Clone Sequence Records
BS18088.complete Sequence
953 bp assembled on 2010-02-09
GenBank Submission: KX804556
> BS18088.complete
GAAGTTATCAGTCGACATGGACTTTCAGCGAAACGATGCTATGCTCATGG
AAATTCTGCAGGATCGGAAAACTATTACAGGTTTCCTGGACTCCATTTTC
GGATTTCTGCGACGCAACACCGACTTTTATCACACAAAACGCGATGAAGC
GGATAAAATAGGCTTCCCCAAAGGCGTGAGGGATCAGATTCTATATGGCG
CCATGCAGCGCTACGATCCGGATTGCTTGCTACAATCCCTGACCGCGGAA
GGCGGTGCAGATGATGGAGAAACGGCTCCGCCTGCCGTCGAAGAAGTGGT
CCTGGAAAGCGAAGATGGTCCTCAGGACGAGGAAATGAAACCCATAGAGA
GCCAGCCGCCACAAAAAGGGAAGGAGCAGTCAAAGTTCTCCCCCAGCGAC
TACAAAAACGGAGATGTGTTCGAAACGCACTGCTGGTCACAAACCCTCAA
GGATGTGGAGGTGCAGGCTCTGCTTCCCAAGGATCATCAAACGGCGAAGA
AGCTGCACATTTCAATTCAGGCCCAGCACATCAAAGTGAGCAGCAAGCAT
AGCCCAGAGACGATCATCCTCGAGGGAAACCTGAGCCAGCGGATTAAACA
CAAGGAGGCGGTGTGGACAATTGATCAGAACCGATTGATCATAAGTTACG
ATAAAGCAAAGGAGCTCTGGTGGGATCGGCTCTTCGAAGGTGATCCAGAA
ATCGATTCCAAGAAGATTGAATGCGAACGCTATATAGATGATTTGCCGGA
GGAAACCCAGGCCACCATAGAAAAGCTTAGGGTCCAGCAGTTGGCAGCAG
ACAAGCAACAAAATGAAATTCAGACCTCAAGTCCCGACCAAGCTATAAAC
CTGGATCGCCTGAAAGCTGCCTGGGATGCCGAAGGTTCGCCGTTTAAAGG
ACAGCCCTTTGATCCTTCTATCGTAAGAATGAGTTAAAAGCTTTCTAGAC
CAT
BS18088.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31251-RA | 921 | CG31251-PA | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31251-RA | 1060 | CG31251-RA | 71..992 | 17..938 | 4610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17684155..17684687 | 650..118 | 2665 | 100 | Minus |
3R | 32079331 | 3R | 17683808..17684096 | 938..650 | 1445 | 100 | Minus |
3R | 32079331 | 3R | 17684745..17684845 | 117..17 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:05:46 has no hits.
BS18088.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:08 Download gff for
BS18088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-RA | 1..921 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:57 Download gff for
BS18088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-RA | 67..985 | 17..935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:06 Download gff for
BS18088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-RA | 71..989 | 17..935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:08 Download gff for
BS18088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-RA | 67..987 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:39 Download gff for
BS18088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-RA | 71..989 | 17..935 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:39 Download gff for
BS18088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17683811..17684095 | 651..935 | 100 | <- | Minus |
3R | 17684155..17684687 | 118..650 | 100 | <- | Minus |
3R | 17684745..17684845 | 17..117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:06 Download gff for
BS18088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13509533..13509817 | 651..935 | 100 | <- | Minus |
arm_3R | 13509877..13510409 | 118..650 | 100 | <- | Minus |
arm_3R | 13510467..13510567 | 17..117 | 100 | | Minus |
BS18088.3prime Sequence
814 bp (785 high quality bases) assembled on 2007-06-06
> BS18088.3prime
ATGGTCTAGAAAGCTTTTAACTCATTCTTACGATAGAAGGATCAAAGGGC
TGTCCTTTAAACGGCGAACCTTCGGCATCCCAGGCAGCTTTCAGGCGATC
CAGGTTTATAGCTTGGTCGGGACTTGAGGTCTGAATTTCATTTTGTTGCT
TGTCTGCTGCCAACTGCTGGACCCTAAGCTTTTCTATGGTGGCCTGGGTT
TCCTCCGGCAAATCATCTATATAGCGTTCGCATTCAATCTTCTTGGAATC
GATTTCTGGATCACCTTCGAAGAGCCGATCCCACCAGAGCTCCTTTGCTT
TATCGTAACTTATGATCAATCGGTTCTGATCAATTGTCCACACCGCCTCC
TTGTGTTTAATCCGCTGGCTCAGGTTTCCCTCGAGGATGATCGTCTCTGG
GCTATGCTTGCTGCTCACTTTGATGTGCTGGGCCTGAATTGAAATGTGCA
GCTTCTTCGCCGTTTGATGATCCTTGGGAAGCAGAGCCTGCACCTCCACA
TCCTTGAGGGTTTGTGACCAGCAGTGCGTTTCGAACACATCTCCGTTTTT
GTAGTCGCTGGGGGAGAACTTTGACTGCTCCTTCCCTTTTTGTGGCGGCT
GGCTCTCTATGGGTTTCATTTCCTCGTCCTGAGGACCATCTTCGCTTTCC
AGGACCACTTCTTCGACGGCAGGCGGAGCCGTTTCTCCATCATCTGCACC
GCCTTCCGCGGTCAGGGATTGTAGCAAGCAATCCGGATCGTAGCGCTGCA
TGGCGCCATATAGAATCTGATCCCTCACGCCTTTGGGGAAGCCTATTTTA
TCCGCTTCATCGCG
BS18088.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31251-PA | 921 | CG31251-RA | 124..921 | 814..17 | 3990 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31251-RA | 1060 | CG31251-RA | 194..992 | 814..16 | 3995 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17684155..17684665 | 304..814 | 2555 | 100 | Plus |
3R | 32079331 | 3R | 17683808..17684096 | 16..304 | 1445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:30:26 has no hits.
