Clone Sequence Records
BS18110.complete Sequence
992 bp assembled on 2010-02-09
GenBank Submission: KX803840
> BS18110.complete
GAAGTTATCAGTCGACATGCCGCGCACCAAGATACCAAAGAACTCCAAAC
GCAACCGCGAGGTGGCCAATCGCGAAGAGAAGGTGCGCCTGTACGAGCTG
AAAATGGATTCCCGCCTTATCAGCATCGATTCGCTGGAGACCAAGTTCCT
CTCCGCCGTGGACCACCAGGTGAAGACACTGCTCGGCCAGGTGCAGAAGG
AGCTGGCCAATCTGAAGATGCCCGAAGTGCTGCGCCTCTTCGAGGAACTG
GACCGCTTCAGCGACTTCAAGGCCAGCGATCAGACGCAGCTGCTCGCCTC
GATGTCCATGAGTGGCAGCGCCATCGAGGGCCACGCCCCCTCCGCCACTG
GAAGTCGCAATGACGAAGGCTACCTTACAGAGGACAGCAGCATCGGTGCC
AGCGGTGGGAGCATCCTGGCCGCCCACACAGGCTCCCTGCTGCGGTCCAC
GAAGGCCATGCGCACACCCGGACCACTGCACTCGGCGAGGGCTCGTCGAG
CGCGGCGCAGTCGTTCCGCCTGCGGGGATCTCAACATATTGCACTCGGCC
AAACCGCCGTCAATTTCGAGCAGCAGCAGCAGCAGCCGCAATTCGCGCAG
CAAACTGCGCACACCGATGGCCTCGCGTGCGAAGGCCTTCAGTGCCGACC
GCACTCCTTTGAAACAGAAGCAAATGCGCTCCGGATCGCCAACTACACCG
CCGATGGCATTCCTGCGCTATCCCAAGCCCGGCGAGGTGGCACTATCCAA
ATACGGCAGTCCCATGGTGGCTCAAGTAATGCCAGACAAGTTCGCCAATG
TGAACATACCCATTCGGAACGGAGTTCTTAGCTTGCGGCCCAAAAAACTG
GATGCCGACGAGGTGGAGTCAAATCTGTTGGAGAACCTGGACGAGGACAC
CCTTAACCAGATCAAAACGCTGCACGAGAACTTGCAGATGATTGTTAATA
AGGCCAGCCAGGCGGTGTTCAAGTAGAAGCTTTCTAGACCAT
BS18110.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:23:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-RB | 960 | CG4454-PB | 1..960 | 17..976 | 4800 | 100 | Plus |
borr-RA | 948 | CG4454-PA | 1..948 | 17..976 | 4585 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:23:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-RB | 1298 | CG4454-RB | 133..1092 | 17..976 | 4800 | 100 | Plus |
borr-RA | 1286 | CG4454-RA | 133..1080 | 17..976 | 4585 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:23:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9251942..9252352 | 777..367 | 2055 | 100 | Minus |
2L | 23513712 | 2L | 9252634..9252986 | 369..17 | 1765 | 100 | Minus |
2L | 23513712 | 2L | 9251678..9251876 | 976..778 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:23:06 has no hits.
