Clone Sequence Records
BS18112.3prime Sequence
638 bp (516 high quality bases) assembled on 2007-06-06
> BS18112.3prime
AAGGACAAGAAAGCTTCCCCCTTTCGGGGACCGGNATCATCCGGCTGGGG
CCAGCGATGCAGGGATAGCCCCCAGCGGCAGGATGAACTCCACCGCCACC
AGGAGGAGGTCGCGACATGTACTCTTCATCGGAGAAGGTCTTTTGGTATT
CGCGCTCCTTACGCCCTAACGCCGAATGTCCTTTTAGCATCTCCCGAATC
CTATGACGGCAGGTGTAGAGAACCAGGGCCAAAGTGGTTATTAGAGCGGC
ACAGGCCACCACCAGGATCCCGATGATCGCCTGCTTACTGGCGGCTCCAT
GGGCACAGCCTAAAAGTGGTTCTGCCAAATGGGCCAGTGGCAAGTCCCTC
ATAGCCGTTGGATAGGCACAGATGACGGGCGCATACTGTCCACTGGCATT
CCTGCTGACCAGCAAATGGCGCATCCATAGTAGTCTGCAGTCACATTCAA
ATGGATTCTCCGAGAGATCAAGGGTTTGTAGATCAGCCCAGGGCACTAAA
CCTTCATCCAGGCTGCTTCAATTGATTGGCCTTCAGCACCACTGTGCTCA
GATGGGGCAAGCCACCCAAGGCGATGGAGGATAATTCGTTCAACTGCTTG
TTACTGGAGAAGGTAAGGTGCTCCAGGTTTGTGTTTCC
BS18112.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11282-PA | 1623 | caps-RA | 1123..1611 | 517..29 | 2276 | 98.5 | Minus |
CG11282-PB | 1623 | caps-RB | 1123..1611 | 517..29 | 2276 | 98.5 | Minus |
CG11282-PC | 2247 | caps-RC | 1123..1551 | 517..89 | 2070 | 99.3 | Minus |
CG11282-PA | 1623 | caps-RA | 1003..1123 | 638..518 | 555 | 98.3 | Minus |
CG11282-PB | 1623 | caps-RB | 1003..1123 | 638..518 | 555 | 98.3 | Minus |
CG11282-PC | 2247 | caps-RC | 1003..1123 | 638..518 | 555 | 98.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
caps-RE | 4841 | CG11282-RE | 1890..2503 | 638..24 | 2904 | 98.2 | Minus |
caps-RD | 4841 | CG11282-RD | 1890..2503 | 638..24 | 2904 | 98.2 | Minus |
caps-RB | 4628 | CG11282-RB | 1677..2290 | 638..24 | 2904 | 98.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13276691..13277304 | 638..24 | 2879 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:34:06 has no hits.
BS18112.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:53 Download gff for
BS18112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11282-PB | 1003..1616 | 24..638 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:04:16 Download gff for
BS18112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caps-RA | 1890..2503 | 24..638 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:27 Download gff for
BS18112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caps-RB | 1677..2290 | 24..638 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:27 Download gff for
BS18112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13276691..13277304 | 24..638 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:04:16 Download gff for
BS18112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13269791..13270404 | 24..638 | 98 | | Minus |
BS18112.5prime Sequence
738 bp (673 high quality bases) assembled on 2007-06-06
> BS18112.5prime
GAAGTTATCACTTTACATGAGCAGACGACGGGCAATTACCATGTCGTTGG
CTCCCCATCTTGGCCAGGCTTTTAGCCTCTGCCTGTGCCTGTGCCTGTGC
CTGGTTTTGGCCACATTGCCAGTGGCCCTGGGATTGGCCAACTGCCCGAA
TGGCTGCGAGTGCGACGACGACACCCTGATGGTCAATTGCGGCGAGGGCA
CGCTGGACGTCCTGCCCATCGCCCTGAATCCCGCCATCCAGCGACTGGTG
ATCAAGAACAACAAACTGAAGACCATCGACTCATCCATGCAGTTCTATGC
GCAGCTCACTTTCCTTGATCTGTCATTCAATGACATGCTCACCATACCGG
AACGATCGTTTGCGTATCACGCCAAATTGCAGGAGCTGCATCTGGACCAC
AATAAGATTGGCCAGGTGTCGAACAAGACCTTCCTCGGACTGTCGACCAT
CAGTGTTTTAAATCTGAGAGGCAACTTGATTGCCGAACTAGAGTACCGCA
CTTTTTCGCCTATGGTCAAGCTCGCTGAGCTTAATCTCGGCCAGAATCGC
ATCAGCCACATCGATCCACATGCCCTGGATGGCTTGGACAACCTGAGGGT
