Clone BS18085 Report

Search the DGRC for BS18085

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG10131-RA
Protein status:BS18085.pep: full length peptide match
Sequenced Size:980

Clone Sequence Records

BS18085.complete Sequence

980 bp assembled on 2010-02-09

GenBank Submission: KX804523

> BS18085.complete
GAAGTTATCAGTCGACATGAGCAGCCAAAAGATTGGGATCGTGGGCAGTG
GACTGATCGGCAGGGCGTGGGCGATGCTCTTTGCAGCAGCTGGCTATCGT
GTCCAACTGTATGACATCCTGGAGAGCCAGTTGGCCACTGCGCTGCAGGA
GCTGGACAAGGATTTGCATCGGCTGGAGGAGCAGAGCGCGTTGCGTGGCA
ATATACGGGCCTCGGAACAGTTTGCCCTGATCGGGGTCACCACTCGACTA
GAGGAACTCACCAGGGAGGCGGTGCACATACAGGAGTGTGTTCCCGAAGT
TTTGCATCTGAAGAAGAGTCTGTACTCGCAGTTGGATGAGCTGCTCGAGG
AGCAGACAGTGGTGGCCAGTTCCACGAGCACCTTTATGCCATCGCTGTAC
AGCGAGGGTCTGCAAAAGAGACAACAGATGCTAGTGGCTCATCCACTGAA
CCCGCCGTATTTTATACCCCTGGTAGAGATTGTCCCAGCTCCCTGGACAT
CCCCGAGTGCGGTGGAGCGAACCCGTGACCTAATGCTCAGCCTGGGCCAA
CGTCCGGTAACTTTAAAAAGAGAGATTCAGGGCTTCGCCACCAATCGGAT
TCAGTATGCCATTCTGAACGAGGTGTGGCGCCTGGTGGGCTCCGGTATCC
TCAGCGTGGCCGATGTGGATCGAGTTCTCAGCCAGGGCTTGGGATTGCGA
TATGCCCTGCTAGGATCCCTGGAGACAGCCCATCTGAATGCGCCTGGTGG
TGTGGCTGACTACTTCCAGCGTTTTGGTGGGGAAATCTCTGCGGTGAGTG
CCACCTATGGAGAGACCCCGAATACCCAGGAGGATCGGGAAACGCTGGCC
GAGATTGCACGGCAGTGTGAGCAGCTGGTGTCACTGGAAAAACTCGACGA
GAGGCGGGCCGTTCGTGATGAATTCCTCATCCAACTGGCCAAACTGAAGA
AGCAGTTTGAATAGAAGCTTTCTAGACCAT

BS18085.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG10131-RA 948 CG10131-PA 1..948 17..964 4740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10131-RA 1058 CG10131-RA 7..959 12..964 4750 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14630383..14630924 423..964 2710 100 Plus
2R 25286936 2R 14629916..14630331 12..427 2065 99.8 Plus
Blast to na_te.dros performed on 2014-11-27 13:03:08 has no hits.

BS18085.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:55 Download gff for BS18085.complete
Subject Subject Range Query Range Percent Splice Strand
CG10131-RA 9..956 17..964 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:27 Download gff for BS18085.complete
Subject Subject Range Query Range Percent Splice Strand
CG10131-RA 12..959 17..964 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:21 Download gff for BS18085.complete
Subject Subject Range Query Range Percent Splice Strand
CG10131-RA 9..956 17..964 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:58 Download gff for BS18085.complete
Subject Subject Range Query Range Percent Splice Strand
CG10131-RA 12..959 17..964 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:58 Download gff for BS18085.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14629921..14630331 17..427 100 -> Plus
2R 14630388..14630924 428..964 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:27 Download gff for BS18085.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10517426..10517836 17..427 100 -> Plus
arm_2R 10517893..10518429 428..964 100   Plus

BS18085.3prime Sequence

788 bp (782 high quality bases) assembled on 2007-06-06

> BS18085.3prime
ATGGTCTAGAAAGCTTCTATTCTAACTGCTTCTTCAGTTTGGCCAGTTGG
ATGAGGAATTCATCACGAACGGCCCGCCTCTCGTCGAGTTTTTCCAGTGA
CACCAGCTGCTCACACTGCCGTGCAATCTCGGCCAGCGTTTCCCGATCCT
CCTGGGTATTCGGGGTCTCTCCATAGGTGGCACTCACCGCAGAGATTTCC
CCACCAAAACGCTGGAAGTAGTCAGCCACACCACCAGGCGCATTCAGATG
GGCTGTCTCCAGGGATCCTAGCAGGGCATATCGCAATCCCAAGCCCTGGC
TGAGAACTCGATCCACATCGGCCACGCTGAGGATACCGGAGCCCACCAGG
CGCCACACCTCGTTCAGAATGGCATACTGAATCCGATTGGTGGCGAAGCC
CTGAATCTCTCTTTTTAAAGTTACCGGACGTTGGCCCAGGCTGAGCATTA
GGTCACGGGTTCGCTCCACCGCACTCGGGGATGTCCAGGGAGCTGGGACA
ATCTCTACCAGGGGTATAAAATACGGCGGGTTCAGTGGATGAGCCACTAG
CATCTGTTGTCTCTTTTGCAGACCCTCGCTGTACAGCGATGGCATAAAGG
TGCTCGTGGAACTGGCCACCACTGTCTGCTCCTCGAGCAGCTCATCCAAC
TGCGAGTACAGACTCTTCTTCAGATGCAAAACTTCGGGAACACACTCCTG
TATGTGCACCGCCTCCCTGGTGAGTTCCTCTAGTCGAGTGGTGACCCCGA
TCAGGGCAAACTGTTCCGAGGCCCGTATATTGCCACGC

BS18085.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10131-PA 948 CG10131-RA 177..948 788..17 3835 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10131-RA 1058 CG10131-RA 188..959 788..17 3845 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14630383..14630924 558..17 2695 99.8 Minus
2R 25286936 2R 14630097..14630331 788..554 1175 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:38:51 has no hits.