BS18110.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:54 Download gff for
BS18110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Borr-RB | 1..960 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:37 Download gff for
BS18110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RB | 131..1090 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:04 Download gff for
BS18110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RB | 133..1092 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:09 Download gff for
BS18110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Borr-RB | 131..1090 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:17 Download gff for
BS18110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RB | 133..1092 | 17..976 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:17 Download gff for
BS18110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9251678..9251876 | 778..976 | 100 | <- | Minus |
2L | 9251942..9252350 | 369..777 | 100 | <- | Minus |
2L | 9252635..9252986 | 17..368 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:04 Download gff for
BS18110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9251678..9251876 | 778..976 | 100 | <- | Minus |
arm_2L | 9251942..9252350 | 369..777 | 100 | <- | Minus |
arm_2L | 9252635..9252986 | 17..368 | 100 | | Minus |
BS18110.3prime Sequence
888 bp (755 high quality bases) assembled on 2007-06-06
> BS18110.3prime
TCCCTTTAGGGGCGCGCCAAACGAATGGTCTAGAAAGCTTCTACTTGAAC
ACCGCCTGGCTGGCCTTATTAACAATCATCTGCAAGTTCTCGTGCAGCGT
TTTGATCTGGTTAAGGGTGTCCTCGTCCAGGTTCTCCAACAGATTTGACT
CCACCTCGTCGGCATCCAGTTTTTTGGGCCGCAAGCTAAGAACTCCGTTC
CGAATGGGTATGTTCACATTGGCGAACTTGTCTGGCATTACTTGAGCCAC
CATGGGACTGCCGTATTTGGATAGTGCCACCTCGCCGGGCTTGGGATAGC
GCAGGAATGCCATCGGCGGTGTAGTTGGCGATCCGGAGCGCATTTGCTTC
TGTTTCAAAGGAGTGCGGTCGGCACTGAAGGCCTTCGCACGCGAGGCCAT
CGGTGTGCGCAGTTTGCTGCGCGAATTGCGGCTGCTGCTGCTGCTGCTCG
AAATTGACGGCGGTTTGGCCGAGTGCAATATGTTGAGATCCCCGCAGGCG
GAACGACTGCGCCGCGCTCGACGAGCCCTCGCCGAGTGCAGTGGTCCGGG
TGTGCGCATGGCCTTCGTGGACCGCAGCAGGGAGCCTGTGTGGGCGGCCA
GGATGCTCCCACCGCTGGCACCGATGCTGCTGTCCTCTGTAAGGTAGCCT
TCGTCATTGCGACTTCCAGTGGCGGAGGGGGCGTGGCCCTCGATGGCGCT
GCCACTCATGGACATCGAGGCGAGCAGCTGCGTCTGATCGCTGGCCTTGA
AGTCGCTGAAGCGGTCCAGTTCCTCGAAGAGGCGCAGCACTTCGGGCATC
TTCAGATTGGCCAGCTCCTTCTGCACCTGGCCGAGCATTGTCTTCACCTG
GTGGTCCACGGCGGAGAGGAACTTGGTCTCCAGCGAAT
BS18110.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4454-PB | 960 | Borr-RB | 113..960 | 888..41 | 4215 | 99.8 | Minus |
CG4454-PA | 948 | Borr-RA | 351..948 | 638..41 | 2990 | 100 | Minus |
CG4454-PA | 948 | Borr-RA | 113..352 | 888..649 | 1175 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-RB | 1298 | CG4454-RB | 245..1092 | 888..41 | 4225 | 99.9 | Minus |
borr-RA | 1286 | CG4454-RA | 245..1080 | 888..41 | 4035 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9251942..9252352 | 240..650 | 2055 | 100 | Plus |
2L | 23513712 | 2L | 9252634..9252874 | 648..888 | 1190 | 99.6 | Plus |
2L | 23513712 | 2L | 9251678..9251876 | 41..239 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:21:13 has no hits.
