Clone Sequence Records
BS18103.complete Sequence
1283 bp assembled on 2009-12-07
GenBank Submission: KX804533
> BS18103.complete
GAAGTTATCAGTCGACATGGCGGAGAACGGACTGCGCGTGCCAGGGTCAT
CCGCGGTGGCCTCTGCGGTGGCTTCCACTGCGACGGGAGTCGGCGGTGGA
TCAGCAGCGGGAACTGCGGGGGCCGGGACAGGAGTGGTGCCCACCGGCGT
CAGCGGCGGGACGAGCAACGGGGAGCATGAGAACGAACACAACGCCAACG
CAGACGGCGAGAAGGCCCAGCCGGCGCCGGCGGTCCAGAAGTACATGCAG
GAGCTCATGACGGAGCGATCGCGCATGGAAAACCACTTCCCCCTGGCGGT
GAAGCTAATTGACGAAGCTCTGGAGCGTGTGCAGCTAAACGGACGCATTC
CCACGAGAGACCAGTACGCCGATGTCTACCAGCAGCGCACCATCAAGCTG
TCCCAAAAAGTGCACGTGCCCATCAAGGACAAGAAGTTCAACTATGTGGG
CAAGCTACTGGGGCCCAAGGGCAACTCACTGCGTCGCCTGCAGGAGGAGA
CGCAGTGCAAGATCGTCATACTTGGTCGCTTCTCAATGAAGGATCGCGCA
CGTGAGGAGGAGCTGCGCAACTCCGCGGACGCGAAGTACGCCCACCTGAA
TCTTCCTCTGCACGTCGAGGTGTCCACCATTGCTCCGCCCGCCGAGGCGT
ACGCTCGGGTGGCGTATGCCCTGGCCGAGATTCGGCGGTACCTCACGCCG
GACAAGCACGATGACATCCGCCAAGAGCAGTACCGCGAACTCATGGAGGA
TCCGGAGGCGGCCAAGAAGCTGACGCTTCGCCAGCTGCAACAGCAGTCGA
ATGCGGCAGCTAGTGGTGCAGGAGGAGGAGGCGGTGGTGGAGGCGGAAAC
GGAAATGGCGGCGCAGCTGGATCCGGCAGCAATAATGGCAATGGGAACCA
GCGCTCCGGCGGCAACTACAGACAAAAGTTTCAGCAACAATCACACTATC
GCCACAACGAGGAGACTGTCTATTTTCGCTCACACAACAATGCGTACCAC
CAGCCAAAACCCTATGTGCCAGCCGCCCAACGGGGCAATGCCATGCACAC
CACCTTGCCACCGCAAGCAATTGTGCGAGCCTCACCGCCCGGAATGGTCG
TCAGTGCGGCCAGCTTCAATGGCCGAAATGCCGGACTGGGTAATGCCGGC
GGTGGCGGAATCATGGCCAATAGCATCGTGGCCACCACTGGCGGTGGCAT
CGGTGGCGCTGTGCCGCCTAACATGCGTTACCGTCCCGCTGCCCCCTACC
AGTTTGTCAAGAAATAAAAGCTTTCTAGACCAT
BS18103.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:35:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qkr58E-2-RB | 1251 | CG5821-PB | 1..1251 | 17..1267 | 6255 | 100 | Plus |
qkr58E-2-RC | 1251 | CG5821-PC | 1..1251 | 17..1267 | 6255 | 100 | Plus |
qkr58E-2-RA | 1251 | CG5821-PA | 1..1251 | 17..1267 | 6255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qkr58E-2-RB | 2947 | CG5821-RB | 258..1508 | 17..1267 | 6255 | 100 | Plus |
qkr58E-2-RC | 2907 | CG5821-RC | 507..1757 | 17..1267 | 6255 | 100 | Plus |
qkr58E-2-RA | 2658 | CG5821-RA | 258..1508 | 17..1267 | 6255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22416426..22417031 | 316..921 | 3030 | 100 | Plus |
2R | 25286936 | 2R | 22416066..22416366 | 17..317 | 1505 | 100 | Plus |
2R | 25286936 | 2R | 22417249..22417496 | 1020..1267 | 1240 | 100 | Plus |
2R | 25286936 | 2R | 22417091..22417196 | 917..1022 | 530 | 100 | Plus |
2R | 25286936 | 2R | 21773807..21773885 | 435..513 | 245 | 87.3 | Plus |
2R | 25286936 | 2R | 22410975..22411039 | 513..449 | 235 | 90.8 | Minus |
2R | 25286936 | 2R | 22595165..22595235 | 449..519 | 235 | 88.7 | Plus |
2L | 23513712 | 2L | 20863694..20863758 | 513..449 | 220 | 89.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:35:51 has no hits.
