Clone BS18112 Report

Search the DGRC for BS18112

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:181
Well:12
Vector:pDNR-Dual
Associated Gene/Transcriptcaps-RA
Protein status:BS18112.pep: full length peptide match
Sequenced Size:1655

Clone Sequence Records

BS18112.3prime Sequence

638 bp (516 high quality bases) assembled on 2007-06-06

> BS18112.3prime
AAGGACAAGAAAGCTTCCCCCTTTCGGGGACCGGNATCATCCGGCTGGGG
CCAGCGATGCAGGGATAGCCCCCAGCGGCAGGATGAACTCCACCGCCACC
AGGAGGAGGTCGCGACATGTACTCTTCATCGGAGAAGGTCTTTTGGTATT
CGCGCTCCTTACGCCCTAACGCCGAATGTCCTTTTAGCATCTCCCGAATC
CTATGACGGCAGGTGTAGAGAACCAGGGCCAAAGTGGTTATTAGAGCGGC
ACAGGCCACCACCAGGATCCCGATGATCGCCTGCTTACTGGCGGCTCCAT
GGGCACAGCCTAAAAGTGGTTCTGCCAAATGGGCCAGTGGCAAGTCCCTC
ATAGCCGTTGGATAGGCACAGATGACGGGCGCATACTGTCCACTGGCATT
CCTGCTGACCAGCAAATGGCGCATCCATAGTAGTCTGCAGTCACATTCAA
ATGGATTCTCCGAGAGATCAAGGGTTTGTAGATCAGCCCAGGGCACTAAA
CCTTCATCCAGGCTGCTTCAATTGATTGGCCTTCAGCACCACTGTGCTCA
GATGGGGCAAGCCACCCAAGGCGATGGAGGATAATTCGTTCAACTGCTTG
TTACTGGAGAAGGTAAGGTGCTCCAGGTTTGTGTTTCC

BS18112.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11282-PA 1623 caps-RA 1123..1611 517..29 2276 98.5 Minus
CG11282-PB 1623 caps-RB 1123..1611 517..29 2276 98.5 Minus
CG11282-PC 2247 caps-RC 1123..1551 517..89 2070 99.3 Minus
CG11282-PA 1623 caps-RA 1003..1123 638..518 555 98.3 Minus
CG11282-PB 1623 caps-RB 1003..1123 638..518 555 98.3 Minus
CG11282-PC 2247 caps-RC 1003..1123 638..518 555 98.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
caps-RE 4841 CG11282-RE 1890..2503 638..24 2904 98.2 Minus
caps-RD 4841 CG11282-RD 1890..2503 638..24 2904 98.2 Minus
caps-RB 4628 CG11282-RB 1677..2290 638..24 2904 98.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13276691..13277304 638..24 2879 98.2 Minus
Blast to na_te.dros performed on 2015-02-10 16:34:06 has no hits.

BS18112.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:53 Download gff for BS18112.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11282-PB 1003..1616 24..638 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:04:16 Download gff for BS18112.3prime
Subject Subject Range Query Range Percent Splice Strand
caps-RA 1890..2503 24..638 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:27 Download gff for BS18112.3prime
Subject Subject Range Query Range Percent Splice Strand
caps-RB 1677..2290 24..638 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:27 Download gff for BS18112.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13276691..13277304 24..638 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:04:16 Download gff for BS18112.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13269791..13270404 24..638 98   Minus

BS18112.5prime Sequence

738 bp (673 high quality bases) assembled on 2007-06-06

> BS18112.5prime
GAAGTTATCACTTTACATGAGCAGACGACGGGCAATTACCATGTCGTTGG
CTCCCCATCTTGGCCAGGCTTTTAGCCTCTGCCTGTGCCTGTGCCTGTGC
CTGGTTTTGGCCACATTGCCAGTGGCCCTGGGATTGGCCAACTGCCCGAA
TGGCTGCGAGTGCGACGACGACACCCTGATGGTCAATTGCGGCGAGGGCA
CGCTGGACGTCCTGCCCATCGCCCTGAATCCCGCCATCCAGCGACTGGTG
ATCAAGAACAACAAACTGAAGACCATCGACTCATCCATGCAGTTCTATGC
GCAGCTCACTTTCCTTGATCTGTCATTCAATGACATGCTCACCATACCGG
AACGATCGTTTGCGTATCACGCCAAATTGCAGGAGCTGCATCTGGACCAC
AATAAGATTGGCCAGGTGTCGAACAAGACCTTCCTCGGACTGTCGACCAT
CAGTGTTTTAAATCTGAGAGGCAACTTGATTGCCGAACTAGAGTACCGCA
CTTTTTCGCCTATGGTCAAGCTCGCTGAGCTTAATCTCGGCCAGAATCGC
ATCAGCCACATCGATCCACATGCCCTGGATGGCTTGGACAACCTGAGGGT
GCTCTATCTGGATGATAATACACTGACCACAGTGCCGGGAGAACTAACCT
TCCAGGCACTCCACTCCCTGGCAGAGCTATACTTGGGCACCAATTCCTTT
ATGACAATTCCCGGAGGAGCTTTCCAGGATCTCAAAGG

