Clone BS18091 Report

Search the DGRC for BS18091

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:91
Vector:pDNR-Dual
Associated Gene/Transcriptmod(r)-RA
Protein status:BS18091.pep: full length peptide match
Sequenced Size:635

Clone Sequence Records

BS18091.complete Sequence

635 bp assembled on 2010-02-09

GenBank Submission: KX805247

> BS18091.complete
GAAGTTATCAGTCGACATGCCGACTACACCACAGGATCTTGCCCTTGCCC
ACTCTCTTGCTCAAAGACCTCCGACCGATAGCAGTGAGGCCAAGGAGCAG
GAGGCCGGCGAATCGGACAACCTGCCCAACCTGTGCACTTTGTCGCTGGA
CGAACTGAAACAGCTGGACAGGGATCCCGAGTTCTTCGAGGACTTCATCG
AGGAGATGTCCGTGGTGCAGTACCTGAACGAGGAGCTCGATTCAATGATG
GACCAGGTGGAGATTATATCAAGAGAGAACGAGTGCAAGGGCATTCATCT
GGTAGAGCTGAAGCGCCGACTCAGCGACGATTTTACAGCTTTAAAAAACC
TAGGCGAGAAATGCGACCGGCTGAACAAGAAGTACTTCAAGAAGTCGGAT
GAATACGCGCCTCAGCATATCAGGGAGCTTCTTCAGATTGCAGCTTCCAA
TGCCGATGGCGACTGCGATCGTCACGTGGAGCACTTCCTGAACGGAAAGA
CCGACGTGCAGACTTTCCTCAACACGTACCAGTGGTCGAAGAAGATCAGT
ACCGAGCGCAAGGCCAAAGAGGAGCGCCTGGGCACCCAGCTCAGTGCTCT
GGAGCGGGCCGGTATCTAGAAGCTTTCTAGACCAT

BS18091.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
mod(r)-RF 603 CG17828-PF 1..603 17..619 3015 100 Plus
mod(r)-RC 603 CG17828-PC 1..603 17..619 3015 100 Plus
mod(r)-RA 603 CG17828-PA 1..603 17..619 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
mod(r)-RF 1294 CG17828-RF 269..871 17..619 3015 100 Plus
mod(r)-RC 1332 CG17828-RC 307..909 17..619 3015 100 Plus
mod(r)-RA 1343 CG17828-RA 318..920 17..619 3015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 621891..622151 17..277 1290 99.6 Plus
X 23542271 X 622433..622628 424..619 980 100 Plus
X 23542271 X 622207..622359 273..425 765 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:05:59 has no hits.

BS18091.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:09 Download gff for BS18091.complete
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RC 1..603 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:59 Download gff for BS18091.complete
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RC 301..903 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:12 Download gff for BS18091.complete
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RA 318..920 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:09 Download gff for BS18091.complete
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RC 296..907 12..625 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:46 Download gff for BS18091.complete
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RA 318..920 17..619 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:46 Download gff for BS18091.complete
Subject Subject Range Query Range Percent Splice Strand
X 621891..622146 17..272 100 -> Plus
X 622207..622358 273..424 100 -> Plus
X 622434..622628 425..619 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:12 Download gff for BS18091.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 515924..516179 17..272 100 -> Plus
arm_X 516240..516391 273..424 100 -> Plus
arm_X 516467..516661 425..619 100   Plus

BS18091.3prime Sequence

633 bp (449 high quality bases) assembled on 2007-06-06

> BS18091.3prime
ATGGTCTAGAAAGCTTCTAGATACCGGCCCGCTCCAGAGCACTGAGCTGG
GTGCCCAGGCGCTCCTCTTTGGCCTTGCGCTCGGTACTGATCTTCTTCGA
CCACTGGTACGTGTTGAGGAAAGTCTGCACGTCGGTCTTTCCGTTCAGGA
AGTGCTCCACGTGACGATCGCAGTCGCCATCGGCATTGGAAGCTGCAATC
TGAAGAAGCTCCCTGATATGCTGAGGCGCGTATTCATCCGACTTCTTGAA
GTACTTCTTGTTCAGCCGGTCGCATTTCTCGCCTAGGTTTTTTAAAGCTG
TAAAATCGTCGCTGAGTCGGCGCTTCAGCTCTACCAGATGAATGCCCTTG
CACTCGTTCTCTCTTGATATAATCTCCACCTGGTCCATCATTGAATCGAG
CTCCTCGTTCAGGTACTGCACCACGGACATCTCCTCGATGAAGTCCTCGA
AGAACTCGGGATCCCTGTCCAGCTGTTTCAGTTCGTCCAGCGACAAAGTG
CACAGGTTGGGCAGGTTGTCCGATTCGCCGGCCTCCTGCTCCTTGGCCTC
ACTGCTATCGGTCGGAGGTCTTTGAGCAAGAGAGTGGGCAAGGGCAAGAT
CCTGTGGTGTAGTCGGCATGTCGACTGATAACT

BS18091.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17828-PA 603 mod(r)-RA 1..603 619..17 3015 100 Minus
CG17828-PC 603 mod(r)-RC 1..603 619..17 3015 100 Minus
CG17828-PB 591 mod(r)-RB 1..408 619..212 2040 100 Minus
CG17828-PD 591 mod(r)-RD 1..408 619..212 2040 100 Minus
CG17828-PB 591 mod(r)-RB 408..591 200..17 920 100 Minus
CG17828-PD 591 mod(r)-RD 408..591 200..17 920 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
mod(r)-RF 1294 CG17828-RF 269..871 619..17 3015 100 Minus
mod(r)-RC 1332 CG17828-RC 307..909 619..17 3015 100 Minus
mod(r)-RA 1343 CG17828-RA 318..920 619..17 3015 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 621891..622151 619..359 1290 99.6 Minus
X 23542271 X 622433..622628 212..17 980 100 Minus
X 23542271 X 622207..622359 363..211 765 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:04:10 has no hits.