BS18103.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:12 Download gff for
BS18103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-2-RA | 1..1251 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:44 Download gff for
BS18103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-2-RA | 254..1495 | 17..1258 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:15 Download gff for
BS18103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-2-RA | 258..1499 | 17..1258 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:12 Download gff for
BS18103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-2-RA | 254..1504 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:21 Download gff for
BS18103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-2-RA | 258..1499 | 17..1258 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:21 Download gff for
BS18103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22417252..22417487 | 1023..1258 | 100 | | Plus |
2R | 22416066..22416366 | 17..317 | 100 | -> | Plus |
2R | 22416428..22417031 | 318..921 | 100 | -> | Plus |
2R | 22417096..22417196 | 922..1022 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:15 Download gff for
BS18103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18303571..18303871 | 17..317 | 100 | -> | Plus |
arm_2R | 18303933..18304536 | 318..921 | 100 | -> | Plus |
arm_2R | 18304601..18304701 | 922..1022 | 100 | -> | Plus |
arm_2R | 18304757..18304992 | 1023..1258 | 100 | | Plus |
BS18103.3prime Sequence
880 bp (764 high quality bases) assembled on 2007-06-06
> BS18103.3prime
ATGGTCTAGAAAGCTTTTATTTCTTGACAAACTGGTAGGGGGCAGCGGGA
CGGTAACGCATGTTAGGCGGCACAGCGCCACCGATGCCACCGCCAGTGGT
GGCCACGATGCTATTGGCCATGATTCCGCCACCGCCGGCATTACCCAGTC
CGGCATTTCGGCCATTGAAGCTGGCCGCACTGACGACCATTCCGGGCGGT
GAGGCTCGCACAATTGCTTGCGGTGGCAAGGTGGTGTGCATGGCATTGCC
CCGTTGGGCGGCTGGCACATAGGGTTTTGGCTGGTGGTACGCATTGTTGT
GTGAGCGAAAATAGACAGTCTCCTCGTTGTGGCGATAGTGTGATTGTTGC
TGAAACTTTTGTCTGTAGTTGCCGCCGGAGCGCTGGTTCCCATTGCCATT
ATTGCTGCCGGATCCAGCTGCGCCGCCATTTCCGTTTCCGCCTCCACCAC
CGCCTCCTCCTCCTGCACCACTAGCTGCCGCATTCGACTGCTGTTGCAGC
TGGCGAAGCGTCAGCTTCTTGGCCGCCTCCGGATCCTCCATGAGTTCGCG
GTACTGCTCTTGGCGGATGTCATCGTGCTTGTCCGGCGTGAGGTACCGCC
GAATCTCGGCCAGGGCATACGCCACCCGAGCGTACGCCTCGGCGGGCGGA
GCAATGGTGGACACCTCGACGTGCAGAGGAAGATTCAGGTGGGCGTACTT
CGCGTCCGCGGAGTTGCGCAGCTCCTCCTCACGTGCGCGATCCTTCATTG
AGAAGCGACCAAGTATGACGATCTTGCACTGCGTCTCCTCCTGCAGGCGA
CGCAGTGAGTTGCCCTTGGGCCCCAGTAGCTTGCCCACATAGTTGAACTT
CTTGTCCTTGATGGGCACGTGCACTTTTTG
BS18103.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5821-PA | 1251 | qkr58E-2-RA | 388..1251 | 880..17 | 4320 | 100 | Minus |
CG4021-PA | 960 | CG4021-RA | 313..368 | 826..771 | 180 | 92.8 | Minus |
CG3584-PA | 963 | qkr58E-3-RA | 310..365 | 826..771 | 180 | 92.8 | Minus |
CG3927-PA | 813 | CG3927-RA | 307..365 | 823..765 | 170 | 91.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:19:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qkr58E-2-RB | 2947 | CG5821-RB | 645..1508 | 880..17 | 4320 | 100 | Minus |
