Clone Sequence Records
BS18085.complete Sequence
980 bp assembled on 2010-02-09
GenBank Submission: KX804523
> BS18085.complete
GAAGTTATCAGTCGACATGAGCAGCCAAAAGATTGGGATCGTGGGCAGTG
GACTGATCGGCAGGGCGTGGGCGATGCTCTTTGCAGCAGCTGGCTATCGT
GTCCAACTGTATGACATCCTGGAGAGCCAGTTGGCCACTGCGCTGCAGGA
GCTGGACAAGGATTTGCATCGGCTGGAGGAGCAGAGCGCGTTGCGTGGCA
ATATACGGGCCTCGGAACAGTTTGCCCTGATCGGGGTCACCACTCGACTA
GAGGAACTCACCAGGGAGGCGGTGCACATACAGGAGTGTGTTCCCGAAGT
TTTGCATCTGAAGAAGAGTCTGTACTCGCAGTTGGATGAGCTGCTCGAGG
AGCAGACAGTGGTGGCCAGTTCCACGAGCACCTTTATGCCATCGCTGTAC
AGCGAGGGTCTGCAAAAGAGACAACAGATGCTAGTGGCTCATCCACTGAA
CCCGCCGTATTTTATACCCCTGGTAGAGATTGTCCCAGCTCCCTGGACAT
CCCCGAGTGCGGTGGAGCGAACCCGTGACCTAATGCTCAGCCTGGGCCAA
CGTCCGGTAACTTTAAAAAGAGAGATTCAGGGCTTCGCCACCAATCGGAT
TCAGTATGCCATTCTGAACGAGGTGTGGCGCCTGGTGGGCTCCGGTATCC
TCAGCGTGGCCGATGTGGATCGAGTTCTCAGCCAGGGCTTGGGATTGCGA
TATGCCCTGCTAGGATCCCTGGAGACAGCCCATCTGAATGCGCCTGGTGG
TGTGGCTGACTACTTCCAGCGTTTTGGTGGGGAAATCTCTGCGGTGAGTG
CCACCTATGGAGAGACCCCGAATACCCAGGAGGATCGGGAAACGCTGGCC
GAGATTGCACGGCAGTGTGAGCAGCTGGTGTCACTGGAAAAACTCGACGA
GAGGCGGGCCGTTCGTGATGAATTCCTCATCCAACTGGCCAAACTGAAGA
AGCAGTTTGAATAGAAGCTTTCTAGACCAT
BS18085.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:03:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10131-RA | 948 | CG10131-PA | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10131-RA | 1058 | CG10131-RA | 7..959 | 12..964 | 4750 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14630383..14630924 | 423..964 | 2710 | 100 | Plus |
2R | 25286936 | 2R | 14629916..14630331 | 12..427 | 2065 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:03:08 has no hits.
BS18085.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:55 Download gff for
BS18085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-RA | 9..956 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:27 Download gff for
BS18085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-RA | 12..959 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:21 Download gff for
BS18085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-RA | 9..956 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:58 Download gff for
BS18085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-RA | 12..959 | 17..964 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:58 Download gff for
BS18085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14629921..14630331 | 17..427 | 100 | -> | Plus |
2R | 14630388..14630924 | 428..964 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:27 Download gff for
BS18085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10517426..10517836 | 17..427 | 100 | -> | Plus |
arm_2R | 10517893..10518429 | 428..964 | 100 | | Plus |
BS18085.3prime Sequence
788 bp (782 high quality bases) assembled on 2007-06-06
> BS18085.3prime
ATGGTCTAGAAAGCTTCTATTCTAACTGCTTCTTCAGTTTGGCCAGTTGG
ATGAGGAATTCATCACGAACGGCCCGCCTCTCGTCGAGTTTTTCCAGTGA
CACCAGCTGCTCACACTGCCGTGCAATCTCGGCCAGCGTTTCCCGATCCT
CCTGGGTATTCGGGGTCTCTCCATAGGTGGCACTCACCGCAGAGATTTCC
CCACCAAAACGCTGGAAGTAGTCAGCCACACCACCAGGCGCATTCAGATG
GGCTGTCTCCAGGGATCCTAGCAGGGCATATCGCAATCCCAAGCCCTGGC
TGAGAACTCGATCCACATCGGCCACGCTGAGGATACCGGAGCCCACCAGG
CGCCACACCTCGTTCAGAATGGCATACTGAATCCGATTGGTGGCGAAGCC
CTGAATCTCTCTTTTTAAAGTTACCGGACGTTGGCCCAGGCTGAGCATTA
GGTCACGGGTTCGCTCCACCGCACTCGGGGATGTCCAGGGAGCTGGGACA
ATCTCTACCAGGGGTATAAAATACGGCGGGTTCAGTGGATGAGCCACTAG
CATCTGTTGTCTCTTTTGCAGACCCTCGCTGTACAGCGATGGCATAAAGG
TGCTCGTGGAACTGGCCACCACTGTCTGCTCCTCGAGCAGCTCATCCAAC
TGCGAGTACAGACTCTTCTTCAGATGCAAAACTTCGGGAACACACTCCTG
TATGTGCACCGCCTCCCTGGTGAGTTCCTCTAGTCGAGTGGTGACCCCGA
TCAGGGCAAACTGTTCCGAGGCCCGTATATTGCCACGC
BS18085.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10131-PA | 948 | CG10131-RA | 177..948 | 788..17 | 3835 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10131-RA | 1058 | CG10131-RA | 188..959 | 788..17 | 3845 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14630383..14630924 | 558..17 | 2695 | 99.8 | Minus |
2R | 25286936 | 2R | 14630097..14630331 | 788..554 | 1175 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:38:51 has no hits.
