Clone BS18117 Report

Search the DGRC for BS18117

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:181
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG31102-RA
Protein status:BS18117.pep: full length peptide match
Sequenced Size:1283

Clone Sequence Records

BS18117.complete Sequence

1283 bp assembled on 2009-12-07

GenBank Submission: KX804444

> BS18117.complete
GAAGTTATCAGTCGACATGCCCGATAACAGCAATAAATTTAGCGCCTCCA
GCGATGTCCGCATTCCGGCCTGGATCAATGAGGCCTACTTCAAGCGACTG
CTCAAGCGGGAGTTTCGGGAGTTCCGGCGCATCCTCAACCTCTCGATCAT
TCCAGCCACGCCGCCCGGAGAAACCTATACATCGCTGCTGATGCGCATCG
TCATCGACATCGAGTTGAAAGATGGATTCTCACAGCAGAAGTCCTACATA
GTAAAGACCATGCTGGACGACGCCCAGGGAAATGGTGGATTCGTGAATAC
CCTCAACATTTTTCCAAAGGAGAAGATGATGTACGAAACGATTATACCTA
ATTTGGAACAGCTTTACGAAGAAGCTGGGCTGAGTGTAAAGTTTGCACCA
AAGTGCCACCATGCGGAGGATATCAAAGGAAGGATCTGCCTGGTTCAGGA
GGATTTGCAAACGAAAAAGTACCGAAATATAAATCGCCTCAAGGGCTTCG
ACATGGCCCACATGCATCGAGTGCTAGAAAAGCTGGCGGAATTCCATGCA
GCAGGTGCCGTTTGGCGTCAGCGAAAAGGACCGTTTCCCGATGATTTTCA
GAGGATTTACCTACCCGCCAACTATCAGAAATCGAAATCGTATCAGGCGA
GGCTCCAGAGCTATAAAACTGCAATAGCCAGTTGGGGTCTGGCCGATCAC
GAACAGTATCCCACGGCCGATCAATTTGTGCAATCCTACGCCAGCTGCTT
TAACAACAATCCGCAGGAGTTTAAAGTTCTAAATCACGGTGATTTTTGGT
CCAGCAACATAATGCTAAGCTATACTCAAACTGGTGATATCAACCAGGTG
CGTTTCGTGGACTTCCAACTGTGCAAGTGGGGTAGTCCGGCTCAGGATCT
TTGGGAACTCATCATATGTTCGGCACGGCATAGTATACGAATACAATACT
TTGACTACTTCATCAGGATATACCACACACACCTAGTGCGCTGCCTAAAG
ATCCTAAAATACAGCGAACGAATACCAATGCTAAGGGAGCTGCATATGAG
CATGATCAAGTATGGATTTTGGGGCTACTTTACCACCTTCACGCACCTTG
TGTTCATTTTGCTGCCACCGGATACGGAAGCTAGCTTGGTGAAGCTTACG
CAGCCGGGAGAGGAAGGAGATCGCTTCCGGTCCAAGGTGTACACAAATCC
ACTCTACGTCCGCTCTGCGCTCAGCATATTCCCCTTTCTACTTCGGCGTG
GTATTCTAGACTTTTGAAAGCTTTCTAGACCAT

BS18117.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG31102-RA 1251 CG31102-PA 1..1251 17..1267 6240 99.9 Plus
CG31102-RB 1263 CG31102-PB 1..1263 17..1267 6085 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG31102-RA 1744 CG31102-RA 293..1545 16..1268 6250 99.9 Plus
CG31102-RB 1756 CG31102-RB 293..1557 16..1268 6095 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25294348..25294837 709..220 2435 99.8 Minus
3R 32079331 3R 25293907..25294271 1074..710 1825 100 Minus
3R 32079331 3R 25295097..25295302 221..16 1030 100 Minus
3R 32079331 3R 25293657..25293852 1268..1073 980 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:43:40 has no hits.

