Clone BS18110 Report

Search the DGRC for BS18110

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:181
Well:10
Vector:pDNR-Dual
Associated Gene/Transcriptborr-RB
Protein status:BS18110.pep: full length peptide match
Sequenced Size:992

Clone Sequence Records

BS18110.complete Sequence

992 bp assembled on 2010-02-09

GenBank Submission: KX803840

> BS18110.complete
GAAGTTATCAGTCGACATGCCGCGCACCAAGATACCAAAGAACTCCAAAC
GCAACCGCGAGGTGGCCAATCGCGAAGAGAAGGTGCGCCTGTACGAGCTG
AAAATGGATTCCCGCCTTATCAGCATCGATTCGCTGGAGACCAAGTTCCT
CTCCGCCGTGGACCACCAGGTGAAGACACTGCTCGGCCAGGTGCAGAAGG
AGCTGGCCAATCTGAAGATGCCCGAAGTGCTGCGCCTCTTCGAGGAACTG
GACCGCTTCAGCGACTTCAAGGCCAGCGATCAGACGCAGCTGCTCGCCTC
GATGTCCATGAGTGGCAGCGCCATCGAGGGCCACGCCCCCTCCGCCACTG
GAAGTCGCAATGACGAAGGCTACCTTACAGAGGACAGCAGCATCGGTGCC
AGCGGTGGGAGCATCCTGGCCGCCCACACAGGCTCCCTGCTGCGGTCCAC
GAAGGCCATGCGCACACCCGGACCACTGCACTCGGCGAGGGCTCGTCGAG
CGCGGCGCAGTCGTTCCGCCTGCGGGGATCTCAACATATTGCACTCGGCC
AAACCGCCGTCAATTTCGAGCAGCAGCAGCAGCAGCCGCAATTCGCGCAG
CAAACTGCGCACACCGATGGCCTCGCGTGCGAAGGCCTTCAGTGCCGACC
GCACTCCTTTGAAACAGAAGCAAATGCGCTCCGGATCGCCAACTACACCG
CCGATGGCATTCCTGCGCTATCCCAAGCCCGGCGAGGTGGCACTATCCAA
ATACGGCAGTCCCATGGTGGCTCAAGTAATGCCAGACAAGTTCGCCAATG
TGAACATACCCATTCGGAACGGAGTTCTTAGCTTGCGGCCCAAAAAACTG
GATGCCGACGAGGTGGAGTCAAATCTGTTGGAGAACCTGGACGAGGACAC
CCTTAACCAGATCAAAACGCTGCACGAGAACTTGCAGATGATTGTTAATA
AGGCCAGCCAGGCGGTGTTCAAGTAGAAGCTTTCTAGACCAT

BS18110.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
borr-RB 960 CG4454-PB 1..960 17..976 4800 100 Plus
borr-RA 948 CG4454-PA 1..948 17..976 4585 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
borr-RB 1298 CG4454-RB 133..1092 17..976 4800 100 Plus
borr-RA 1286 CG4454-RA 133..1080 17..976 4585 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9251942..9252352 777..367 2055 100 Minus
2L 23513712 2L 9252634..9252986 369..17 1765 100 Minus
2L 23513712 2L 9251678..9251876 976..778 995 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:23:06 has no hits.

BS18110.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:54 Download gff for BS18110.complete
Subject Subject Range Query Range Percent Splice Strand
Borr-RB 1..960 17..976 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:37 Download gff for BS18110.complete
Subject Subject Range Query Range Percent Splice Strand
borr-RB 131..1090 17..976 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:04 Download gff for BS18110.complete
Subject Subject Range Query Range Percent Splice Strand
borr-RB 133..1092 17..976 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:09 Download gff for BS18110.complete
Subject Subject Range Query Range Percent Splice Strand
Borr-RB 131..1090 17..976 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:17 Download gff for BS18110.complete
Subject Subject Range Query Range Percent Splice Strand
borr-RB 133..1092 17..976 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:17 Download gff for BS18110.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9251678..9251876 778..976 100 <- Minus
2L 9251942..9252350 369..777 100 <- Minus
2L 9252635..9252986 17..368 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:04 Download gff for BS18110.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9251678..9251876 778..976 100 <- Minus
arm_2L 9251942..9252350 369..777 100 <- Minus
arm_2L 9252635..9252986 17..368 100   Minus