GCTCTATCTGGATGATAATACACTGACCACAGTGCCGGGAGAACTAACCT
TCCAGGCACTCCACTCCCTGGCAGAGCTATACTTGGGCACCAATTCCTTT
ATGACAATTCCCGGAGGAGCTTTCCAGGATCTCAAAGG
BS18112.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11282-PC | 2247 | caps-RC | 1..722 | 17..738 | 3610 | 100 | Plus |
CG11282-PA | 1623 | caps-RA | 1..722 | 17..738 | 3610 | 100 | Plus |
CG11282-PB | 1623 | caps-RB | 1..722 | 17..738 | 3610 | 100 | Plus |
CG11280-PA | 2214 | trn-RA | 136..209 | 191..264 | 145 | 87.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:31:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
caps-RE | 4841 | CG11282-RE | 888..1609 | 17..738 | 3610 | 100 | Plus |
caps-RD | 4841 | CG11282-RD | 888..1609 | 17..738 | 3610 | 100 | Plus |
caps-RB | 4628 | CG11282-RB | 675..1396 | 17..738 | 3610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13275689..13276410 | 17..738 | 3610 | 100 | Plus |
3L | 28110227 | 3L | 13115372..13115795 | 130..553 | 545 | 75.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:31:11 has no hits.
BS18112.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:58 Download gff for
BS18112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11282-PB | 1..722 | 17..738 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:52 Download gff for
BS18112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caps-RA | 886..1609 | 14..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:07 Download gff for
BS18112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caps-RB | 673..1396 | 14..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:07 Download gff for
BS18112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13275687..13276410 | 14..738 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:52 Download gff for
BS18112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13268787..13269510 | 14..738 | 99 | | Plus |
BS18112.complete Sequence
1655 bp assembled on 2010-01-09
GenBank Submission: KX802009
> BS18112.complete
GAAGTTATCAGTCGACATGAGCAGACGACGGGCAATTACCATGTCGTTGG
CTCCCCATCTTGGCCAGGCTTTTAGCCTCTGCCTGTGCCTGTGCCTGTGC
CTGGTTTTGGCCACATTGCCAGTGGCCCTGGGATTGGCCAACTGCCCGAA
TGGCTGCGAGTGCGACGACGACACCCTGATGGTCAATTGCGGCGAGGGCA
CGCTGGACGTCCTGCCCATCGCCCTGAATCCCGCCATCCAGCGACTGGTG
ATCAAGAACAACAAACTGAAGACCATCGACTCATCCATGCAGTTCTATGC
GCAGCTCACTTTCCTTGATCTGTCATTCAATGACATGCTCACCATACCGG
AACGATCGTTTGCGTATCACGCCAAATTGCAGGAGCTGCATCTGGACCAC
AATAAGATTGGCCAGGTGTCGAACAAGACCTTCCTCGGACTGTCGACCAT
CAGTGTTTTAAATCTGAGAGGCAACTTGATTGCCGAACTAGAGTACCGCA
CTTTTTCGCCTATGGTCAAGCTCGCTGAGCTTAATCTCGGCCAGAATCGC
ATCAGCCACATCGATCCACATGCCCTGGATGGCTTGGACAACCTGAGGGT
GCTCTATCTGGATGATAATACACTGACCACAGTGCCGGGAGAACTAACCT
TCCAGGCACTCCACTCCCTGGCAGAGCTATACTTGGGCACCAATTCCTTT
ATGACAATTCCCGGAGGAGCTTTCCAGGATCTCAAAGGATTAACCAGATT
GGATCTGCGCGGAGCTGGCTTGCACAACATCTCGGGAGATGCTCTCAAGG
GTCTGGTGTCCCTTCGCTTTTTGGATCTGTCAGATAATCGCCTCCCTGCG
ATACCCACAGCAGCTTTTCAGCGATTGGGACGCCTGGAACAGCTAAACAT
TGGCCAGAATGACTTTGAGGTGATCTCCTCGGGCGCCTTTTCGGGTCTTC
GGGAGCTGAGGCACTTGGAACTGACAGGTGCCCAGCGACTGAGACGCGTG
GAAAGCGGTGCCTTCAGTGGAAACACAAACCTGGAGCACCTTAACCTCTC
CAGTAACAAGCAGTTGAACGAATTATCCTCCATCGCCTTGGGTGGCTTGC
CCCATCTGAGCACAGTGGTGCTGAAGGCCAATCAATTGAGCAGCCTGGAT
GAAGGTTTAGTGCCCTGGGCTGATCTACAAACCCTTGATCTCTCGGAGAA
TCCATTTGAATGTGACTGCAGACTACTATGGCTGCGCCATTTGCTGGTCA
GCAGGAATGCCAGTGGACAGTATGCGCCCGTCATCTGTGCCTATCCAACG