BS18117.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:21 Download gff for BS18117.complete
Subject Subject Range Query Range Percent Splice Strand
CG31102-RA 1..1251 17..1267 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:03 Download gff for BS18117.complete
Subject Subject Range Query Range Percent Splice Strand
CG31102-RA 290..1539 17..1266 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:01 Download gff for BS18117.complete
Subject Subject Range Query Range Percent Splice Strand
CG31102-RA 294..1543 17..1266 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:21 Download gff for BS18117.complete
Subject Subject Range Query Range Percent Splice Strand
CG31102-RA 283..1551 9..1278 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:25 Download gff for BS18117.complete
Subject Subject Range Query Range Percent Splice Strand
CG31102-RA 294..1543 17..1266 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:25 Download gff for BS18117.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25293659..25293851 1074..1266 100 <- Minus
3R 25293908..25294271 710..1073 100 <- Minus
3R 25294348..25294835 222..709 99 <- Minus
3R 25295097..25295301 17..221 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:01 Download gff for BS18117.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21119381..21119573 1074..1266 100 <- Minus
arm_3R 21119630..21119993 710..1073 100 <- Minus
arm_3R 21120070..21120557 222..709 99 <- Minus
arm_3R 21120819..21121023 17..221 100   Minus

BS18117.3prime Sequence

874 bp (792 high quality bases) assembled on 2007-06-06

> BS18117.3prime
ATGGTCTAGAAAGCTTTCAAACGTCTAGAATACCACGCCGAAGTAGAAAG
GGGAATATGCTGAGCGCAGAGCGGACGTAGAGTGGATTTGTGTACACCTT
GGACCGGAAGCGATCTCCTTCCTCTCCCGGCTGCGTAAGCTTCACCAAGC
TAGCTTCCGTATCCGGTGGCAGCAAAATGAACACAAGGTGCGTGAAGGTG
GTAAAGTAGCCCCAAAATCCATACTTGATCATGCTCATATGCAGCTCCCT
TAGCATTGGTATTCGTTCGCTGTATTTTAGGATCTTTAGGCAGCGCACTA
GGTGTGTGTGGTATATCCTGATGAAGTAGTCAAAGTATTGTATTCGTATA
CTATGCCGTGCCGAACATATGATGAGTTCCCAAAGATCCTGAGCCGGACT
ACCCCACTTGCACAGTTGGAAGTCCACGAAACGCACCTGGTTGATATCAC
CAGTTTGAGTATAGCTTAGCATTATGTTGCTGGACCAAAAATCACCGTGA
TTTAGAACTTTAAACTCCTGCGGATTGTTGTTAAAGCAGCTGGCGTAGGA
TTGCACAAATTGATCGGCCGTGGGATACTGTTCGTGATCGGCCAGACCCC
AACTGGCTATTGCAGTTTTATAGCTCTGGAGCCTCGCCTGATACGATTTC
GATTTCTGATAGTTGGCGGGTAGGTAAATCCTCTGAAAATCATCGGGAAA
CGGTCCTTTTCGCTGACGCCAAACGGCACCTGCTGCATGGAATTCCGCCA
GCTTTTCTAGCACTCGATGCATGTGGGCCATGTCGAAGCCCTTGAGGCGA
TTTATATTTCGGTACTTTTTCGTTTGCAAATCCTCCTGAACCAGGCAGAT
CCTTCCTTTGATATCCTCCGCATG

BS18117.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31102-PA 1251 CG31102-RA 394..1251 874..17 4265 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31102-RA 1744 CG31102-RA 687..1545 874..16 4280 99.9 Minus
CG31102-RB 1756 CG31102-RB 687..1557 874..16 4150 98.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25293907..25294271 210..574 1825 100 Plus
3R 32079331 3R 25294348..25294647 575..874 1500 100 Plus
3R 32079331 3R 25293657..25293852 16..211 965 99.5 Plus
Blast to na_te.dros performed on 2015-02-11 05:18:56 has no hits.

BS18117.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:11:33 Download gff for BS18117.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31102-PA 394..1251 17..874 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:49:25 Download gff for BS18117.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31102-RA 687..1555 6..874 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:45 Download gff for BS18117.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31102-RA 687..1555 6..874 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:45 Download gff for BS18117.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25293647..25293851 6..210 97 <- Plus
3R 25293908..25294271 211..574 100 <- Plus
3R 25294348..25294647 575..874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:49:25 Download gff for BS18117.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21119369..21119573 6..210 97 <- Plus
arm_3R 21119630..21119993 211..574 100 <- Plus
arm_3R 21120070..21120369 575..874 100   Plus