qkr58E-2-RC | 2907 | CG5821-RC | 894..1757 | 880..17 | 4320 | 100 | Minus |
qkr58E-2-RA | 2658 | CG5821-RA | 645..1508 | 880..17 | 4320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22416514..22417031 | 880..363 | 2590 | 100 | Minus |
2R | 25286936 | 2R | 22417249..22417496 | 264..17 | 1240 | 100 | Minus |
2R | 25286936 | 2R | 22417091..22417196 | 367..262 | 530 | 100 | Minus |
2R | 25286936 | 2R | 21773807..21773885 | 849..771 | 245 | 87.3 | Minus |
2R | 25286936 | 2R | 22410975..22411039 | 771..835 | 235 | 90.8 | Plus |
2R | 25286936 | 2R | 22595165..22595235 | 835..765 | 235 | 88.7 | Minus |
2L | 23513712 | 2L | 20863694..20863758 | 771..835 | 220 | 89.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:19:44 has no hits.
BS18103.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:09:49 Download gff for
BS18103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5821-PA | 388..1251 | 17..880 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:34 Download gff for
BS18103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-2-RA | 645..1508 | 17..880 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:35 Download gff for
BS18103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-2-RA | 645..1508 | 17..880 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:35 Download gff for
BS18103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22416514..22417031 | 363..880 | 100 | -> | Minus |
2R | 22417096..22417196 | 262..362 | 100 | -> | Minus |
2R | 22417252..22417496 | 17..261 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:34 Download gff for
BS18103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18304019..18304536 | 363..880 | 100 | -> | Minus |
arm_2R | 18304601..18304701 | 262..362 | 100 | -> | Minus |
arm_2R | 18304757..18305001 | 17..261 | 100 | | Minus |
BS18103.5prime Sequence
862 bp (811 high quality bases) assembled on 2007-06-06
> BS18103.5prime
GAAGTTATCAGTCGACATGGCGGAGAACGGACTGCGCGTGCCAGGGTCAT
CCGCGGTGGCCTCTGCGGTGGCTTCCACTGCGACGGGAGTCGGCGGTGGA
TCAGCAGCGGGAACTGCGGGGGCCGGGACAGGAGTGGTGCCCACCGGCGT
CAGCGGCGGGACGAGCAACGGGGAGCATGAGAACGAACACAACGCCAACG
CAGACGGCGAGAAGGCCCAGCCGGCGCCGGCGGTCCAGAAGTACATGCAG
GAGCTCATGACGGAGCGATCGCGCATGGAAAACCACTTCCCCCTGGCGGT
GAAGCTAATTGACGAAGCTCTGGAGCGTGTGCAGCTAAACGGACGCATTC
CCACGAGAGACCAGTACGCCGATGTCTACCAGCAGCGCACCATCAAGCTG
TCCCAAAAAGTGCACGTGCCCATCAAGGACAAGAAGTTCAACTATGTGGG
CAAGCTACTGGGGCCCAAGGGCAACTCACTGCGTCGCCTGCAGGAGGAGA
CGCAGTGCAAGATCGTCATACTTGGTCGCTTCTCAATGAAGGATCGCGCA
CGTGAGGAGGAGCTGCGCAACTCCGCGGACGCGAAGTACGCCCACCTGAA
TCTTCCTCTGCACGTCGAGGTGTCCACCATTGCTCCGCCCGCCGAGGCGT
ACGCTCGGGTGGCGTATGCCCTGGCCGAGATTCGGCGGTACCTCACGCCG
GACAAGCACGATGACATCCGCCAAGAGCAGTACCGCGAACTCATGGAGGA
TCCGGAGGCGGCCAAGAAGCTGACGCTTCGCCAGCTGCAACAGCAGTCGA
ATGCGGCAGCTAGTGGTGCAAGAGGAGGAGGCGGTGGTGGAAGCGGAAAC
GGAAATGGCGGC
BS18103.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5821-PA | 1251 | qkr58E-2-RA | 1..846 | 17..862 | 4180 | 99.7 | Plus |