BS18112.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11282-PC 2247 caps-RC 1..722 17..738 3610 100 Plus
CG11282-PA 1623 caps-RA 1..722 17..738 3610 100 Plus
CG11282-PB 1623 caps-RB 1..722 17..738 3610 100 Plus
CG11280-PA 2214 trn-RA 136..209 191..264 145 87.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
caps-RE 4841 CG11282-RE 888..1609 17..738 3610 100 Plus
caps-RD 4841 CG11282-RD 888..1609 17..738 3610 100 Plus
caps-RB 4628 CG11282-RB 675..1396 17..738 3610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13275689..13276410 17..738 3610 100 Plus
3L 28110227 3L 13115372..13115795 130..553 545 75.2 Plus
Blast to na_te.dros performed on 2015-02-10 17:31:11 has no hits.

BS18112.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:10:58 Download gff for BS18112.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11282-PB 1..722 17..738 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:52 Download gff for BS18112.5prime
Subject Subject Range Query Range Percent Splice Strand
caps-RA 886..1609 14..738 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:07 Download gff for BS18112.5prime
Subject Subject Range Query Range Percent Splice Strand
caps-RB 673..1396 14..738 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:07 Download gff for BS18112.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13275687..13276410 14..738 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:52 Download gff for BS18112.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13268787..13269510 14..738 99   Plus

BS18112.complete Sequence

1655 bp assembled on 2010-01-09

GenBank Submission: KX802009

> BS18112.complete
GAAGTTATCAGTCGACATGAGCAGACGACGGGCAATTACCATGTCGTTGG
CTCCCCATCTTGGCCAGGCTTTTAGCCTCTGCCTGTGCCTGTGCCTGTGC
CTGGTTTTGGCCACATTGCCAGTGGCCCTGGGATTGGCCAACTGCCCGAA
TGGCTGCGAGTGCGACGACGACACCCTGATGGTCAATTGCGGCGAGGGCA
CGCTGGACGTCCTGCCCATCGCCCTGAATCCCGCCATCCAGCGACTGGTG
ATCAAGAACAACAAACTGAAGACCATCGACTCATCCATGCAGTTCTATGC
GCAGCTCACTTTCCTTGATCTGTCATTCAATGACATGCTCACCATACCGG
AACGATCGTTTGCGTATCACGCCAAATTGCAGGAGCTGCATCTGGACCAC
AATAAGATTGGCCAGGTGTCGAACAAGACCTTCCTCGGACTGTCGACCAT
CAGTGTTTTAAATCTGAGAGGCAACTTGATTGCCGAACTAGAGTACCGCA
CTTTTTCGCCTATGGTCAAGCTCGCTGAGCTTAATCTCGGCCAGAATCGC
ATCAGCCACATCGATCCACATGCCCTGGATGGCTTGGACAACCTGAGGGT
GCTCTATCTGGATGATAATACACTGACCACAGTGCCGGGAGAACTAACCT
TCCAGGCACTCCACTCCCTGGCAGAGCTATACTTGGGCACCAATTCCTTT
ATGACAATTCCCGGAGGAGCTTTCCAGGATCTCAAAGGATTAACCAGATT
GGATCTGCGCGGAGCTGGCTTGCACAACATCTCGGGAGATGCTCTCAAGG
GTCTGGTGTCCCTTCGCTTTTTGGATCTGTCAGATAATCGCCTCCCTGCG
ATACCCACAGCAGCTTTTCAGCGATTGGGACGCCTGGAACAGCTAAACAT
TGGCCAGAATGACTTTGAGGTGATCTCCTCGGGCGCCTTTTCGGGTCTTC
GGGAGCTGAGGCACTTGGAACTGACAGGTGCCCAGCGACTGAGACGCGTG
GAAAGCGGTGCCTTCAGTGGAAACACAAACCTGGAGCACCTTAACCTCTC
CAGTAACAAGCAGTTGAACGAATTATCCTCCATCGCCTTGGGTGGCTTGC
CCCATCTGAGCACAGTGGTGCTGAAGGCCAATCAATTGAGCAGCCTGGAT
GAAGGTTTAGTGCCCTGGGCTGATCTACAAACCCTTGATCTCTCGGAGAA
TCCATTTGAATGTGACTGCAGACTACTATGGCTGCGCCATTTGCTGGTCA
GCAGGAATGCCAGTGGACAGTATGCGCCCGTCATCTGTGCCTATCCAACG
GCTCTGAGGGACTTGCCACTGGCCCATTTGGCAGAACCACTTTTAGGCTG
TGCCCATGGAGCCGCCAGTAAGCAGGCGATCATCGGGATCCTGGTGGTGG
CCTGTGCCGCTCTAATAACCACTTTGGCCCTGGTTCTCTACACCTGCCGT
CATAGGATTCGGGAGATGCTAAAAGGACATTCGGCGTTAGGGCGTAAGGA
GCGCGAATACCAAAAGACCTTCTCCGATGAAGAGTACATGTCGCGACCAC
CTCCTGGTGGCGGTGGAGTTCATCCTGCCGCTGGGGGCTATCCCTACATC
GCTGGCAACAGCCGGATGATACCGGTCACCGAGCTTTAGAAGCTTTCTAG
ACCAT

