Clone BS18088 Report

Search the DGRC for BS18088

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG31251-RA
Protein status:BS18088.pep: full length peptide match
Sequenced Size:953

Clone Sequence Records

BS18088.complete Sequence

953 bp assembled on 2010-02-09

GenBank Submission: KX804556

> BS18088.complete
GAAGTTATCAGTCGACATGGACTTTCAGCGAAACGATGCTATGCTCATGG
AAATTCTGCAGGATCGGAAAACTATTACAGGTTTCCTGGACTCCATTTTC
GGATTTCTGCGACGCAACACCGACTTTTATCACACAAAACGCGATGAAGC
GGATAAAATAGGCTTCCCCAAAGGCGTGAGGGATCAGATTCTATATGGCG
CCATGCAGCGCTACGATCCGGATTGCTTGCTACAATCCCTGACCGCGGAA
GGCGGTGCAGATGATGGAGAAACGGCTCCGCCTGCCGTCGAAGAAGTGGT
CCTGGAAAGCGAAGATGGTCCTCAGGACGAGGAAATGAAACCCATAGAGA
GCCAGCCGCCACAAAAAGGGAAGGAGCAGTCAAAGTTCTCCCCCAGCGAC
TACAAAAACGGAGATGTGTTCGAAACGCACTGCTGGTCACAAACCCTCAA
GGATGTGGAGGTGCAGGCTCTGCTTCCCAAGGATCATCAAACGGCGAAGA
AGCTGCACATTTCAATTCAGGCCCAGCACATCAAAGTGAGCAGCAAGCAT
AGCCCAGAGACGATCATCCTCGAGGGAAACCTGAGCCAGCGGATTAAACA
CAAGGAGGCGGTGTGGACAATTGATCAGAACCGATTGATCATAAGTTACG
ATAAAGCAAAGGAGCTCTGGTGGGATCGGCTCTTCGAAGGTGATCCAGAA
ATCGATTCCAAGAAGATTGAATGCGAACGCTATATAGATGATTTGCCGGA
GGAAACCCAGGCCACCATAGAAAAGCTTAGGGTCCAGCAGTTGGCAGCAG
ACAAGCAACAAAATGAAATTCAGACCTCAAGTCCCGACCAAGCTATAAAC
CTGGATCGCCTGAAAGCTGCCTGGGATGCCGAAGGTTCGCCGTTTAAAGG
ACAGCCCTTTGATCCTTCTATCGTAAGAATGAGTTAAAAGCTTTCTAGAC
CAT

BS18088.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31251-RA 921 CG31251-PA 1..921 17..937 4605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31251-RA 1060 CG31251-RA 71..992 17..938 4610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17684155..17684687 650..118 2665 100 Minus
3R 32079331 3R 17683808..17684096 938..650 1445 100 Minus
3R 32079331 3R 17684745..17684845 117..17 505 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:05:46 has no hits.

BS18088.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:08 Download gff for BS18088.complete
Subject Subject Range Query Range Percent Splice Strand
CG31251-RA 1..921 17..937 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:57 Download gff for BS18088.complete
Subject Subject Range Query Range Percent Splice Strand
CG31251-RA 67..985 17..935 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:06 Download gff for BS18088.complete
Subject Subject Range Query Range Percent Splice Strand
CG31251-RA 71..989 17..935 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:08 Download gff for BS18088.complete
Subject Subject Range Query Range Percent Splice Strand
CG31251-RA 67..987 17..937 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:39 Download gff for BS18088.complete
Subject Subject Range Query Range Percent Splice Strand
CG31251-RA 71..989 17..935 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:39 Download gff for BS18088.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17683811..17684095 651..935 100 <- Minus
3R 17684155..17684687 118..650 100 <- Minus
3R 17684745..17684845 17..117 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:06 Download gff for BS18088.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13509533..13509817 651..935 100 <- Minus
arm_3R 13509877..13510409 118..650 100 <- Minus
arm_3R 13510467..13510567 17..117 100   Minus

BS18088.3prime Sequence

814 bp (785 high quality bases) assembled on 2007-06-06

> BS18088.3prime
ATGGTCTAGAAAGCTTTTAACTCATTCTTACGATAGAAGGATCAAAGGGC
TGTCCTTTAAACGGCGAACCTTCGGCATCCCAGGCAGCTTTCAGGCGATC
CAGGTTTATAGCTTGGTCGGGACTTGAGGTCTGAATTTCATTTTGTTGCT
TGTCTGCTGCCAACTGCTGGACCCTAAGCTTTTCTATGGTGGCCTGGGTT
TCCTCCGGCAAATCATCTATATAGCGTTCGCATTCAATCTTCTTGGAATC
GATTTCTGGATCACCTTCGAAGAGCCGATCCCACCAGAGCTCCTTTGCTT
TATCGTAACTTATGATCAATCGGTTCTGATCAATTGTCCACACCGCCTCC
TTGTGTTTAATCCGCTGGCTCAGGTTTCCCTCGAGGATGATCGTCTCTGG
GCTATGCTTGCTGCTCACTTTGATGTGCTGGGCCTGAATTGAAATGTGCA
GCTTCTTCGCCGTTTGATGATCCTTGGGAAGCAGAGCCTGCACCTCCACA
TCCTTGAGGGTTTGTGACCAGCAGTGCGTTTCGAACACATCTCCGTTTTT
GTAGTCGCTGGGGGAGAACTTTGACTGCTCCTTCCCTTTTTGTGGCGGCT
GGCTCTCTATGGGTTTCATTTCCTCGTCCTGAGGACCATCTTCGCTTTCC
AGGACCACTTCTTCGACGGCAGGCGGAGCCGTTTCTCCATCATCTGCACC
GCCTTCCGCGGTCAGGGATTGTAGCAAGCAATCCGGATCGTAGCGCTGCA
TGGCGCCATATAGAATCTGATCCCTCACGCCTTTGGGGAAGCCTATTTTA
TCCGCTTCATCGCG

