Clone BS18108 Report

Search the DGRC for BS18108

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:181
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG4078-RA
Protein status:BS18108.pep: full length peptide match
Sequenced Size:2990

Clone Sequence Records

BS18108.complete Sequence

2990 bp assembled on 2009-12-07

GenBank Submission: KX805845

> BS18108.complete
GAAGTTATCAGTCGACATGCCGGAGAGCCTGATCGCCGGCATTCCGGTGC
ACTTTCCGTTCGAGCCGTACCCGGTTCAACGGGCGTACATGGAGAAGGTG
ATCCATTGTCTCCGCGATGGCACGAATGGAGTCCTGGAATCGCCAACCGG
CACGGGCAAGACCCTAAGCTTGCTGTGCTCATCCTTGGCCTGGATCCGCA
CCAGGCAATCGGAGCACCAAAAGCAGATGGTTAAGATGGAGAAGGCAGAT
TTTTCGGGTCTTGGAGGCGGAGCACCTGGGGGAGACCTGTCCGAGCTGGC
CAAGACCATGGGTCGTGCGAATAACTGGGGCGTGCCCAAGGTCATCTACG
CCTCGCGCACCCACTCCCAATTGACGCAGGCGATGCGGGAACTCAAGAGG
ACAGCGTACGCTAACATGAGATCCGTGGTTCTGGGCTCCCGCGATCAGCT
ATGCATTCATCCGGAGGTCATGCGGGAGCAGGGCAACTCCAACAAGACCA
ACATGTGCAAGCTACGGGTGCACTCCAAGACCTGTTCATTTCAAATGCGC
GTTGAGTCGCGAAAGGATCATCCCGATTTGCGCGGACCCACCATCATGGA
CATTGAGGACCTGGTCAAGGTGGGCCAGCGACTCAAGATCTGTCCCTACT
TCGCGTCTCGGGAGTTGGTTCCCCAGGCGGATATCACCTTCATGCCCTAC
AATTATCTACTCGATCCCAAGGCTCGCAAGGCCAACAAAATCGAACTGGG
CAACACTATTGTGATCCTGGATGAGGCCCACAACATCGAGAAGATCTGCG
AGGAGTCCGCTTCGGTGCAGATTAAGTCCTCTGATGTGGCCATGGCCATC
GAGGACGTCACGCATATCATGCAAGTCTTTGCGAGCGGCGAGTCGCAGGA
TATGGCTGGAGATGAGCCAAAGGACTTCACACTGGACGACCTTACACTGC
TCAAGGAGATGCTGCTCGAGCTCGAAAAGGCCATCGATGCCATCGTTGTG
GACAACGCCGTCGATGGAACTACCTTTCCCGCCTCCATGATGTACGAACT
GCTTGGCAAGGCGAATTTCACCTACGGCAACGTTGCAACGATAGTATCCC
TGCTGGACAAACTGGTGCAATACCTCCTAGTGGCCTCCCAGCAGATGAGC
ATCCGCAAGGGCGGCACCTTCACGTTGCTTAGCGATCTACTGACCATTGT
GTTTGCCAACAAGGAGGATGTGATGAGCAAGGTGTACGCAAGCTTCAAAG
TGCATGTCCTGGTGGAGGAGTCCAAGCAGGGACACGGTAAGCAGCAGGGT
GCTAAACAGCAGGGCGGTTGGCTTGGCAAGGGAACGATTGCAGCAGCGAC
TGGCTTAAGCAAGGTCGCAAAAATCATTAACTTCTGGTGCTTCAATCCTG
GCTTCGGAATGGAGCAACTGCTCAACACCCAAGTGCGCAGCGTAATCCTG
ACCAGCGGCACACTAGCTCCCCTCAAGCCGCTAATCGCCGAGCTTGCCAT
TCCGGTGGCCCAGCATCTGGAGAATCCGCACATCGTCGACCAGTCGCAGG
TTTATGTCAAGATCATCGGCACCGGACCCGATCGGCAGCAACTGATATCG
AACTATGCGAACCGTGATAATCCAAAGTACATCAGCTCCCTGGGACAGAC
GATTCTGAATGTAGCGCGTATAGTGCCCGACGGCCTCCTTGTCTTTTTCC
CATCGTATCCCATGTTGAACAAGTGCGTGGACGCGTGGCAGGCCAGTGGT
TTGTGGGCGGACATATCGTGCAAGAAACCGATTTTTCTGGAGCCGCGCAG
CAAGGACCAGTTCACCAGCACGATGGAAGAGTTCTACCAGGCGATACGCG
ACTCCAAGGGTGCCGTATTCATGGCTGTTTGTCGCGGCAAAGTCTCCGAA
GGTCTGGACTTTGCTGATCGCAATGGCCGCGCGGTGATTATTACTGGTCT
GCCATTCCCACCGCTAAAGGATCCCAAGGTGATACTGAAACGTCGCTACC
TGGAGGCGAATCGGACTCGTGAGAATCAGCTGTTAAGTGGGCAGGAATGG
TACAATCTAGATGCCACGAGGGCAGTCAATCAAGCCATCGGTCGTGTGAT
TCGGCATCGCAACGATTATGGTGCCATTCTGCTTTGCGACTCGCGATTTA
AGGACGCCTCACAGGTCCAGCAGCTATCCAAATGGATTCGGGGTCACCTG
GGCGACCGGCCACAGTGCTCACCCTTTGGTCCTATCGTCCGGGAACTGCG
TCAGTTCTTTAAGAACGCCGAAGCGAATATGAAACTACCGGATGAAAGGG
AAACCGATTCGCCTTTGGAAACCGTCTGCAAGACAGAGGATGAACCACTA
GCCGCCATTCCAAAAGTGAAACGGGAGCCTGGCTCCAATGCCACCTTCAA
ATCAGCCAATGAATCCGCAATCAAAGTGGAGATGGCCAATTCCATCAAGA
CATGGACACCCGCCGATTATGCGAGTGCCGCTGGACATAAATTGGGTGGT
GCGGCGCCGAATGCCATGGACTTTATGAGTCGACTGGACTCAAATGTCTC
GAGTATCGATTTCAACTGCTGCACAGATAGTAAAAGTGGCTCCTCTGGTC
TGGTGAAGATTCACAAGCGGGAGCGAAGCTCACCAACGGCGCCGGAATCC
TCCAGCCAGGTGACCAAAAAGCGATACAAGTTGGTGGAGAACATCAAGGT
GGAGCCAAGTAGTTCGCAGGCTAAGGAGGCACCCGAGGAAAGGGCCGCGT
TTCTCCGGGAGCTACGCAGCCTGGTCACCCAAGATCAATTCCGCCGCTTT
GGCAAGGCGCTGCTGGAGTACAAGAATGGCACCTATGAGAGCTTTCAGGC
CCTGATGGCCATACTCCTGGATGTCCTGTCCGCACCCAAAGTGCGCTACA
TGCTCGTCGGGATGCGGAAGTATCTAAAGAACGAGCACAAGGACGAGTTT
GATCGTAGGGTGGGCAATCTTTAAAAGCTTTCTAGACCAT