BS18085.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:02 Download gff for BS18085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10131-PA 177..948 17..788 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:53:41 Download gff for BS18085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10131-RA 188..965 11..788 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:01 Download gff for BS18085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10131-RA 188..965 11..788 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:01 Download gff for BS18085.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14630097..14630331 554..788 100 -> Minus
2R 14630388..14630930 11..553 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:53:41 Download gff for BS18085.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10517602..10517836 554..788 100 -> Minus
arm_2R 10517893..10518435 11..553 99   Minus

BS18085.5prime Sequence

848 bp (734 high quality bases) assembled on 2007-06-06

> BS18085.5prime
GAAGTTATCAGTCGACATGAGCAGCCAAAAGATTGGGATCGTGGGCAGTG
GACTGATCGGCAGGGCGTGGGCGATGCTCTTTGCAGCAGCTGGCTATCGT
GTCCAACTGTATGACATCCTGGAGAGCCAGTTGGCCACTGCGCTGCAGGA
GCTGGACAAGGATTTGCATCGGCTGGAGGAGCAGAGCGCGTTGCGTGGCA
ATATACGGGCCTCGGAACAGTTTGCCCTGATCGGGGTCACCACTCGACTA
GAGGAACTCACCAGGGAGGCGGTGCACATACAGGAGTGTGTTCCCGAAGT
TTTGCATCTGAAGAAGAGTCTGTACTCGCAGTTGGATGAGCTGCTCGAGG
AGCAGACAGTGGTGGCCAGTTCCACGAGCACCTTTATGCCATCGCTGTAC
AGCGAGGGTCTGCAAAAGAGACAACAGATGCTAGTGGCTCATCCACTGAA
CCCGCCGTATTTTATACCCCTGGTAGAGATTGTCCCAGCTCCCTGGACAT
CCCCGAGTGCGGTGGAGCGAACCCGTGACCTAATGCTCAGCCTGGGCCAA
CGTCCGGTAACTTTAAAAAGAGAGATTCAGGGCTTCGCCACCAATCGGAT
TCAGTATGCCATTCTGAACGAGGTGTGGCGCCTGGTGGGCTCCGGTATCC
TCAGCGTGGCCGATGTGGATCGAGTTCTCAGCCAGGGCTTGGGATTGCGA
TATGCCCTGCTAGGATCCCTGGAGACAGCCCATCTGAATGCGCCTGGTGG
TGTGGCTGACTACTTCCAGCGTTTTGGTGGGGAATCTCTGCGGTGAGTGC
CACCTATGGAGAGACCCCGAATACCCAGGAGGATCGGGAAACGCTGGG

BS18085.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10131-PA 948 CG10131-RA 1..768 17..784 3840 100 Plus
CG10131-PA 948 CG10131-RA 768..832 783..847 325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10131-RA 1058 CG10131-RA 7..843 12..847 4145 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14630383..14630808 423..847 2080 99.8 Plus
2R 25286936 2R 14629916..14630331 12..427 2065 99.8 Plus
Blast to na_te.dros performed on 2015-02-13 06:09:41 has no hits.

BS18085.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:07 Download gff for BS18085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10131-PA 1..832 17..848 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:12:46 Download gff for BS18085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10131-RA 2..843 7..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:10:55 Download gff for BS18085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10131-RA 2..843 7..848 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:10:55 Download gff for BS18085.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14629911..14630331 7..427 99 -> Plus
2R 14630388..14630808 428..848 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:12:46 Download gff for BS18085.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10517416..10517836 7..427 99 -> Plus
arm_2R 10517893..10518313 428..848 99   Plus

BS18085.pep Sequence

Translation from 16 to 963

> BS18085.pep
MSSQKIGIVGSGLIGRAWAMLFAAAGYRVQLYDILESQLATALQELDKDL
HRLEEQSALRGNIRASEQFALIGVTTRLEELTREAVHIQECVPEVLHLKK
SLYSQLDELLEEQTVVASSTSTFMPSLYSEGLQKRQQMLVAHPLNPPYFI
PLVEIVPAPWTSPSAVERTRDLMLSLGQRPVTLKREIQGFATNRIQYAIL
NEVWRLVGSGILSVADVDRVLSQGLGLRYALLGSLETAHLNAPGGVADYF
QRFGGEISAVSATYGETPNTQEDRETLAEIARQCEQLVSLEKLDERRAVR
DEFLIQLAKLKKQFE*

BS18085.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10131-PA 315 CG10131-PA 1..315 1..315 1570 100 Plus
CG9914-PB 315 CG9914-PB 5..312 3..313 884 55.9 Plus
CG9914-PA 315 CG9914-PA 5..312 3..313 884 55.9 Plus
Mtpalpha-PB 744 CG4389-PB 337..539 6..211 164 24.3 Plus
Mtpalpha-PA 783 CG4389-PA 376..578 6..211 164 24.3 Plus