BS18088.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31251-PA 921 CG31251-RA 124..921 814..17 3990 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31251-RA 1060 CG31251-RA 194..992 814..16 3995 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17684155..17684665 304..814 2555 100 Plus
3R 32079331 3R 17683808..17684096 16..304 1445 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:30:26 has no hits.

BS18088.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:22 Download gff for BS18088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31251-PA 124..921 17..814 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:43 Download gff for BS18088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31251-RA 194..997 7..814 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:38 Download gff for BS18088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31251-RA 194..997 7..814 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:38 Download gff for BS18088.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17683803..17684095 7..303 98 <- Plus
3R 17684155..17684665 304..814 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:43 Download gff for BS18088.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13509525..13509817 7..303 98 <- Plus
arm_3R 13509877..13510387 304..814 100   Plus

BS18088.5prime Sequence

821 bp (655 high quality bases) assembled on 2007-06-06

> BS18088.5prime
GAAGTTATCAGTCGACATGGACTTTCAGCGAAACGATGCTATGCTCATGG
AAATTCTGCAGGATCGGAAAACTATTACAGGTTTCCTGGACTCCATTTTC
GGATTTCTGCGACGCAACACCGACTTTTATCACACAAAACGCGATGAAGC
GGATAAAATAGGCTTCCCCAAAGGCGTGAGGGATCAGATTCTATATGGCG
CCATGCAGCGCTACGATCCGGATTGCTTGCTACAATCCCTGACCGCGGAA
GGCGGTGCAGATGATGGAGAAACGGCTCCGCCTGCCGTCGAAGAAGTGGT
CCTGGAAAGCGAAGATGGTCCTCAGGACGAGGAAATGAAACCCATAGAGA
GCCAGCCGCCACAAAAAGGGAAGGAGCAGTCAAAGTTCTCCCCCAGCGAC
TACAAAAACGGAGATGTGTTCGAAACGCACTGCTGGTCACAAACCCTCAA
GGATGTGGAGGTGCAGGCTCTGCTTCCCAAGGATCATCAAACGGCGAAGA
AGCTGCACATTTCAATTCAGGCCCAGCACATCAAAGTGAGCAGCAAGCAT
AGCCCAGAGACGATCATCCTCGAGGGAAACCTGAGCCAGCGGATTAAACA
CAAGGAGGCGGTGTGGACAATTGATCAGAACCGATTGATCATAAGTTACG
ATAAAGCAAAGGAGCTCTGGTGGGATCGGCTCTTCGAAGGTGATCCAGAA
ATCGATTCCAAGAAGATTGAATGCGAACGCTATATAGATGATTTGCCGGA
GGAAACCCAGGCCACCATAGAAAAGCTTAGGGTCCAGCAGTTGGCAGCAG
ACAAGCAACAAAATGAAATTC

BS18088.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG31251-PA 921 CG31251-RA 1..805 17..821 4025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG31251-RA 1060 CG31251-RA 71..875 17..821 4025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17684155..17684687 650..118 2665 100 Minus
3R 32079331 3R 17683925..17684096 821..650 860 100 Minus
3R 32079331 3R 17684745..17684845 117..17 505 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:30:38 has no hits.

BS18088.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:26 Download gff for BS18088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31251-PA 1..805 17..821 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:45 Download gff for BS18088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31251-RA 71..875 17..821 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:46 Download gff for BS18088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31251-RA 71..875 17..821 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:46 Download gff for BS18088.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17683925..17684095 651..821 100 <- Minus
3R 17684155..17684687 118..650 100 <- Minus
3R 17684745..17684845 17..117 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:45 Download gff for BS18088.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13509647..13509817 651..821 100 <- Minus
arm_3R 13509877..13510409 118..650 100 <- Minus
arm_3R 13510467..13510567 17..117 100   Minus

BS18088.pep Sequence

Translation from 16 to 936

> BS18088.pep
MDFQRNDAMLMEILQDRKTITGFLDSIFGFLRRNTDFYHTKRDEADKIGF
PKGVRDQILYGAMQRYDPDCLLQSLTAEGGADDGETAPPAVEEVVLESED
GPQDEEMKPIESQPPQKGKEQSKFSPSDYKNGDVFETHCWSQTLKDVEVQ
ALLPKDHQTAKKLHISIQAQHIKVSSKHSPETIILEGNLSQRIKHKEAVW
TIDQNRLIISYDKAKELWWDRLFEGDPEIDSKKIECERYIDDLPEETQAT
IEKLRVQQLAADKQQNEIQTSSPDQAINLDRLKAAWDAEGSPFKGQPFDP
SIVRMS*

BS18088.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG31251-PA 306 CG31251-PA 1..306 1..306 1607 100 Plus
nudC-PB 332 CG9710-PB 26..295 23..258 194 27.4 Plus
nudC-PA 332 CG9710-PA 26..295 23..258 194 27.4 Plus