BS18108.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4078-RB 2958 CG4078-PB 1..2958 17..2974 14790 100 Plus
CG4078-RA 2958 CG4078-PA 1..2958 17..2974 14790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4078-RB 3603 CG4078-RB 123..3080 17..2974 14790 100 Plus
CG4078-RA 3308 CG4078-RA 123..3080 17..2974 14790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5747869..5748918 17..1066 5250 100 Plus
X 23542271 X 5749736..5750400 1614..2278 3325 100 Plus
X 23542271 X 5748994..5749541 1067..1614 2740 100 Plus
X 23542271 X 5751340..5751554 2760..2974 1075 100 Plus
X 23542271 X 5751063..5751273 2551..2761 1055 100 Plus
X 23542271 X 5750462..5750604 2279..2421 715 100 Plus
X 23542271 X 5750849..5750978 2422..2551 650 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:01:25 has no hits.

BS18108.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:35 Download gff for BS18108.complete
Subject Subject Range Query Range Percent Splice Strand
CG4078-RA 121..3076 17..2972 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:50 Download gff for BS18108.complete
Subject Subject Range Query Range Percent Splice Strand
CG4078-RA 123..3078 17..2972 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:15 Download gff for BS18108.complete
Subject Subject Range Query Range Percent Splice Strand
CG4078-RA 121..3076 17..2972 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:10 Download gff for BS18108.complete
Subject Subject Range Query Range Percent Splice Strand
CG4078-RA 123..3078 17..2972 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:10 Download gff for BS18108.complete
Subject Subject Range Query Range Percent Splice Strand
X 5750849..5750978 2422..2551 100 -> Plus
X 5751064..5751273 2552..2761 100 -> Plus
X 5751342..5751552 2762..2972 100   Plus
X 5747869..5748918 17..1066 100 -> Plus
X 5748994..5749541 1067..1614 100 -> Plus
X 5749737..5750400 1615..2278 100 -> Plus
X 5750462..5750604 2279..2421 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:50 Download gff for BS18108.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5641902..5642951 17..1066 100 -> Plus
arm_X 5643027..5643574 1067..1614 100 -> Plus
arm_X 5643770..5644433 1615..2278 100 -> Plus
arm_X 5644495..5644637 2279..2421 100 -> Plus
arm_X 5644882..5645011 2422..2551 100 -> Plus
arm_X 5645097..5645306 2552..2761 100 -> Plus
arm_X 5645375..5645585 2762..2972 100   Plus