BS18088.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:22 Download gff for
BS18088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-PA | 124..921 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:43 Download gff for
BS18088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-RA | 194..997 | 7..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:38 Download gff for
BS18088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-RA | 194..997 | 7..814 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:38 Download gff for
BS18088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17683803..17684095 | 7..303 | 98 | <- | Plus |
3R | 17684155..17684665 | 304..814 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:43 Download gff for
BS18088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13509525..13509817 | 7..303 | 98 | <- | Plus |
arm_3R | 13509877..13510387 | 304..814 | 100 | | Plus |
BS18088.5prime Sequence
821 bp (655 high quality bases) assembled on 2007-06-06
> BS18088.5prime
GAAGTTATCAGTCGACATGGACTTTCAGCGAAACGATGCTATGCTCATGG
AAATTCTGCAGGATCGGAAAACTATTACAGGTTTCCTGGACTCCATTTTC
GGATTTCTGCGACGCAACACCGACTTTTATCACACAAAACGCGATGAAGC
GGATAAAATAGGCTTCCCCAAAGGCGTGAGGGATCAGATTCTATATGGCG
CCATGCAGCGCTACGATCCGGATTGCTTGCTACAATCCCTGACCGCGGAA
GGCGGTGCAGATGATGGAGAAACGGCTCCGCCTGCCGTCGAAGAAGTGGT
CCTGGAAAGCGAAGATGGTCCTCAGGACGAGGAAATGAAACCCATAGAGA
GCCAGCCGCCACAAAAAGGGAAGGAGCAGTCAAAGTTCTCCCCCAGCGAC
TACAAAAACGGAGATGTGTTCGAAACGCACTGCTGGTCACAAACCCTCAA
GGATGTGGAGGTGCAGGCTCTGCTTCCCAAGGATCATCAAACGGCGAAGA
AGCTGCACATTTCAATTCAGGCCCAGCACATCAAAGTGAGCAGCAAGCAT
AGCCCAGAGACGATCATCCTCGAGGGAAACCTGAGCCAGCGGATTAAACA
CAAGGAGGCGGTGTGGACAATTGATCAGAACCGATTGATCATAAGTTACG
ATAAAGCAAAGGAGCTCTGGTGGGATCGGCTCTTCGAAGGTGATCCAGAA
ATCGATTCCAAGAAGATTGAATGCGAACGCTATATAGATGATTTGCCGGA
GGAAACCCAGGCCACCATAGAAAAGCTTAGGGTCCAGCAGTTGGCAGCAG
ACAAGCAACAAAATGAAATTC
BS18088.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31251-PA | 921 | CG31251-RA | 1..805 | 17..821 | 4025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31251-RA | 1060 | CG31251-RA | 71..875 | 17..821 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:30:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17684155..17684687 | 650..118 | 2665 | 100 | Minus |
3R | 32079331 | 3R | 17683925..17684096 | 821..650 | 860 | 100 | Minus |
3R | 32079331 | 3R | 17684745..17684845 | 117..17 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:30:38 has no hits.
BS18088.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:26 Download gff for
BS18088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-PA | 1..805 | 17..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:45 Download gff for
BS18088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-RA | 71..875 | 17..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:46 Download gff for
BS18088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-RA | 71..875 | 17..821 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:46 Download gff for
BS18088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17683925..17684095 | 651..821 | 100 | <- | Minus |
3R | 17684155..17684687 | 118..650 | 100 | <- | Minus |
3R | 17684745..17684845 | 17..117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:45 Download gff for
BS18088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13509647..13509817 | 651..821 | 100 | <- | Minus |
arm_3R | 13509877..13510409 | 118..650 | 100 | <- | Minus |
arm_3R | 13510467..13510567 | 17..117 | 100 | | Minus |
BS18088.pep Sequence
Translation from 16 to 936
> BS18088.pep
MDFQRNDAMLMEILQDRKTITGFLDSIFGFLRRNTDFYHTKRDEADKIGF
PKGVRDQILYGAMQRYDPDCLLQSLTAEGGADDGETAPPAVEEVVLESED
GPQDEEMKPIESQPPQKGKEQSKFSPSDYKNGDVFETHCWSQTLKDVEVQ
ALLPKDHQTAKKLHISIQAQHIKVSSKHSPETIILEGNLSQRIKHKEAVW
TIDQNRLIISYDKAKELWWDRLFEGDPEIDSKKIECERYIDDLPEETQAT
IEKLRVQQLAADKQQNEIQTSSPDQAINLDRLKAAWDAEGSPFKGQPFDP
SIVRMS*
BS18088.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31251-PA | 306 | CG31251-PA | 1..306 | 1..306 | 1607 | 100 | Plus |
nudC-PB | 332 | CG9710-PB | 26..295 | 23..258 | 194 | 27.4 | Plus |
nudC-PA | 332 | CG9710-PA | 26..295 | 23..258 | 194 | 27.4 | Plus |