | 100 | Plus |
Zip102B-RE | 2821 | CG2177-RE | 32..961 | 17..946 | 4650 | 100 | Plus |
Zip102B-RB | 2870 | CG2177-RB | 213..1010 | 149..946 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 312790..313302 | 946..434 | 2565 | 100 | Minus |
4 | 1348131 | 4 | 313357..313644 | 437..150 | 1440 | 100 | Minus |
4 | 1348131 | 4 | 313747..313882 | 152..17 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:32:26 has no hits.
BS18084.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:47 Download gff for
BS18084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2177-RA | 27..956 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:33 Download gff for
BS18084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2177-RE | 32..961 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:01 Download gff for
BS18084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zip102B-RE | 32..961 | 17..946 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:01 Download gff for
BS18084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 313748..313882 | 17..151 | 100 | | Minus |
4 | 312790..313298 | 438..946 | 100 | <- | Minus |
4 | 313357..313642 | 152..437 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:33 Download gff for
BS18084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 333416..333924 | 438..946 | 100 | <- | Minus |
arm_4 | 333983..334268 | 152..437 | 100 | <- | Minus |
arm_4 | 334374..334508 | 17..151 | 100 | | Minus |
BS18084.pep Sequence
Translation from 16 to 945
> BS18084.pep
MVLCSLKLSWAIMAEETIILILLVLVMLVGSYLAGSIPMLMKLSEEKLKC
VTVLGAGLLVGTALVVIIPEGIRSLYVGSGQSQKRTSVPEQPDYSQTIGL
SLVLGFVFMMLVDISQRKSNVGSNKKNNATLTLGLVVHAAADGVALGAAA
TTSHQDVEIIVFLAIMLHKAPAAFGLVTFLLHEKVDRHQIRRHLVLFSLS
APLMTILTYFGIGQEQKDTLNSVNATGIAMLFSAGTFLYVATVHVLPELT
QGGFTKSDQHDYCLLEESRGVATNDINGSNSIQALKYSELVILICGALLP
LIITFGHNH*
BS18084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:45:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zip102B-PF | 297 | CG2177-PF | 1..297 | 13..309 | 1471 | 100 | Plus |
Zip102B-PE | 297 | CG2177-PE | 1..297 | 13..309 | 1471 | 100 | Plus |
Zip102B-PD | 201 | CG2177-PD | 1..201 | 109..309 | 1010 | 100 | Plus |
Zip102B-PB | 201 | CG2177-PB | 1..201 | 109..309 | 1010 | 100 | Plus |