Clone Sequence Records
BS18117.complete Sequence
1283 bp assembled on 2009-12-07
GenBank Submission: KX804444
> BS18117.complete
GAAGTTATCAGTCGACATGCCCGATAACAGCAATAAATTTAGCGCCTCCA
GCGATGTCCGCATTCCGGCCTGGATCAATGAGGCCTACTTCAAGCGACTG
CTCAAGCGGGAGTTTCGGGAGTTCCGGCGCATCCTCAACCTCTCGATCAT
TCCAGCCACGCCGCCCGGAGAAACCTATACATCGCTGCTGATGCGCATCG
TCATCGACATCGAGTTGAAAGATGGATTCTCACAGCAGAAGTCCTACATA
GTAAAGACCATGCTGGACGACGCCCAGGGAAATGGTGGATTCGTGAATAC
CCTCAACATTTTTCCAAAGGAGAAGATGATGTACGAAACGATTATACCTA
ATTTGGAACAGCTTTACGAAGAAGCTGGGCTGAGTGTAAAGTTTGCACCA
AAGTGCCACCATGCGGAGGATATCAAAGGAAGGATCTGCCTGGTTCAGGA
GGATTTGCAAACGAAAAAGTACCGAAATATAAATCGCCTCAAGGGCTTCG
ACATGGCCCACATGCATCGAGTGCTAGAAAAGCTGGCGGAATTCCATGCA
GCAGGTGCCGTTTGGCGTCAGCGAAAAGGACCGTTTCCCGATGATTTTCA
GAGGATTTACCTACCCGCCAACTATCAGAAATCGAAATCGTATCAGGCGA
GGCTCCAGAGCTATAAAACTGCAATAGCCAGTTGGGGTCTGGCCGATCAC
GAACAGTATCCCACGGCCGATCAATTTGTGCAATCCTACGCCAGCTGCTT
TAACAACAATCCGCAGGAGTTTAAAGTTCTAAATCACGGTGATTTTTGGT
CCAGCAACATAATGCTAAGCTATACTCAAACTGGTGATATCAACCAGGTG
CGTTTCGTGGACTTCCAACTGTGCAAGTGGGGTAGTCCGGCTCAGGATCT
TTGGGAACTCATCATATGTTCGGCACGGCATAGTATACGAATACAATACT
TTGACTACTTCATCAGGATATACCACACACACCTAGTGCGCTGCCTAAAG
ATCCTAAAATACAGCGAACGAATACCAATGCTAAGGGAGCTGCATATGAG
CATGATCAAGTATGGATTTTGGGGCTACTTTACCACCTTCACGCACCTTG
TGTTCATTTTGCTGCCACCGGATACGGAAGCTAGCTTGGTGAAGCTTACG
CAGCCGGGAGAGGAAGGAGATCGCTTCCGGTCCAAGGTGTACACAAATCC
ACTCTACGTCCGCTCTGCGCTCAGCATATTCCCCTTTCTACTTCGGCGTG
GTATTCTAGACTTTTGAAAGCTTTCTAGACCAT
BS18117.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:43:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31102-RA | 1251 | CG31102-PA | 1..1251 | 17..1267 | 6240 | 99.9 | Plus |
CG31102-RB | 1263 | CG31102-PB | 1..1263 | 17..1267 | 6085 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31102-RA | 1744 | CG31102-RA | 293..1545 | 16..1268 | 6250 | 99.9 | Plus |
CG31102-RB | 1756 | CG31102-RB | 293..1557 | 16..1268 | 6095 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25294348..25294837 | 709..220 | 2435 | 99.8 | Minus |
3R | 32079331 | 3R | 25293907..25294271 | 1074..710 | 1825 | 100 | Minus |
3R | 32079331 | 3R | 25295097..25295302 | 221..16 | 1030 | 100 | Minus |
3R | 32079331 | 3R | 25293657..25293852 | 1268..1073 | 980 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:43:40 has no hits.