BS18108.3prime Sequence

864 bp (777 high quality bases) assembled on 2007-06-06

> BS18108.3prime
ATGGTCTAGAAAGCTTTTAAAGATTGCCCACCCTACGATCAAACTCGTCC
TTGTGCTCGTTCTTTAGATACTTCCGCATCCCGACGAGCATGTAGCGCAC
TTTGGGTGCGGACAGGACATCCAGGAGTATGGCCATCAGGGCCTGAAAGC
TCTCATAGGTGCCATTCTTGTACTCCAGCAGCGCCTTGCCAAAGCGGCGG
AATTGATCTTGGGTGACCAGGCTGCGTAGCTCCCGGAGAAACGCGGCCCT
TTCCTCGGGTGCCTCCTTAGCCTGCGAACTACTTGGCTCCACCTTGATGT
TCTCCACCAACTTGTATCGCTTTTTGGTCACCTGGCTGGAGGATTCCGGC
GCCGTTGGTGAGCTTCGCTCCCGCTTGTGAATCTTCACCAGACCAGAGGA
GCCACTTTTACTATCTGTGCAGCAGTTGAAATCGATACTCGAGACATTTG
AGTCCAGTCGACTCATAAAGTCCATGGCATTCGGCGCCGCACCACCCAAT
TTATGTCCAGCGGCACTCGCATAATCGGCGGGTGTCCATGTCTTGATGGA
ATTGGCCATCTCCACTTTGATTGCGGATTCATTGGCTGATTTGAAGGTGG
CATTGGAGCCAGGCTCCCGTTTCACTTTTGGAATGGCGGCTAGTGGTTCA
TCCTCTGTCTTGCAGACGGTTTCCAAAGGCGAATCGGTTTCCCTTTCATC
CGGTAGTTTCATATTCGCTTCGGCGTTCTTAAAGAACTGACGCAGTTCCC
GGACGATAGGACCAAAGGGTGAGCACTGTGGCCGGTCGCCCAGGTGACCC
CGAATCCATTTGGATAGCTGCTGGACCTGTGAGGCGTCCTTTAATCGCGA
GTCGCAAAGCAGAA

BS18108.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4078-PA 2958 CG4078-RA 2111..2958 864..17 4215 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4078-RB 3603 CG4078-RB 2233..3080 864..17 4225 99.9 Minus
CG4078-RA 3308 CG4078-RA 2233..3080 864..17 4225 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5751340..5751554 231..17 1075 100 Minus
X 23542271 X 5751063..5751273 440..230 1055 100 Minus
X 23542271 X 5750249..5750400 864..713 745 99.3 Minus
X 23542271 X 5750462..5750604 712..570 715 100 Minus
X 23542271 X 5750849..5750978 569..440 650 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:39:27 has no hits.

BS18108.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:18 Download gff for BS18108.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4078-PA 2113..2958 17..862 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:21:03 Download gff for BS18108.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4078-RA 2233..3089 10..864 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:57 Download gff for BS18108.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4078-RA 2233..3089 10..864 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:57 Download gff for BS18108.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5750249..5750400 713..864 99 -> Minus
X 5750462..5750604 570..712 100 -> Minus
X 5750849..5750978 440..569 100 -> Minus
X 5751064..5751273 230..439 100 -> Minus
X 5751342..5751563 10..229 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:21:03 Download gff for BS18108.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5644282..5644433 713..864 99 -> Minus
arm_X 5644495..5644637 570..712 100 -> Minus
arm_X 5644882..5645011 440..569 100 -> Minus
arm_X 5645097..5645306 230..439 100 -> Minus
arm_X 5645375..5645596 10..229 98   Minus