BS18112.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
caps-RE 2436 CG11282-PE 1..1623 17..1639 8115 100 Plus
caps-RD 2343 CG11282-PD 1..1623 17..1639 8115 100 Plus
caps-RB 1623 CG11282-PB 1..1623 17..1639 8115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
caps-RE 4841 CG11282-RE 888..2510 17..1639 8115 100 Plus
caps-RD 4841 CG11282-RD 888..2510 17..1639 8115 100 Plus
caps-RB 4628 CG11282-RB 675..2297 17..1639 8115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13275689..13277311 17..1639 8115 100 Plus
3L 28110227 3L 13115372..13115795 130..553 545 75.2 Plus
Blast to na_te.dros performed on 2014-11-28 02:54:47 has no hits.

BS18112.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:57 Download gff for BS18112.complete
Subject Subject Range Query Range Percent Splice Strand
caps-RB 678..2300 17..1639 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:12 Download gff for BS18112.complete
Subject Subject Range Query Range Percent Splice Strand
caps-RA 888..2510 17..1639 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:11 Download gff for BS18112.complete
Subject Subject Range Query Range Percent Splice Strand
caps-RB 678..2300 17..1639 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:34 Download gff for BS18112.complete
Subject Subject Range Query Range Percent Splice Strand
caps-RB 675..2297 17..1639 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:34 Download gff for BS18112.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13275689..13277311 17..1639 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:12 Download gff for BS18112.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13268789..13270411 17..1639 100   Plus

BS18112.pep Sequence

Translation from 16 to 1638

> BS18112.pep
MSRRRAITMSLAPHLGQAFSLCLCLCLCLVLATLPVALGLANCPNGCECD
DDTLMVNCGEGTLDVLPIALNPAIQRLVIKNNKLKTIDSSMQFYAQLTFL
DLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLSTISVLNL
RGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDD
NTLTTVPGELTFQALHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGA
GLHNISGDALKGLVSLRFLDLSDNRLPAIPTAAFQRLGRLEQLNIGQNDF
EVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNTNLEHLNLSSNKQL
NELSSIALGGLPHLSTVVLKANQLSSLDEGLVPWADLQTLDLSENPFECD
CRLLWLRHLLVSRNASGQYAPVICAYPTALRDLPLAHLAEPLLGCAHGAA
SKQAIIGILVVACAALITTLALVLYTCRHRIREMLKGHSALGRKEREYQK
TFSDEEYMSRPPPGGGGVHPAAGGYPYIAGNSRMIPVTEL*

BS18112.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
caps-PE 811 CG11282-PE 1..540 1..540 2778 100 Plus
caps-PD 780 CG11282-PD 1..540 1..540 2778 100 Plus
caps-PB 540 CG11282-PB 1..540 1..540 2778 100 Plus
caps-PA 540 CG11282-PA 1..540 1..540 2778 100 Plus
trn-PA 737 CG11280-PA 15..513 30..519 1600 63.7 Plus