BS18110.3prime Sequence

888 bp (755 high quality bases) assembled on 2007-06-06

> BS18110.3prime
TCCCTTTAGGGGCGCGCCAAACGAATGGTCTAGAAAGCTTCTACTTGAAC
ACCGCCTGGCTGGCCTTATTAACAATCATCTGCAAGTTCTCGTGCAGCGT
TTTGATCTGGTTAAGGGTGTCCTCGTCCAGGTTCTCCAACAGATTTGACT
CCACCTCGTCGGCATCCAGTTTTTTGGGCCGCAAGCTAAGAACTCCGTTC
CGAATGGGTATGTTCACATTGGCGAACTTGTCTGGCATTACTTGAGCCAC
CATGGGACTGCCGTATTTGGATAGTGCCACCTCGCCGGGCTTGGGATAGC
GCAGGAATGCCATCGGCGGTGTAGTTGGCGATCCGGAGCGCATTTGCTTC
TGTTTCAAAGGAGTGCGGTCGGCACTGAAGGCCTTCGCACGCGAGGCCAT
CGGTGTGCGCAGTTTGCTGCGCGAATTGCGGCTGCTGCTGCTGCTGCTCG
AAATTGACGGCGGTTTGGCCGAGTGCAATATGTTGAGATCCCCGCAGGCG
GAACGACTGCGCCGCGCTCGACGAGCCCTCGCCGAGTGCAGTGGTCCGGG
TGTGCGCATGGCCTTCGTGGACCGCAGCAGGGAGCCTGTGTGGGCGGCCA
GGATGCTCCCACCGCTGGCACCGATGCTGCTGTCCTCTGTAAGGTAGCCT
TCGTCATTGCGACTTCCAGTGGCGGAGGGGGCGTGGCCCTCGATGGCGCT
GCCACTCATGGACATCGAGGCGAGCAGCTGCGTCTGATCGCTGGCCTTGA
AGTCGCTGAAGCGGTCCAGTTCCTCGAAGAGGCGCAGCACTTCGGGCATC
TTCAGATTGGCCAGCTCCTTCTGCACCTGGCCGAGCATTGTCTTCACCTG
GTGGTCCACGGCGGAGAGGAACTTGGTCTCCAGCGAAT

BS18110.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4454-PB 960 Borr-RB 113..960 888..41 4215 99.8 Minus
CG4454-PA 948 Borr-RA 351..948 638..41 2990 100 Minus
CG4454-PA 948 Borr-RA 113..352 888..649 1175 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
borr-RB 1298 CG4454-RB 245..1092 888..41 4225 99.9 Minus
borr-RA 1286 CG4454-RA 245..1080 888..41 4035 98.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9251942..9252352 240..650 2055 100 Plus
2L 23513712 2L 9252634..9252874 648..888 1190 99.6 Plus
2L 23513712 2L 9251678..9251876 41..239 995 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:21:13 has no hits.

BS18110.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:33 Download gff for BS18110.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4454-PB 113..960 41..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:38 Download gff for BS18110.3prime
Subject Subject Range Query Range Percent Splice Strand
borr-RB 245..1097 33..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:15 Download gff for BS18110.3prime
Subject Subject Range Query Range Percent Splice Strand
borr-RB 245..1097 33..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:15 Download gff for BS18110.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9252635..9252874 649..888 99   Plus
2L 9251668..9251876 33..239 98 <- Plus
2L 9251942..9252350 240..648 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:38 Download gff for BS18110.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9251668..9251876 33..239 98 <- Plus
arm_2L 9251942..9252350 240..648 100 <- Plus
arm_2L 9252635..9252874 649..888 99   Plus