BS18117.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:21 Download gff for
BS18117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31102-RA | 1..1251 | 17..1267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:03 Download gff for
BS18117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31102-RA | 290..1539 | 17..1266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:01 Download gff for
BS18117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31102-RA | 294..1543 | 17..1266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:21 Download gff for
BS18117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31102-RA | 283..1551 | 9..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:25 Download gff for
BS18117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31102-RA | 294..1543 | 17..1266 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:25 Download gff for
BS18117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25293659..25293851 | 1074..1266 | 100 | <- | Minus |
3R | 25293908..25294271 | 710..1073 | 100 | <- | Minus |
3R | 25294348..25294835 | 222..709 | 99 | <- | Minus |
3R | 25295097..25295301 | 17..221 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:01 Download gff for
BS18117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21119381..21119573 | 1074..1266 | 100 | <- | Minus |
arm_3R | 21119630..21119993 | 710..1073 | 100 | <- | Minus |
arm_3R | 21120070..21120557 | 222..709 | 99 | <- | Minus |
arm_3R | 21120819..21121023 | 17..221 | 100 | | Minus |
BS18117.3prime Sequence
874 bp (792 high quality bases) assembled on 2007-06-06
> BS18117.3prime
ATGGTCTAGAAAGCTTTCAAACGTCTAGAATACCACGCCGAAGTAGAAAG
GGGAATATGCTGAGCGCAGAGCGGACGTAGAGTGGATTTGTGTACACCTT
GGACCGGAAGCGATCTCCTTCCTCTCCCGGCTGCGTAAGCTTCACCAAGC
TAGCTTCCGTATCCGGTGGCAGCAAAATGAACACAAGGTGCGTGAAGGTG
GTAAAGTAGCCCCAAAATCCATACTTGATCATGCTCATATGCAGCTCCCT
TAGCATTGGTATTCGTTCGCTGTATTTTAGGATCTTTAGGCAGCGCACTA
GGTGTGTGTGGTATATCCTGATGAAGTAGTCAAAGTATTGTATTCGTATA
CTATGCCGTGCCGAACATATGATGAGTTCCCAAAGATCCTGAGCCGGACT
ACCCCACTTGCACAGTTGGAAGTCCACGAAACGCACCTGGTTGATATCAC
CAGTTTGAGTATAGCTTAGCATTATGTTGCTGGACCAAAAATCACCGTGA
TTTAGAACTTTAAACTCCTGCGGATTGTTGTTAAAGCAGCTGGCGTAGGA
TTGCACAAATTGATCGGCCGTGGGATACTGTTCGTGATCGGCCAGACCCC
AACTGGCTATTGCAGTTTTATAGCTCTGGAGCCTCGCCTGATACGATTTC
GATTTCTGATAGTTGGCGGGTAGGTAAATCCTCTGAAAATCATCGGGAAA
CGGTCCTTTTCGCTGACGCCAAACGGCACCTGCTGCATGGAATTCCGCCA
GCTTTTCTAGCACTCGATGCATGTGGGCCATGTCGAAGCCCTTGAGGCGA
TTTATATTTCGGTACTTTTTCGTTTGCAAATCCTCCTGAACCAGGCAGAT
CCTTCCTTTGATATCCTCCGCATG
BS18117.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31102-PA | 1251 | CG31102-RA | 394..1251 | 874..17 | 4265 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31102-RA | 1744 | CG31102-RA | 687..1545 | 874..16 | 4280 | 99.9 | Minus |
CG31102-RB | 1756 | CG31102-RB | 687..1557 | 874..16 | 4150 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25293907..25294271 | 210..574 | 1825 | 100 | Plus |
3R | 32079331 | 3R | 25294348..25294647 | 575..874 | 1500 | 100 | Plus |
3R | 32079331 | 3R | 25293657..25293852 | 16..211 | 965 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:18:56 has no hits.
BS18117.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:11:33 Download gff for
BS18117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31102-PA | 394..1251 | 17..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:49:25 Download gff for
BS18117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31102-RA | 687..1555 | 6..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:45 Download gff for
BS18117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31102-RA | 687..1555 | 6..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:45 Download gff for
BS18117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25293647..25293851 | 6..210 | 97 | <- | Plus |
3R | 25293908..25294271 | 211..574 | 100 | <- | Plus |
3R | 25294348..25294647 | 575..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:49:25 Download gff for
