Clone Sequence Records
BS18087.complete Sequence
1841 bp assembled on 2009-12-07
GenBank Submission: KX801157
> BS18087.complete
GAAGTTATCAGTCGACATGGCCGAGTTCATAGCTGAGATGCAGGAGCGCC
TGCTGCCGGAATACGAGCAGATGAAGAACTACAGCGTATTCACAGCGGAT
CAGGTCAGAGAAATCGTTAGCAGGCGGGAACGCTTGTTCCTTAAGATCAA
CAAGAGCCACCAGAGCATCACCGACTACCTGGACTTCATACTGTACGAGA
AGCACATGCACATGACCATCGTGGACAAGGAAAAGAAGATGCACGTTAAA
CTCACCGGTCTAAAGGCCTCCATAGCCACGCGGATCATGCGCCTGTACAG
AGAGGCCTTGGCTAAGTTTAACCACGACAGACGGCTGTGGAGCAACTGGA
TCAAGTTCAGCAGGAAGTCAAATCCTGTCGAGGTGGCGGGCATATACGAG
AAGATGCTGCTGTACCATGGCGACTCGCCGGATCTTTGGGTGGACGCCGC
CTTATGGCTGTACGAGTTCAATCGGCTCAACATCGATCGAGTCAAGGACA
TCCTGCTGCGTGGCTTGCAGAGACATCCGGATTCCGAGGCACTTAACAAG
TGCTTCTTTGACATTATGCTGAAAGAGGCTGCCCTGGCCAGCAACGAACG
CAATTTAGCCGAGAATACGCTCTCGGAACAGGACATCAAATTGGAACGCG
TGGAGGCGGTCTACCGCAACAGCATGGCCAATATTACCCAATTGGACTAC
TTTGTTAAGCTTCTAGAAAGCTGTGAGGATCATCAGGAGCTGACGGGCAA
GCTGCAGCGAATGATAATCGATGATATGCAAGAGAAGTTCCCCCGGGAGC
CGGGCCTGTGGGATTTGCTTGCCCAGCGAGAGTTGCGCGGCTTTCATCTG
GGCGACCTGGAGGAGGAGGACTTGGATACCAGTGACGAAGAGCCGGCCAG
CAAGAAATCTCGTTCCGTAAATGGCCGCTCTCTCAAGCGACGCATTCAAC
TCTGCGTTACTGTATACAAATCGGCGGTGGAGGAGCTGCAAACGACAGAA
ATGTGGAATATGTATTTGGATGCCATGCTGGCACTCAATAGCGATGGAAA
GACGGAGCGTATACTAAAGCAACAGTGCCTAGCGGATGCCTTGCAGGCGG
GCCATCGCTCTCAGTTGATGGGCGTGAAACACTATGCCACATTAAGAAAG
ATGCTCTGCACTGCTCCGAGTGGAAGGGAGGCAGCTGTCACCATACTCAC
GGAAGCCCTGAAAAACGATTCATCGGTGGAGATGCACGAGCTTCTTCTGG
CCACGCACATTCAAAGCGACAGTGAGCCCTTGATCTATGAGCTATTCAAC
AAGATCCAGAAGAGCATGGGCAGTGAGGCGTTGCCGCTGTGGCGCAGTGT
CATTCTGTATTATCGCACTCGGCAGGATAGCTTGGGCGCACGCCGGCTGG
ATGAGATCTACGGTCTCGCCTGCAAGGCTGCGTGGCCGGAATTTGGTGAG
CTGCGCTCCGATTATTTGCGCTATCTGTGGCAGGAGCGGTCTGTCGAGGA
AGCACGCAAGGAGTACGCCAAGCTGGCCATTCTACCGCCCATGTCGTTGG
CGCTGCACCGCCAAATGGTTCAGCTGGAGTCCAGTGCGGCAGCTTGTGAC
CAGGCCAGCCTGAAATACTGGCGCATGTGCTACGACTTTATGGCCTGCTA
TTTCGGCAAGACACAGCCGCGCGTTTGGGTGGAGTATCTCGCCTTCGAGC
GAGATCACGGCGAGGCGAAGAACATCTCCCTGCTCACCCAGCGGGCTCTC
AGCACCCTAGAGCCTCAATATGTCGCCGCGTTTGAGGCGGAACGGGCACT
GGCCTATGTGGGCGCATCGATATAGAAGCTTTCTAGACCAT
BS18087.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7246-RA | 1809 | CG7246-PA | 1..1809 | 17..1825 | 9045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7246-RA | 2043 | CG7246-RA | 111..1919 | 17..1825 | 9045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9079245..9080435 | 1598..408 | 5940 | 99.9 | Minus |
| X | 23542271 | X | 9080495..9080801 | 412..106 | 1535 | 100 | Minus |
| X | 23542271 | X | 9078947..9079174 | 1825..1598 | 1140 | 100 | Minus |
| X | 23542271 | X | 9080856..9080947 | 108..17 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:39:24 has no hits.