BS18110.5prime Sequence

722 bp (583 high quality bases) assembled on 2007-06-06

> BS18110.5prime
GAAGTTATCAGTCGACATGCCGCGCACCAAGATACCAAAGAACTCCAAAC
GCAACCGCGAGGTGGCCAATCGCGAAGAGAAGGTGCGCCTGTACGAGCTG
AAAATGGATTCCCGCCTTATCAGCATCGATTCGCTGGAGACCAAGTTCCT
CTCCGCCGTGGACCACCAGGTGAAGACACTGCTCGGCCAGGTGCAGAAGG
AGCTGGCCAATCTGAAGATGCCCGAAGTGCTGCGCCTCTTCGAGGAACTG
GACCGCTTCAGCGACTTCAAGGCCAGCGATCAGACGCAGCTGCTCGCCTC
GATGTCCATGAGTGGCAGCGCCATCGAGGGCCACGCCCCCTCCGCCACTG
GAAGTCGCAATGACGAAGGCTACCTTACAGAGGACAGCAGCATCGGTGCC
AGCGGTGGGAGCATCCTGGCCGCCCACACAGGCTCCCTGCTGCGGTCCAC
GAAGGCCATGCGCACACCCGGACCACTGCACTCGGCGAGGGCTCGTCGAG
CGCGGCGCAGTCGTTCCGCCTGCGGGGATCTCAACATATTGCACTCGGCC
AAACCGCCGTCAATTTCGAGCAGCAGCAGCAGCAGCCGCAATTCGCGCAG
CAAACTGCGCACACCGATGGCCTCGCGTGCGAAGGCCTTCAGTGCCGACC
GCACTCCTTTGAAACAGAAGCAAATGCGCTCCGGATCGCCAACTACACCG
CCGATGGCATTCCTGCGCTATC

BS18110.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4454-PB 960 Borr-RB 1..706 17..722 3530 100 Plus
CG4454-PA 948 Borr-RA 1..352 17..368 1760 100 Plus
CG4454-PA 948 Borr-RA 351..694 379..722 1720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
borr-RB 1298 CG4454-RB 133..838 17..722 3530 100 Plus
borr-RA 1286 CG4454-RA 133..826 17..722 3340 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9251997..9252352 722..367 1780 100 Minus
2L 23513712 2L 9252634..9252986 369..17 1765 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:36:31 has no hits.

BS18110.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:38 Download gff for BS18110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4454-PB 1..706 17..722 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:43 Download gff for BS18110.5prime
Subject Subject Range Query Range Percent Splice Strand
borr-RB 133..838 17..722 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:25:21 Download gff for BS18110.5prime
Subject Subject Range Query Range Percent Splice Strand
borr-RB 133..838 17..722 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:25:21 Download gff for BS18110.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9251997..9252350 369..722 100 <- Minus
2L 9252635..9252986 17..368 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:43 Download gff for BS18110.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9251997..9252350 369..722 100 <- Minus
arm_2L 9252635..9252986 17..368 100   Minus

BS18110.pep Sequence

Translation from 16 to 975

> BS18110.pep
MPRTKIPKNSKRNREVANREEKVRLYELKMDSRLISIDSLETKFLSAVDH
QVKTLLGQVQKELANLKMPEVLRLFEELDRFSDFKASDQTQLLASMSMSG
SAIEGHAPSATGSRNDEGYLTEDSSIGASGGSILAAHTGSLLRSTKAMRT
PGPLHSARARRARRSRSACGDLNILHSAKPPSISSSSSSSRNSRSKLRTP
MASRAKAFSADRTPLKQKQMRSGSPTTPPMAFLRYPKPGEVALSKYGSPM
VAQVMPDKFANVNIPIRNGVLSLRPKKLDADEVESNLLENLDEDTLNQIK
TLHENLQMIVNKASQAVFK*

BS18110.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
borr-PB 319 CG4454-PB 1..319 1..319 1586 100 Plus
borr-PA 315 CG4454-PA 1..315 1..319 1549 98.7 Plus
aust-PB 216 CG17009-PB 88..210 179..315 236 41.4 Plus
aust-PA 216 CG17009-PA 88..210 179..315 236 41.4 Plus
aust-PB 216 CG17009-PB 1..98 1..99 178 41 Plus
aust-PA 216 CG17009-PA 1..98 1..99 178 41 Plus