BS18117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21119369..21119573 | 6..210 | 97 | <- | Plus |
arm_3R | 21119630..21119993 | 211..574 | 100 | <- | Plus |
arm_3R | 21120070..21120369 | 575..874 | 100 | | Plus |
BS18117.5prime Sequence
856 bp (762 high quality bases) assembled on 2007-06-06
> BS18117.5prime
GAAGTTATCAGTCGACATGCCCGATAACAGCAATAAATTTAGCGCCTCCA
GCGATGTCCGCATTCCGGCCTGGATCAATGAGGCCTACTTCAAGCGACTG
CTCAAGCGGGAGTTTCGGGAGTTCCGGCGCATCCTCAACCTCTCGATCAT
TCCAGCCACGCCGCCCGGAGAAACCTATACATCGCTGCTGATGCGCATCG
TCATCGACATCGAGTTGAAAGATGGATTCTCACAGCAGAAGTCCTACATA
GTAAAGACCATGCTGGACGACGCCCAGGGAAATGGTGGATTCGTGAATAC
CCTCAACATTTTTCCAAAGGAGAAGATGATGTACGAAACGATTATACCTA
ATTTGGAACAGCTTTACGAAGAAGCTGGGCTGAGTGTAAAGTTTGCACCA
AAGTGCCACCATGCGGAGGATATCAAAGGAAGGATCTGCCTGGTTCAGGA
GGATTTGCAAACGAAAAAGTACCGAAATATAAATCGCCTCAAGGGCTTCG
ACATGGCCCACATGCATCGAGTGCTAGAAAAGCTGGCGGAATTCCATGCA
GCAGGTGCCGTTTGGCGTCAGCGAAAAGGACCGTTTCCCGATGATTTTCA
GAGGATTTACCTACCCGCCAACTATCAGAAATCGAAATCGTATCAGGCGA
GGCTCCAGAGCTATAAAACTGCAATAGCCAGTTGGGGTCTGGCCGATCAC
GAACAGTATCCCACGGCCGATCAATTTGTGCAATCCTACGCCAGCTGCTT
TAACAACATCCGCANGAGTTTAAAGTTCTAAATCACGGTGATTTTTGGTC
CAGCAACATAATGCTAAGCTATACTCAAACTGGTGATATCAACCAGGTGC
GTTTCG
BS18117.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:11:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31102-PA | 1251 | CG31102-RA | 1..742 | 17..758 | 3685 | 99.8 | Plus |
CG31102-PA | 1251 | CG31102-RA | 743..841 | 758..856 | 476 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31102-RA | 1744 | CG31102-RA | 293..1134 | 16..856 | 4159 | 99.6 | Plus |
CG31102-RB | 1756 | CG31102-RB | 293..1146 | 16..856 | 4029 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25294348..25294837 | 709..220 | 2435 | 99.8 | Minus |
3R | 32079331 | 3R | 25295097..25295302 | 221..16 | 1030 | 100 | Minus |
3R | 32079331 | 3R | 25294124..25294271 | 856..710 | 679 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:39:59 has no hits.
BS18117.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:11:38 Download gff for
BS18117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31102-PA | 1..841 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:53:52 Download gff for
BS18117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31102-RA | 287..1134 | 9..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:19:33 Download gff for
BS18117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31102-RA | 287..1134 | 9..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:19:33 Download gff for
BS18117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25295097..25295308 | 9..221 | 99 | | Minus |
3R | 25294124..25294271 | 710..856 | 98 | <- | Minus |
3R | 25294348..25294835 | 222..709 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:53:52 Download gff for
BS18117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21119846..21119993 | 710..856 | 98 | <- | Minus |
arm_3R | 21120070..21120557 | 222..709 | 99 | <- | Minus |
arm_3R | 21120819..21121030 | 9..221 | 99 | | Minus |
BS18117.pep Sequence
Translation from 16 to 1266
> BS18117.pep
MPDNSNKFSASSDVRIPAWINEAYFKRLLKREFREFRRILNLSIIPATPP
GETYTSLLMRIVIDIELKDGFSQQKSYIVKTMLDDAQGNGGFVNTLNIFP
KEKMMYETIIPNLEQLYEEAGLSVKFAPKCHHAEDIKGRICLVQEDLQTK
KYRNINRLKGFDMAHMHRVLEKLAEFHAAGAVWRQRKGPFPDDFQRIYLP
ANYQKSKSYQARLQSYKTAIASWGLADHEQYPTADQFVQSYASCFNNNPQ
EFKVLNHGDFWSSNIMLSYTQTGDINQVRFVDFQLCKWGSPAQDLWELII
CSARHSIRIQYFDYFIRIYHTHLVRCLKILKYSERIPMLRELHMSMIKYG
FWGYFTTFTHLVFILLPPDTEASLVKLTQPGEEGDRFRSKVYTNPLYVRS
ALSIFPFLLRRGILDF*
BS18117.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31102-PA | 416 | CG31102-PA | 1..416 | 1..416 | 2211 | 100 | Plus |
CG31102-PB | 420 | CG31102-PB | 1..420 | 1..416 | 2196 | 99 | Plus |
CG31288-PA | 428 | CG31288-PA | 1..423 | 1..416 | 902 | 40.6 | Plus |
CG10550-PD | 425 | CG10550-PD | 3..422 | 2..414 | 863 | 41.3 | Plus |
CG10550-PC | 425 | CG10550-PC | 3..422 | 2..414 | 863 | 41.3 | Plus |