BS18087.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:52 Download gff for
BS18087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 1..1809 | 17..1825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:15 Download gff for
BS18087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 96..1904 | 17..1825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:56 Download gff for
BS18087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 111..1919 | 17..1825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:18:53 Download gff for
BS18087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 89..1904 | 10..1825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:47 Download gff for
BS18087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 111..1919 | 17..1825 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:47 Download gff for
BS18087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9078947..9079174 | 1598..1825 | 100 | <- | Minus |
| X | 9079246..9080430 | 413..1597 | 100 | <- | Minus |
| X | 9080495..9080798 | 109..412 | 100 | <- | Minus |
| X | 9080856..9080947 | 17..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:56 Download gff for
BS18087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8972980..8973207 | 1598..1825 | 100 | <- | Minus |
| arm_X | 8973279..8974463 | 413..1597 | 100 | <- | Minus |
| arm_X | 8974528..8974831 | 109..412 | 100 | <- | Minus |
| arm_X | 8974889..8974980 | 17..108 | 100 | | Minus |
BS18087.3prime Sequence
848 bp (777 high quality bases) assembled on 2007-06-06
> BS18087.3prime
ATGGTCTAGAAAGCTTCTATATCGATGCGCCCACATAGGCCAGTGCCCGT
TCCGCCTCAAACGCGGCGACATATTGAGGCTCTAGGGTGCTGAGAGCCCG
CTGGGTGAGCAGGGAGATGTTCTTCGCCTCGCCGTGATCTCGCTCGAAGG
CGAGATACTCCACCCAAACGCGCGGCTGTGTCTTGCCGAAATAGCAGGCC
ATAAAGTCGTAGCACATGCGCCAGTATTTCAGGCTGGCCTGGTCACAAGC
TGCCGCACTGGACTCCAGCTGAACCATTTGGCGGTGCAGCGCCAACGACA
TGGGCGGTAGAATGGCCAGCTTGGCGTACTCCTTGCGTGCTTCCTCGACA
GACCGCTCCTGCCACAGATAGCGCAAATAATCGGAGCGCAGCTCACCAAA
TTCCGGCCACGCAGCCTTGCAGGCGAGACCGTAGATCTCATCCAGCCGGC
GTGCGCCCAAGCTATCCTGCCGAGTGCGATAATACAGAATGACACTGCGC
CACAGCGGCAACGCCTCACTGCCCATGCTCTTCTGGATCTTGTTGAATAG
CTCATAGATCAAGGGCTCACTGTCGCTTTGAATGTGCGTGGCCAGAAGAA
GCTCGTGCATCTCCACCGATGAATCGTTTTTCAGGGCTTCCGTGAGTATG
GTGACAGCTGCCTCCCTTCCACTCGGAGCAGTGCAGAGCATCTTTCTTAA
TGTGGCATAGTGTTTCACGCCCATCAACTGAGAGCGATGGCCCGCCTGCA
AGGCATCCGCTAGGCACTGTTGCTTTAGTATACGCTCCGTCTTTCCATCG
CTATTGAGTGCCAGCATGGCATCCAATACATATTCCACATTTCTGTCG
BS18087.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7246-PA | 1809 | CG7246-RA | 1000..1809 | 826..17 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 14:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7246-RA | 2043 | CG7246-RA | 1087..1919 | 848..17 | 4140 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 14:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9079245..9079850 | 244..848 | 2980 | 99.8 | Plus |
| X | 23542271 | X | 9078947..9079174 | 17..244 | 1140 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 14:13:44 has no hits.