BS18108.5prime Sequence

893 bp (787 high quality bases) assembled on 2007-06-06

> BS18108.5prime
GAAGTTATCAGTCGACATGCCGGAGAGCCTGATCGCCGGCATTCCGGTGC
ACTTTCCGTTCGAGCCGTACCCGGTTCAACGGGCGTACATGGAGAAGGTG
ATCCATTGTCTCCGCGATGGCACGAATGGAGTCCTGGAATCGCCAACCGG
CACGGGCAAGACCCTAAGCTTGCTGTGCTCATCCTTGGCCTGGATCCGCA
CCAGGCAATCGGAGCACCAAAAGCAGATGGTTAAGATGGAGAAGGCAGAT
TTTTCGGGTCTTGGAGGCGGAGCACCTGGGGGAGACCTGTCCGAGCTGGC
CAAGACCATGGGTCGTGCGAATAACTGGGGCGTGCCCAAGGTCATCTACG
CCTCGCGCACCCACTCCCAATTGACGCAGGCGATGCGGGAACTCAAGAGG
ACAGCGTACGCTAACATGAGATCCGTGGTTCTGGGCTCCCGCGATCAGCT
ATGCATTCATCCGGAGGTCATGCGGGAGCAGGGCAACTCCAACAAGACCA
ACATGTGCAAGCTACGGGTGCACTCCAAGACCTGTTCATTTCAAATGCGC
GTTGAGTCGCGAAAGGATCATCCCGATTTGCGCGGACCCACCATCATGGA
CATTGAGGACCTGGTCAAGGTGGGCCAGCGACTCAAGATCTGTCCCTACT
TCGCGTCTCGGGAGTTGGTTCCCCAGGCGGATATCACCTTCATGCCCTAC
AATTATCTACTCGATCCCAAGGCTCGCAAGGCCAACAAAATCGAACTGGG
CAACACTATTGTGATCCTGGATGAGGCCCACAACATCGAGAAGATCTGCG
AGGAGTCCGCTTCGGTGCAGATTAAGTCCTCTGATGTGGGCATGGCCATC
GAGGACGTCACGCATATCATGCAAGTCTTTGCGAGCGGGGAGT

BS18108.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4078-PA 2958 CG4078-RA 1..872 17..888 4335 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4078-RB 3603 CG4078-RB 123..999 17..893 4355 99.8 Plus
CG4078-RA 3308 CG4078-RA 123..999 17..893 4355 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5747869..5748745 17..893 4355 99.8 Plus
Blast to na_te.dros performed on 2015-02-13 07:16:52 has no hits.

BS18108.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:23 Download gff for BS18108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4078-PA 1..877 17..893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:08:01 Download gff for BS18108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4078-RA 123..999 17..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:48 Download gff for BS18108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4078-RA 123..999 17..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:26:48 Download gff for BS18108.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5747869..5748745 17..893 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:08:01 Download gff for BS18108.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5641902..5642778 17..893 99   Plus

BS18108.pep Sequence

Translation from 16 to 2973

> BS18108.pep
MPESLIAGIPVHFPFEPYPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTL
SLLCSSLAWIRTRQSEHQKQMVKMEKADFSGLGGGAPGGDLSELAKTMGR
ANNWGVPKVIYASRTHSQLTQAMRELKRTAYANMRSVVLGSRDQLCIHPE
VMREQGNSNKTNMCKLRVHSKTCSFQMRVESRKDHPDLRGPTIMDIEDLV
KVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELGNTIVI
LDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIMQVFASGESQDMAGDE
PKDFTLDDLTLLKEMLLELEKAIDAIVVDNAVDGTTFPASMMYELLGKAN
FTYGNVATIVSLLDKLVQYLLVASQQMSIRKGGTFTLLSDLLTIVFANKE
DVMSKVYASFKVHVLVEESKQGHGKQQGAKQQGGWLGKGTIAAATGLSKV
AKIINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQH
LENPHIVDQSQVYVKIIGTGPDRQQLISNYANRDNPKYISSLGQTILNVA
RIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISCKKPIFLEPRSKDQFT
STMEEFYQAIRDSKGAVFMAVCRGKVSEGLDFADRNGRAVIITGLPFPPL
KDPKVILKRRYLEANRTRENQLLSGQEWYNLDATRAVNQAIGRVIRHRND
YGAILLCDSRFKDASQVQQLSKWIRGHLGDRPQCSPFGPIVRELRQFFKN
AEANMKLPDERETDSPLETVCKTEDEPLAAIPKVKREPGSNATFKSANES
AIKVEMANSIKTWTPADYASAAGHKLGGAAPNAMDFMSRLDSNVSSIDFN
CCTDSKSGSSGLVKIHKRERSSPTAPESSSQVTKKRYKLVENIKVEPSSS
QAKEAPEERAAFLRELRSLVTQDQFRRFGKALLEYKNGTYESFQALMAIL
LDVLSAPKVRYMLVGMRKYLKNEHKDEFDRRVGNL*

BS18108.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4078-PB 985 CG4078-PB 1..985 1..985 5069 100 Plus
CG4078-PA 985 CG4078-PA 1..985 1..985 5069 100 Plus
Xpd-PA 769 CG9433-PA 5..703 6..730 537 24.9 Plus
CG11403-PA 861 CG11403-PA 582..859 472..749 346 30.6 Plus
CG11403-PA 861 CG11403-PA 189..437 108..351 217 27.8 Plus