GCTCTGAGGGACTTGCCACTGGCCCATTTGGCAGAACCACTTTTAGGCTG
TGCCCATGGAGCCGCCAGTAAGCAGGCGATCATCGGGATCCTGGTGGTGG
CCTGTGCCGCTCTAATAACCACTTTGGCCCTGGTTCTCTACACCTGCCGT
CATAGGATTCGGGAGATGCTAAAAGGACATTCGGCGTTAGGGCGTAAGGA
GCGCGAATACCAAAAGACCTTCTCCGATGAAGAGTACATGTCGCGACCAC
CTCCTGGTGGCGGTGGAGTTCATCCTGCCGCTGGGGGCTATCCCTACATC
GCTGGCAACAGCCGGATGATACCGGTCACCGAGCTTTAGAAGCTTTCTAG
ACCAT
BS18112.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
caps-RE | 2436 | CG11282-PE | 1..1623 | 17..1639 | 8115 | 100 | Plus |
caps-RD | 2343 | CG11282-PD | 1..1623 | 17..1639 | 8115 | 100 | Plus |
caps-RB | 1623 | CG11282-PB | 1..1623 | 17..1639 | 8115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
caps-RE | 4841 | CG11282-RE | 888..2510 | 17..1639 | 8115 | 100 | Plus |
caps-RD | 4841 | CG11282-RD | 888..2510 | 17..1639 | 8115 | 100 | Plus |
caps-RB | 4628 | CG11282-RB | 675..2297 | 17..1639 | 8115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13275689..13277311 | 17..1639 | 8115 | 100 | Plus |
3L | 28110227 | 3L | 13115372..13115795 | 130..553 | 545 | 75.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:54:47 has no hits.
BS18112.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:57 Download gff for
BS18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caps-RB | 678..2300 | 17..1639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:12 Download gff for
BS18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caps-RA | 888..2510 | 17..1639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:11 Download gff for
BS18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caps-RB | 678..2300 | 17..1639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:34 Download gff for
BS18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caps-RB | 675..2297 | 17..1639 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:34 Download gff for
BS18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13275689..13277311 | 17..1639 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:12 Download gff for
BS18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13268789..13270411 | 17..1639 | 100 | | Plus |
BS18112.pep Sequence
Translation from 16 to 1638
> BS18112.pep
MSRRRAITMSLAPHLGQAFSLCLCLCLCLVLATLPVALGLANCPNGCECD
DDTLMVNCGEGTLDVLPIALNPAIQRLVIKNNKLKTIDSSMQFYAQLTFL
DLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLSTISVLNL
RGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDD
NTLTTVPGELTFQALHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGA
GLHNISGDALKGLVSLRFLDLSDNRLPAIPTAAFQRLGRLEQLNIGQNDF
EVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNTNLEHLNLSSNKQL
NELSSIALGGLPHLSTVVLKANQLSSLDEGLVPWADLQTLDLSENPFECD
CRLLWLRHLLVSRNASGQYAPVICAYPTALRDLPLAHLAEPLLGCAHGAA
SKQAIIGILVVACAALITTLALVLYTCRHRIREMLKGHSALGRKEREYQK
TFSDEEYMSRPPPGGGGVHPAAGGYPYIAGNSRMIPVTEL*
BS18112.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:44:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
caps-PE | 811 | CG11282-PE | 1..540 | 1..540 | 2778 | 100 | Plus |
caps-PD | 780 | CG11282-PD | 1..540 | 1..540 | 2778 | 100 | Plus |
caps-PB | 540 | CG11282-PB | 1..540 | 1..540 | 2778 | 100 | Plus |
caps-PA | 540 | CG11282-PA | 1..540 | 1..540 | 2778 | 100 | Plus |
trn-PA | 737 | CG11280-PA | 15..513 | 30..519 | 1600 | 63.7 | Plus |