BS18110.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:33 Download gff for
BS18110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4454-PB | 113..960 | 41..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:38 Download gff for
BS18110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RB | 245..1097 | 33..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:15 Download gff for
BS18110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RB | 245..1097 | 33..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:15 Download gff for
BS18110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9252635..9252874 | 649..888 | 99 | | Plus |
2L | 9251668..9251876 | 33..239 | 98 | <- | Plus |
2L | 9251942..9252350 | 240..648 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:38 Download gff for
BS18110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9251668..9251876 | 33..239 | 98 | <- | Plus |
arm_2L | 9251942..9252350 | 240..648 | 100 | <- | Plus |
arm_2L | 9252635..9252874 | 649..888 | 99 | | Plus |
BS18110.5prime Sequence
722 bp (583 high quality bases) assembled on 2007-06-06
> BS18110.5prime
GAAGTTATCAGTCGACATGCCGCGCACCAAGATACCAAAGAACTCCAAAC
GCAACCGCGAGGTGGCCAATCGCGAAGAGAAGGTGCGCCTGTACGAGCTG
AAAATGGATTCCCGCCTTATCAGCATCGATTCGCTGGAGACCAAGTTCCT
CTCCGCCGTGGACCACCAGGTGAAGACACTGCTCGGCCAGGTGCAGAAGG
AGCTGGCCAATCTGAAGATGCCCGAAGTGCTGCGCCTCTTCGAGGAACTG
GACCGCTTCAGCGACTTCAAGGCCAGCGATCAGACGCAGCTGCTCGCCTC
GATGTCCATGAGTGGCAGCGCCATCGAGGGCCACGCCCCCTCCGCCACTG
GAAGTCGCAATGACGAAGGCTACCTTACAGAGGACAGCAGCATCGGTGCC
AGCGGTGGGAGCATCCTGGCCGCCCACACAGGCTCCCTGCTGCGGTCCAC
GAAGGCCATGCGCACACCCGGACCACTGCACTCGGCGAGGGCTCGTCGAG
CGCGGCGCAGTCGTTCCGCCTGCGGGGATCTCAACATATTGCACTCGGCC
AAACCGCCGTCAATTTCGAGCAGCAGCAGCAGCAGCCGCAATTCGCGCAG
CAAACTGCGCACACCGATGGCCTCGCGTGCGAAGGCCTTCAGTGCCGACC
GCACTCCTTTGAAACAGAAGCAAATGCGCTCCGGATCGCCAACTACACCG
CCGATGGCATTCCTGCGCTATC
BS18110.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4454-PB | 960 | Borr-RB | 1..706 | 17..722 | 3530 | 100 | Plus |
CG4454-PA | 948 | Borr-RA | 1..352 | 17..368 | 1760 | 100 | Plus |
CG4454-PA | 948 | Borr-RA | 351..694 | 379..722 | 1720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-RB | 1298 | CG4454-RB | 133..838 | 17..722 | 3530 | 100 | Plus |
borr-RA | 1286 | CG4454-RA | 133..826 | 17..722 | 3340 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9251997..9252352 | 722..367 | 1780 | 100 | Minus |
2L | 23513712 | 2L | 9252634..9252986 | 369..17 | 1765 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:36:31 has no hits.
BS18110.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:38 Download gff for
BS18110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4454-PB | 1..706 | 17..722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:43 Download gff for
BS18110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RB | 133..838 | 17..722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:25:21 Download gff for
BS18110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RB | 133..838 | 17..722 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:25:21 Download gff for
BS18110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9251997..9252350 | 369..722 | 100 | <- | Minus |
2L | 9252635..9252986 | 17..368 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:43 Download gff for
BS18110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9251997..9252350 | 369..722 | 100 | <- | Minus |
arm_2L | 9252635..9252986 | 17..368 | 100 | | Minus |
BS18110.pep Sequence
Translation from 16 to 975
> BS18110.pep
MPRTKIPKNSKRNREVANREEKVRLYELKMDSRLISIDSLETKFLSAVDH
QVKTLLGQVQKELANLKMPEVLRLFEELDRFSDFKASDQTQLLASMSMSG
SAIEGHAPSATGSRNDEGYLTEDSSIGASGGSILAAHTGSLLRSTKAMRT
PGPLHSARARRARRSRSACGDLNILHSAKPPSISSSSSSSRNSRSKLRTP
MASRAKAFSADRTPLKQKQMRSGSPTTPPMAFLRYPKPGEVALSKYGSPM
VAQVMPDKFANVNIPIRNGVLSLRPKKLDADEVESNLLENLDEDTLNQIK
TLHENLQMIVNKASQAVFK*
BS18110.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-PB | 319 | CG4454-PB | 1..319 | 1..319 | 1586 | 100 | Plus |
borr-PA | 315 | CG4454-PA | 1..315 | 1..319 | 1549 | 98.7 | Plus |
aust-PB | 216 | CG17009-PB | 88..210 | 179..315 | 236 | 41.4 | Plus |
aust-PA | 216 | CG17009-PA | 88..210 | 179..315 | 236 | 41.4 | Plus |
aust-PB | 216 | CG17009-PB | 1..98 | 1..99 | 178 | 41 | Plus |
aust-PA | 216 | CG17009-PA | 1..98 | 1..99 | 178 | 41 | Plus |