BS18091.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:36 Download gff for BS18091.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17828-PC 1..603 17..619 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:45:59 Download gff for BS18091.3prime
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RA 313..924 11..624 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:42 Download gff for BS18091.3prime
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RA 313..924 11..624 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:42 Download gff for BS18091.3prime
Subject Subject Range Query Range Percent Splice Strand
X 621886..622146 364..624 99 -> Minus
X 622207..622358 212..363 100 -> Minus
X 622434..622632 11..211 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:45:59 Download gff for BS18091.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 515919..516179 364..624 99 -> Minus
arm_X 516240..516391 212..363 100 -> Minus
arm_X 516467..516665 11..211 98   Minus

BS18091.5prime Sequence

633 bp (633 high quality bases) assembled on 2007-06-06

> BS18091.5prime
GAAGTTATCAGTCGACATGCCGACTACACCACAGGATCTTGCCCTTGCCC
ACTCTCTTGCTCAAAGACCTCCGACCGATAGCAGTGAGGCCAAGGAGCAG
GAGGCCGGCGAATCGGACAACCTGCCCAACCTGTGCACTTTGTCGCTGGA
CGAACTGAAACAGCTGGACAGGGATCCCGAGTTCTTCGAGGACTTCATCG
AGGAGATGTCCGTGGTGCAGTACCTGAACGAGGAGCTCGATTCAATGATG
GACCAGGTGGAGATTATATCAAGAGAGAACGAGTGCAAGGGCATTCATCT
GGTAGAGCTGAAGCGCCGACTCAGCGACGATTTTACAGCTTTAAAAAACC
TAGGCGAGAAATGCGACCGGCTGAACAAGAAGTACTTCAAGAAGTCGGAT
GAATACGCGCCTCAGCATATCAGGGAGCTTCTTCAGATTGCAGCTTCCAA
TGCCGATGGCGACTGCGATCGTCACGTGGAGCACTTCCTGAACGGAAAGA
CCGACGTGCAGACTTTCCTCAACACGTACCAGTGGTCGAAGAAGATCAGT
ACCGAGCGCAAGGCCAAAGAGGAGCGCCTGGGCACCCAGCTCAGTGCTCT
GGAGCGGGCCGGTATCTAGAAGCTTTCTAGACC

BS18091.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG17828-PA 603 mod(r)-RA 1..603 17..619 3015 100 Plus
CG17828-PC 603 mod(r)-RC 1..603 17..619 3015 100 Plus
CG17828-PB 591 mod(r)-RB 1..408 17..424 2040 100 Plus
CG17828-PD 591 mod(r)-RD 1..408 17..424 2040 100 Plus
CG17828-PB 591 mod(r)-RB 408..591 436..619 920 100 Plus
CG17828-PD 591 mod(r)-RD 408..591 436..619 920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
mod(r)-RF 1294 CG17828-RF 269..871 17..619 3015 100 Plus
mod(r)-RC 1332 CG17828-RC 307..909 17..619 3015 100 Plus
mod(r)-RA 1343 CG17828-RA 318..920 17..619 3015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 621891..622151 17..277 1290 99.6 Plus
X 23542271 X 622433..622628 424..619 980 100 Plus
X 23542271 X 622207..622359 273..425 765 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:09:52 has no hits.

BS18091.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:08:40 Download gff for BS18091.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17828-PC 1..603 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:12:53 Download gff for BS18091.5prime
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RA 313..924 12..625 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:18 Download gff for BS18091.5prime
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RA 313..924 12..625 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:18 Download gff for BS18091.5prime
Subject Subject Range Query Range Percent Splice Strand
X 621886..622146 12..272 99 -> Plus
X 622207..622358 273..424 100 -> Plus
X 622434..622632 425..625 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:12:53 Download gff for BS18091.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 515919..516179 12..272 99 -> Plus
arm_X 516240..516391 273..424 100 -> Plus
arm_X 516467..516665 425..625 98   Plus

BS18091.pep Sequence

Translation from 16 to 618

> BS18091.pep
MPTTPQDLALAHSLAQRPPTDSSEAKEQEAGESDNLPNLCTLSLDELKQL
DRDPEFFEDFIEEMSVVQYLNEELDSMMDQVEIISRENECKGIHLVELKR
RLSDDFTALKNLGEKCDRLNKKYFKKSDEYAPQHIRELLQIAASNADGDC
DRHVEHFLNGKTDVQTFLNTYQWSKKISTERKAKEERLGTQLSALERAGI
*

BS18091.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
mod(r)-PF 200 CG17828-PF 1..200 1..200 1034 100 Plus
mod(r)-PC 200 CG17828-PC 1..200 1..200 1034 100 Plus
mod(r)-PA 200 CG17828-PA 1..200 1..200 1034 100 Plus
mod(r)-PE 196 CG17828-PE 1..196 1..200 1001 98 Plus
mod(r)-PD 196 CG17828-PD 1..196 1..200 1001 98 Plus