BS18085.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:02 Download gff for
BS18085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-PA | 177..948 | 17..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:53:41 Download gff for
BS18085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-RA | 188..965 | 11..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:01 Download gff for
BS18085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-RA | 188..965 | 11..788 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:01 Download gff for
BS18085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14630097..14630331 | 554..788 | 100 | -> | Minus |
2R | 14630388..14630930 | 11..553 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:53:41 Download gff for
BS18085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10517602..10517836 | 554..788 | 100 | -> | Minus |
arm_2R | 10517893..10518435 | 11..553 | 99 | | Minus |
BS18085.5prime Sequence
848 bp (734 high quality bases) assembled on 2007-06-06
> BS18085.5prime
GAAGTTATCAGTCGACATGAGCAGCCAAAAGATTGGGATCGTGGGCAGTG
GACTGATCGGCAGGGCGTGGGCGATGCTCTTTGCAGCAGCTGGCTATCGT
GTCCAACTGTATGACATCCTGGAGAGCCAGTTGGCCACTGCGCTGCAGGA
GCTGGACAAGGATTTGCATCGGCTGGAGGAGCAGAGCGCGTTGCGTGGCA
ATATACGGGCCTCGGAACAGTTTGCCCTGATCGGGGTCACCACTCGACTA
GAGGAACTCACCAGGGAGGCGGTGCACATACAGGAGTGTGTTCCCGAAGT
TTTGCATCTGAAGAAGAGTCTGTACTCGCAGTTGGATGAGCTGCTCGAGG
AGCAGACAGTGGTGGCCAGTTCCACGAGCACCTTTATGCCATCGCTGTAC
AGCGAGGGTCTGCAAAAGAGACAACAGATGCTAGTGGCTCATCCACTGAA
CCCGCCGTATTTTATACCCCTGGTAGAGATTGTCCCAGCTCCCTGGACAT
CCCCGAGTGCGGTGGAGCGAACCCGTGACCTAATGCTCAGCCTGGGCCAA
CGTCCGGTAACTTTAAAAAGAGAGATTCAGGGCTTCGCCACCAATCGGAT
TCAGTATGCCATTCTGAACGAGGTGTGGCGCCTGGTGGGCTCCGGTATCC
TCAGCGTGGCCGATGTGGATCGAGTTCTCAGCCAGGGCTTGGGATTGCGA
TATGCCCTGCTAGGATCCCTGGAGACAGCCCATCTGAATGCGCCTGGTGG
TGTGGCTGACTACTTCCAGCGTTTTGGTGGGGAATCTCTGCGGTGAGTGC
CACCTATGGAGAGACCCCGAATACCCAGGAGGATCGGGAAACGCTGGG
BS18085.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10131-PA | 948 | CG10131-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
CG10131-PA | 948 | CG10131-RA | 768..832 | 783..847 | 325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10131-RA | 1058 | CG10131-RA | 7..843 | 12..847 | 4145 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:09:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14630383..14630808 | 423..847 | 2080 | 99.8 | Plus |
2R | 25286936 | 2R | 14629916..14630331 | 12..427 | 2065 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:09:41 has no hits.
BS18085.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:07 Download gff for
BS18085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-PA | 1..832 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:12:46 Download gff for
BS18085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-RA | 2..843 | 7..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:10:55 Download gff for
BS18085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-RA | 2..843 | 7..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:10:55 Download gff for
BS18085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14629911..14630331 | 7..427 | 99 | -> | Plus |
2R | 14630388..14630808 | 428..848 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:12:46 Download gff for
BS18085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10517416..10517836 | 7..427 | 99 | -> | Plus |
arm_2R | 10517893..10518313 | 428..848 | 99 | | Plus |
BS18085.pep Sequence
Translation from 16 to 963
> BS18085.pep
MSSQKIGIVGSGLIGRAWAMLFAAAGYRVQLYDILESQLATALQELDKDL
HRLEEQSALRGNIRASEQFALIGVTTRLEELTREAVHIQECVPEVLHLKK
SLYSQLDELLEEQTVVASSTSTFMPSLYSEGLQKRQQMLVAHPLNPPYFI
PLVEIVPAPWTSPSAVERTRDLMLSLGQRPVTLKREIQGFATNRIQYAIL
NEVWRLVGSGILSVADVDRVLSQGLGLRYALLGSLETAHLNAPGGVADYF
QRFGGEISAVSATYGETPNTQEDRETLAEIARQCEQLVSLEKLDERRAVR
DEFLIQLAKLKKQFE*
BS18085.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10131-PA | 315 | CG10131-PA | 1..315 | 1..315 | 1570 | 100 | Plus |
CG9914-PB | 315 | CG9914-PB | 5..312 | 3..313 | 884 | 55.9 | Plus |
CG9914-PA | 315 | CG9914-PA | 5..312 | 3..313 | 884 | 55.9 | Plus |
Mtpalpha-PB | 744 | CG4389-PB | 337..539 | 6..211 | 164 | 24.3 | Plus |
Mtpalpha-PA | 783 | CG4389-PA | 376..578 | 6..211 | 164 | 24.3 | Plus |