Clone BS18122 Report

Search the DGRC for BS18122

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:181
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS33-RA
Protein status:BS18122.pep: full length peptide match
Sequenced Size:374

Clone Sequence Records

BS18122.complete Sequence

374 bp assembled on 2010-02-09

GenBank Submission: KX804717

> BS18122.complete
GAAGTTATCAGTCGACATGTCCCACAAGTACACGGAGCTGATTAAGGTCG
GCACGCAGTATGCTCGCCGGATGAACTACCTCTCAAATCGCATTTTCGGC
GAAGTGGCTCGCACCACAAACGAGAAGTCCATGAAGGTGGTTCGCATGTT
CTCGGAGGAACCAATTCACAAACGGGACTACGTGATCAACTGGTATCCGC
GGCACGTGGAGACGCACTTGCTGATGAAGAACCTTCGCGACTACGGACTG
TTCCGCGATGAGCACCAGGACTTCAAGGAGGAGATGAAGCGTCTGCGCAA
GCTGCGCGGCAAGGCGCCTCCCAAGAAGGGCGAGGGCAAGCGGGCCTCAA
AGAAGTAGAAGCTTTCTAGACCAT

BS18122.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS33-RA 342 CG10406-PA 1..342 17..358 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS33-RA 491 CG10406-RA 118..459 17..358 1710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16436077..16436300 358..135 1120 100 Minus
3R 32079331 3R 16436359..16436480 138..17 610 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:37:48 has no hits.

BS18122.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:19 Download gff for BS18122.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS33-RA 1..342 17..358 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:37 Download gff for BS18122.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS33-RA 114..455 17..358 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:39 Download gff for BS18122.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS33-RA 118..459 17..358 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:19 Download gff for BS18122.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS33-RA 114..455 17..358 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:19 Download gff for BS18122.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS33-RA 118..459 17..358 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:19 Download gff for BS18122.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16436077..16436298 137..358 100 <- Minus
3R 16436361..16436480 17..136 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:39 Download gff for BS18122.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12261799..12262020 137..358 100 <- Minus
arm_3R 12262083..12262202 17..136 100   Minus

BS18122.3prime Sequence

372 bp (372 high quality bases) assembled on 2007-06-06

> BS18122.3prime
ATGGTCTAGAAAGCTTCTACTTCTTTGAGGCCCGCTTGCCCTCGCCCTTC
TTGGGAGGCGCCTTGCCGCGCAGCTTGCGCAGACGCTTCATCTCCTCCTT
GAAGTCCTGGTGCTCATCGCGGAACAGTCCGTAGTCGCGAAGGTTCTTCA
TCAGCAAGTGCGTCTCCACGTGCCGCGGATACCAGTTGATCACGTAGTCC
CGTTTGTGAATTGGTTCCTCCGAGAACATGCGAACCACCTTCATGGACTT
CTCGTTTGTGGTGCGAGCCACTTCGCCGAAAATGCGATTTGAGAGGTAGT
TCATCCGGCGAGCATACTGCGTGCCGACCTTAATCAGCTCCGTGTACTTG
TGGGACATGTCGACTGATAACT

BS18122.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10406-PA 342 mRpS33-RA 1..342 358..17 1710 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS33-RA 491 CG10406-RA 118..459 358..17 1710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16436077..16436300 17..240 1120 100 Plus
3R 32079331 3R 16436359..16436480 237..358 610 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:39:34 has no hits.

BS18122.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:12:07 Download gff for BS18122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10406-PA 1..342 17..358 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:21:05 Download gff for BS18122.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS33-RA 118..459 17..358 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:11 Download gff for BS18122.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS33-RA 118..459 17..358 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:11 Download gff for BS18122.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16436077..16436298 17..238 100 <- Plus
3R 16436361..16436480 239..358 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:21:05 Download gff for BS18122.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12261799..12262020 17..238 100 <- Plus
arm_3R 12262083..12262202 239..358 100   Plus

BS18122.5prime Sequence

372 bp (372 high quality bases) assembled on 2007-06-06

> BS18122.5prime
GAAGTTATCAGTCGACATGTCCCACAAGTACACGGAGCTGATTAAGGTCG
GCACGCAGTATGCTCGCCGGATGAACTACCTCTCAAATCGCATTTTCGGC
GAAGTGGCTCGCACCACAAACGAGAAGTCCATGAAGGTGGTTCGCATGTT
CTCGGAGGAACCAATTCACAAACGGGACTACGTGATCAACTGGTATCCGC
GGCACGTGGAGACGCACTTGCTGATGAAGAACCTTCGCGACTACGGACTG
TTCCGCGATGAGCACCAGGACTTCAAGGAGGAGATGAAGCGTCTGCGCAA
GCTGCGCGGCAAGGCGCCTCCCAAGAAGGGCGAGGGCAAGCGGGCCTCAA
AGAAGTAGAAGCTTTCTAGACC

BS18122.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10406-PA 342 mRpS33-RA 1..342 17..358 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS33-RA 491 CG10406-RA 118..459 17..358 1710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16436077..16436300 358..135 1120 100 Minus
3R 32079331 3R 16436359..16436480 138..17 610 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:37:26 has no hits.

BS18122.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:12:12 Download gff for BS18122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10406-PA 1..342 17..358 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:50 Download gff for BS18122.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS33-RA 118..459 17..358 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:25:35 Download gff for BS18122.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS33-RA 118..459 17..358 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:25:35 Download gff for BS18122.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16436077..16436298 137..358 100 <- Minus
3R 16436361..16436480 17..136 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:50 Download gff for BS18122.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12261799..12262020 137..358 100 <- Minus
arm_3R 12262083..12262202 17..136 100   Minus

BS18122.pep Sequence

Translation from 16 to 357

> BS18122.pep
MSHKYTELIKVGTQYARRMNYLSNRIFGEVARTTNEKSMKVVRMFSEEPI
HKRDYVINWYPRHVETHLLMKNLRDYGLFRDEHQDFKEEMKRLRKLRGKA
PPKKGEGKRASKK*

BS18122.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS33-PA 113 CG10406-PA 1..113 1..113 598 100 Plus