CG4021-PA | 960 | CG4021-RA | 313..368 | 458..513 | 180 | 92.8 | Plus |
CG3584-PA | 963 | qkr58E-3-RA | 310..365 | 458..513 | 180 | 92.8 | Plus |
CG3927-PA | 813 | CG3927-RA | 307..365 | 461..519 | 170 | 91.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qkr58E-2-RB | 2947 | CG5821-RB | 258..1103 | 17..862 | 4200 | 99.8 | Plus |
qkr58E-2-RC | 2907 | CG5821-RC | 507..1352 | 17..862 | 4200 | 99.8 | Plus |
qkr58E-2-RA | 2658 | CG5821-RA | 258..1103 | 17..862 | 4200 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22416426..22416972 | 316..862 | 2705 | 99.6 | Plus |
2R | 25286936 | 2R | 22416066..22416366 | 17..317 | 1505 | 100 | Plus |
2R | 25286936 | 2R | 21773807..21773885 | 435..513 | 245 | 87.3 | Plus |
2R | 25286936 | 2R | 22410975..22411039 | 513..449 | 235 | 90.8 | Minus |
2R | 25286936 | 2R | 22595165..22595235 | 449..519 | 235 | 88.7 | Plus |
2L | 23513712 | 2L | 20863694..20863758 | 513..449 | 220 | 89.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:18:48 has no hits.
BS18103.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:09:54 Download gff for
BS18103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5821-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:49:20 Download gff for
BS18103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-2-RA | 258..1103 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:30 Download gff for
BS18103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-2-RA | 258..1103 | 17..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:30 Download gff for
BS18103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22416066..22416366 | 17..317 | 100 | -> | Plus |
2R | 22416428..22416972 | 318..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:49:20 Download gff for
BS18103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18303571..18303871 | 17..317 | 100 | -> | Plus |
arm_2R | 18303933..18304477 | 318..862 | 99 | | Plus |
BS18103.pep Sequence
Translation from 16 to 1266
> BS18103.pep
MAENGLRVPGSSAVASAVASTATGVGGGSAAGTAGAGTGVVPTGVSGGTS
NGEHENEHNANADGEKAQPAPAVQKYMQELMTERSRMENHFPLAVKLIDE
ALERVQLNGRIPTRDQYADVYQQRTIKLSQKVHVPIKDKKFNYVGKLLGP
KGNSLRRLQEETQCKIVILGRFSMKDRAREEELRNSADAKYAHLNLPLHV
EVSTIAPPAEAYARVAYALAEIRRYLTPDKHDDIRQEQYRELMEDPEAAK
KLTLRQLQQQSNAAASGAGGGGGGGGGNGNGGAAGSGSNNGNGNQRSGGN
YRQKFQQQSHYRHNEETVYFRSHNNAYHQPKPYVPAAQRGNAMHTTLPPQ
AIVRASPPGMVVSAASFNGRNAGLGNAGGGGIMANSIVATTGGGIGGAVP
PNMRYRPAAPYQFVKK*
BS18103.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:57:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qkr58E-2-PB | 416 | CG5821-PB | 1..416 | 1..416 | 2160 | 100 | Plus |
qkr58E-2-PC | 416 | CG5821-PC | 1..416 | 1..416 | 2160 | 100 | Plus |
qkr58E-2-PA | 416 | CG5821-PA | 1..416 | 1..416 | 2160 | 100 | Plus |
qkr54B-PD | 428 | CG4816-PD | 33..295 | 44..314 | 630 | 48.6 | Plus |
qkr54B-PB | 428 | CG4816-PB | 33..295 | 44..314 | 630 | 48.6 | Plus |