BS18087.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:12 Download gff for
BS18087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-PA | 977..1809 | 17..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:07 Download gff for
BS18087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 1087..1919 | 17..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:18:04 Download gff for
BS18087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 1087..1919 | 17..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:18:04 Download gff for
BS18087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9078947..9079174 | 17..244 | 100 | <- | Plus |
| X | 9079246..9079850 | 245..848 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:07 Download gff for
BS18087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8972980..8973207 | 17..244 | 100 | <- | Plus |
| arm_X | 8973279..8973883 | 245..848 | 99 | | Plus |
BS18087.5prime Sequence
857 bp (791 high quality bases) assembled on 2007-06-06
> BS18087.5prime
GAAGTTATCAGTCGACATGGCCGAGTTCATAGCTGAGATGCAGGAGCGCC
TGCTGCCGGAATACGAGCAGATGAAGAACTACAGCGTATTCACAGCGGAT
CAGGTCAGAGAAATCGTTAGCAGGCGGGAACGCTTGTTCCTTAAGATCAA
CAAGAGCCACCAGAGCATCACCGACTACCTGGACTTCATACTGTACGAGA
AGCACATGCACATGACCATCGTGGACAAGGAAAAGAAGATGCACGTTAAA
CTCACCGGTCTAAAGGCCTCCATAGCCACGCGGATCATGCGCCTGTACAG
AGAGGCCTTGGCTAAGTTTAACCACGACAGACGGCTGTGGAGCAACTGGA
TCAAGTTCAGCAGGAAGTCAAATCCTGTCGAGGTGGCGGGCATATACGAG
AAGATGCTGCTGTACCATGGCGACTCGCCGGATCTTTGGGTGGACGCCGC
CTTATGGCTGTACGAGTTCAATCGGCTCAACATCGATCGAGTCAAGGACA
TCCTGCTGCGTGGCTTGCAGAGACATCCGGATTCCGAGGCACTTAACAAG
TGCTTCTTTGACATTATGCTGAAAGAGGCTGCCCTGGCCAGCAACGAACG
CAATTTAGCCGAGAATACGCTCTCGGAACAGGACATCAAATTGGAACGCG
TGGAGGCGGTCTACCGCAACAGCATGGCCAATATTACCCAATTGGACTAC
TTTGTTAAGCTTCTAGAAAGCTGTGAGGATCATCAGGAGCTGACGGGCAA
GCTGCAGCGAATGATAATCGATGATATGCAAGAGAAGTTCCCCCGGGAGC
CGGGCCTGTGGGATTTGCTTGCCCAGCGAGAGTTGCGCGGCTTTCATCTG
GGCGACC
BS18087.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7246-PA | 1809 | CG7246-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7246-RA | 2043 | CG7246-RA | 111..951 | 17..857 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9079986..9080435 | 857..408 | 2235 | 99.8 | Minus |
| X | 23542271 | X | 9080495..9080801 | 412..106 | 1535 | 100 | Minus |
| X | 23542271 | X | 9080856..9080947 | 108..17 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:39:21 has no hits.
BS18087.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:17 Download gff for
BS18087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:56 Download gff for
BS18087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 104..951 | 10..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:34 Download gff for
BS18087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 104..951 | 10..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:34 Download gff for
BS18087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9079986..9080430 | 413..857 | 100 | <- | Minus |
| X | 9080495..9080798 | 109..412 | 100 | <- | Minus |
| X | 9080856..9080954 | 10..108 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:56 Download gff for
BS18087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8974019..8974463 | 413..857 | 100 | <- | Minus |
| arm_X | 8974528..8974831 | 109..412 | 100 | <- | Minus |
| arm_X | 8974889..8974987 | 10..108 | 96 | | Minus |
BS18087.pep Sequence
Translation from 16 to 1824
> BS18087.pep
MAEFIAEMQERLLPEYEQMKNYSVFTADQVREIVSRRERLFLKINKSHQS
ITDYLDFILYEKHMHMTIVDKEKKMHVKLTGLKASIATRIMRLYREALAK
FNHDRRLWSNWIKFSRKSNPVEVAGIYEKMLLYHGDSPDLWVDAALWLYE
FNRLNIDRVKDILLRGLQRHPDSEALNKCFFDIMLKEAALASNERNLAEN
TLSEQDIKLERVEAVYRNSMANITQLDYFVKLLESCEDHQELTGKLQRMI
IDDMQEKFPREPGLWDLLAQRELRGFHLGDLEEEDLDTSDEEPASKKSRS
VNGRSLKRRIQLCVTVYKSAVEELQTTEMWNMYLDAMLALNSDGKTERIL
KQQCLADALQAGHRSQLMGVKHYATLRKMLCTAPSGREAAVTILTEALKN
DSSVEMHELLLATHIQSDSEPLIYELFNKIQKSMGSEALPLWRSVILYYR
TRQDSLGARRLDEIYGLACKAAWPEFGELRSDYLRYLWQERSVEEARKEY
AKLAILPPMSLALHRQMVQLESSAAACDQASLKYWRMCYDFMACYFGKTQ
PRVWVEYLAFERDHGEAKNISLLTQRALSTLEPQYVAAFEAERALAYVGA
SI*
BS18087.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:20:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7246-PA | 602 | CG7246-PA | 1..602 | 1..602 | 3103 | 100 | Plus |