BS18117.5prime Sequence

856 bp (762 high quality bases) assembled on 2007-06-06

> BS18117.5prime
GAAGTTATCAGTCGACATGCCCGATAACAGCAATAAATTTAGCGCCTCCA
GCGATGTCCGCATTCCGGCCTGGATCAATGAGGCCTACTTCAAGCGACTG
CTCAAGCGGGAGTTTCGGGAGTTCCGGCGCATCCTCAACCTCTCGATCAT
TCCAGCCACGCCGCCCGGAGAAACCTATACATCGCTGCTGATGCGCATCG
TCATCGACATCGAGTTGAAAGATGGATTCTCACAGCAGAAGTCCTACATA
GTAAAGACCATGCTGGACGACGCCCAGGGAAATGGTGGATTCGTGAATAC
CCTCAACATTTTTCCAAAGGAGAAGATGATGTACGAAACGATTATACCTA
ATTTGGAACAGCTTTACGAAGAAGCTGGGCTGAGTGTAAAGTTTGCACCA
AAGTGCCACCATGCGGAGGATATCAAAGGAAGGATCTGCCTGGTTCAGGA
GGATTTGCAAACGAAAAAGTACCGAAATATAAATCGCCTCAAGGGCTTCG
ACATGGCCCACATGCATCGAGTGCTAGAAAAGCTGGCGGAATTCCATGCA
GCAGGTGCCGTTTGGCGTCAGCGAAAAGGACCGTTTCCCGATGATTTTCA
GAGGATTTACCTACCCGCCAACTATCAGAAATCGAAATCGTATCAGGCGA
GGCTCCAGAGCTATAAAACTGCAATAGCCAGTTGGGGTCTGGCCGATCAC
GAACAGTATCCCACGGCCGATCAATTTGTGCAATCCTACGCCAGCTGCTT
TAACAACATCCGCANGAGTTTAAAGTTCTAAATCACGGTGATTTTTGGTC
CAGCAACATAATGCTAAGCTATACTCAAACTGGTGATATCAACCAGGTGC
GTTTCG

BS18117.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG31102-PA 1251 CG31102-RA 1..742 17..758 3685 99.8 Plus
CG31102-PA 1251 CG31102-RA 743..841 758..856 476 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31102-RA 1744 CG31102-RA 293..1134 16..856 4159 99.6 Plus
CG31102-RB 1756 CG31102-RB 293..1146 16..856 4029 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25294348..25294837 709..220 2435 99.8 Minus
3R 32079331 3R 25295097..25295302 221..16 1030 100 Minus
3R 32079331 3R 25294124..25294271 856..710 679 98.6 Minus
Blast to na_te.dros performed on 2015-02-12 10:39:59 has no hits.

BS18117.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:11:38 Download gff for BS18117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31102-PA 1..841 17..856 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:53:52 Download gff for BS18117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31102-RA 287..1134 9..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:19:33 Download gff for BS18117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31102-RA 287..1134 9..856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:19:33 Download gff for BS18117.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25295097..25295308 9..221 99   Minus
3R 25294124..25294271 710..856 98 <- Minus
3R 25294348..25294835 222..709 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:53:52 Download gff for BS18117.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21119846..21119993 710..856 98 <- Minus
arm_3R 21120070..21120557 222..709 99 <- Minus
arm_3R 21120819..21121030 9..221 99   Minus

BS18117.pep Sequence

Translation from 16 to 1266

> BS18117.pep
MPDNSNKFSASSDVRIPAWINEAYFKRLLKREFREFRRILNLSIIPATPP
GETYTSLLMRIVIDIELKDGFSQQKSYIVKTMLDDAQGNGGFVNTLNIFP
KEKMMYETIIPNLEQLYEEAGLSVKFAPKCHHAEDIKGRICLVQEDLQTK
KYRNINRLKGFDMAHMHRVLEKLAEFHAAGAVWRQRKGPFPDDFQRIYLP
ANYQKSKSYQARLQSYKTAIASWGLADHEQYPTADQFVQSYASCFNNNPQ
EFKVLNHGDFWSSNIMLSYTQTGDINQVRFVDFQLCKWGSPAQDLWELII
CSARHSIRIQYFDYFIRIYHTHLVRCLKILKYSERIPMLRELHMSMIKYG
FWGYFTTFTHLVFILLPPDTEASLVKLTQPGEEGDRFRSKVYTNPLYVRS
ALSIFPFLLRRGILDF*

BS18117.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31102-PA 416 CG31102-PA 1..416 1..416 2211 100 Plus
CG31102-PB 420 CG31102-PB 1..420 1..416 2196 99 Plus
CG31288-PA 428 CG31288-PA 1..423 1..416 902 40.6 Plus
CG10550-PD 425 CG10550-PD 3..422 2..414 863 41.3 Plus
CG10550-PC 425 CG10550-PC 3..422 2..414 863 41.3 Plus