Clone BS18096 Report

Search the DGRC for BS18096

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG31855-RA
Protein status:BS18096.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS18096.5prime Sequence

360 bp (360 high quality bases) assembled on 2007-06-06

> BS18096.5prime
GAAGTTATCAGTCGACATGTCAGTACGAGACTTTATCAAGGGTCTGCCCA
TACACGATTCGAGCAATTTTACCCATTTGAGCAACGAACATGGAATTCGA
ACGTCGCAGAAGCGTGCCTCCGTCTACCTGCCCACCGAGGATGAGCATTC
AGAGCAGCTGATCGTGATGGACAAGCGATGTGTCCTGCTGCGCTACCTCA
CTCAGCAGTGGGACAAAAAGACGCTTCAGCGGAAGAGGGAGCACGGCGGC
GATTCGGGAAATGGCAACGGCAACAGCTCCACGCCCAACGGCAACAGCAC
CAACAGCAAAAAGCGCCCGCGCTTGGACCCCAACGAGCTGAACTGAAAGC
TTTCTAGACC

BS18096.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31855-PA 330 CG31855-RA 1..330 17..346 1650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG31855-RB 1126 CG31855-RB 198..527 17..346 1650 100 Plus
CG31855-RA 1064 CG31855-RA 136..465 17..346 1650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13369401..13369730 17..346 1650 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:04:34 has no hits.

BS18096.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:09:25 Download gff for BS18096.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31855-PA 1..330 17..346 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:46:05 Download gff for BS18096.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 130..468 10..351 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:52 Download gff for BS18096.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 130..468 10..351 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:52 Download gff for BS18096.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13369395..13369733 10..351 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:46:05 Download gff for BS18096.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13369395..13369733 10..351 98   Plus

BS18096.3prime Sequence

365 bp (365 high quality bases) assembled on 2007-06-06

> BS18096.3prime
CACGAATGGTCTAGAAAGCTTTCAGTTCAGCTCGTTGGGGTCCAAGCGCG
GGCGCTTTTTGCTGTTGGTGCTGTTGCCGTTGGGCGTGGAGCTGTTGCCG
TTGCCATTTCCCGAATCGCCGCCGTGCTCCCTCTTCCGCTGAAGCGTCTT
TTTGTCCCACTGCTGAGTGAGGTAGCGCAGCAGGACACATCGCTTGTCCA
TCACGATCAGCTGCTCTGAATGCTCATCCTCGGTGGGCAGGTAGACGGAG
GCACGCTTCTGCGACGTTCGAATTCCATGTTCGTTGCTCAAATGGGTAAA
ATTGCTCGAATCGTGTATGGGCAGACCCTTGATAAAGTCTCGTACTGACA
TGTCGACTGATAACT

BS18096.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31855-PA 330 CG31855-RA 1..330 351..22 1650 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31855-RB 1126 CG31855-RB 198..527 351..22 1650 100 Minus
CG31855-RA 1064 CG31855-RA 136..465 351..22 1650 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13369401..13369730 351..22 1650 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:30:48 has no hits.

BS18096.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:09:20 Download gff for BS18096.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31855-PA 1..330 22..351 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:48 Download gff for BS18096.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 130..468 17..358 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:52 Download gff for BS18096.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 130..468 17..358 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:52 Download gff for BS18096.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13369395..13369733 17..358 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:48 Download gff for BS18096.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13369395..13369733 17..358 98   Minus

BS18096.complete Sequence

362 bp assembled on 2007-06-21

GenBank Submission: KX801810

> BS18096.complete
GAAGTTATCAGTCGACATGTCAGTACGAGACTTTATCAAGGGTCTGCCCA
TACACGATTCGAGCAATTTTACCCATTTGAGCAACGAACATGGAATTCGA
ACGTCGCAGAAGCGTGCCTCCGTCTACCTGCCCACCGAGGATGAGCATTC
AGAGCAGCTGATCGTGATGGACAAGCGATGTGTCCTGCTGCGCTACCTCA
CTCAGCAGTGGGACAAAAAGACGCTTCAGCGGAAGAGGGAGCACGGCGGC
GATTCGGGAAATGGCAACGGCAACAGCTCCACGCCCAACGGCAACAGCAC
CAACAGCAAAAAGCGCCCGCGCTTGGACCCCAACGAGCTGAACTGAAAGC
TTTCTAGACCAT

BS18096.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31855-RB 330 CG31855-PB 1..330 17..346 1650 100 Plus
CG31855-RA 330 CG31855-PA 1..330 17..346 1650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31855-RB 1126 CG31855-RB 198..527 17..346 1650 100 Plus
CG31855-RA 1064 CG31855-RA 136..465 17..346 1650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13369401..13369730 17..346 1650 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:02:11 has no hits.

BS18096.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:10 Download gff for BS18096.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RB 1..330 17..346 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:53:35 Download gff for BS18096.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RB 203..541 10..351 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:21 Download gff for BS18096.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 136..464 17..345 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:11 Download gff for BS18096.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RB 203..541 10..351 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:15 Download gff for BS18096.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 136..464 17..345 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:15 Download gff for BS18096.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13369401..13369729 17..345 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:21 Download gff for BS18096.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13369401..13369729 17..345 100   Plus

BS18096.pep Sequence

Translation from 16 to 345

> BS18096.pep
MSVRDFIKGLPIHDSSNFTHLSNEHGIRTSQKRASVYLPTEDEHSEQLIV
MDKRCVLLRYLTQQWDKKTLQRKREHGGDSGNGNGNSSTPNGNSTNSKKR
PRLDPNELN*

BS18096.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31855-PB 109 CG31855-PB 1..109 1..109 580 100 Plus
CG31855-PA 109 CG31855-PA 1..109 1..109 580 100 Plus