Clone Sequence Records
BS18122.complete Sequence
374 bp assembled on 2010-02-09
GenBank Submission: KX804717
> BS18122.complete
GAAGTTATCAGTCGACATGTCCCACAAGTACACGGAGCTGATTAAGGTCG
GCACGCAGTATGCTCGCCGGATGAACTACCTCTCAAATCGCATTTTCGGC
GAAGTGGCTCGCACCACAAACGAGAAGTCCATGAAGGTGGTTCGCATGTT
CTCGGAGGAACCAATTCACAAACGGGACTACGTGATCAACTGGTATCCGC
GGCACGTGGAGACGCACTTGCTGATGAAGAACCTTCGCGACTACGGACTG
TTCCGCGATGAGCACCAGGACTTCAAGGAGGAGATGAAGCGTCTGCGCAA
GCTGCGCGGCAAGGCGCCTCCCAAGAAGGGCGAGGGCAAGCGGGCCTCAA
AGAAGTAGAAGCTTTCTAGACCAT
BS18122.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS33-RA | 342 | CG10406-PA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS33-RA | 491 | CG10406-RA | 118..459 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16436077..16436300 | 358..135 | 1120 | 100 | Minus |
3R | 32079331 | 3R | 16436359..16436480 | 138..17 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:37:48 has no hits.
BS18122.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:19 Download gff for
BS18122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS33-RA | 1..342 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:37 Download gff for
BS18122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS33-RA | 114..455 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:39 Download gff for
BS18122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS33-RA | 118..459 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:19 Download gff for
BS18122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS33-RA | 114..455 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:19 Download gff for
BS18122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS33-RA | 118..459 | 17..358 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:19 Download gff for
BS18122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16436077..16436298 | 137..358 | 100 | <- | Minus |
3R | 16436361..16436480 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:39 Download gff for
BS18122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12261799..12262020 | 137..358 | 100 | <- | Minus |
arm_3R | 12262083..12262202 | 17..136 | 100 | | Minus |
BS18122.3prime Sequence
372 bp (372 high quality bases) assembled on 2007-06-06
> BS18122.3prime
ATGGTCTAGAAAGCTTCTACTTCTTTGAGGCCCGCTTGCCCTCGCCCTTC
TTGGGAGGCGCCTTGCCGCGCAGCTTGCGCAGACGCTTCATCTCCTCCTT
GAAGTCCTGGTGCTCATCGCGGAACAGTCCGTAGTCGCGAAGGTTCTTCA
TCAGCAAGTGCGTCTCCACGTGCCGCGGATACCAGTTGATCACGTAGTCC
CGTTTGTGAATTGGTTCCTCCGAGAACATGCGAACCACCTTCATGGACTT
CTCGTTTGTGGTGCGAGCCACTTCGCCGAAAATGCGATTTGAGAGGTAGT
TCATCCGGCGAGCATACTGCGTGCCGACCTTAATCAGCTCCGTGTACTTG
TGGGACATGTCGACTGATAACT
BS18122.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10406-PA | 342 | mRpS33-RA | 1..342 | 358..17 | 1710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:39:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS33-RA | 491 | CG10406-RA | 118..459 | 358..17 | 1710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16436077..16436300 | 17..240 | 1120 | 100 | Plus |
3R | 32079331 | 3R | 16436359..16436480 | 237..358 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:39:34 has no hits.
BS18122.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:12:07 Download gff for
BS18122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10406-PA | 1..342 | 17..358 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:21:05 Download gff for
BS18122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS33-RA | 118..459 | 17..358 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:11 Download gff for
BS18122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS33-RA | 118..459 | 17..358 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:11 Download gff for
BS18122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16436077..16436298 | 17..238 | 100 | <- | Plus |
3R | 16436361..16436480 | 239..358 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:21:05 Download gff for
BS18122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12261799..12262020 | 17..238 | 100 | <- | Plus |
arm_3R | 12262083..12262202 | 239..358 | 100 | | Plus |
BS18122.5prime Sequence
372 bp (372 high quality bases) assembled on 2007-06-06
> BS18122.5prime
GAAGTTATCAGTCGACATGTCCCACAAGTACACGGAGCTGATTAAGGTCG
GCACGCAGTATGCTCGCCGGATGAACTACCTCTCAAATCGCATTTTCGGC
GAAGTGGCTCGCACCACAAACGAGAAGTCCATGAAGGTGGTTCGCATGTT
CTCGGAGGAACCAATTCACAAACGGGACTACGTGATCAACTGGTATCCGC
GGCACGTGGAGACGCACTTGCTGATGAAGAACCTTCGCGACTACGGACTG
TTCCGCGATGAGCACCAGGACTTCAAGGAGGAGATGAAGCGTCTGCGCAA
GCTGCGCGGCAAGGCGCCTCCCAAGAAGGGCGAGGGCAAGCGGGCCTCAA
AGAAGTAGAAGCTTTCTAGACC
BS18122.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10406-PA | 342 | mRpS33-RA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS33-RA | 491 | CG10406-RA | 118..459 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16436077..16436300 | 358..135 | 1120 | 100 | Minus |
3R | 32079331 | 3R | 16436359..16436480 | 138..17 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:37:26 has no hits.
BS18122.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:12:12 Download gff for
BS18122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10406-PA | 1..342 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:50 Download gff for
BS18122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS33-RA | 118..459 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:25:35 Download gff for
BS18122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS33-RA | 118..459 | 17..358 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:25:35 Download gff for
BS18122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16436077..16436298 | 137..358 | 100 | <- | Minus |
3R | 16436361..16436480 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:50 Download gff for
BS18122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12261799..12262020 | 137..358 | 100 | <- | Minus |
arm_3R | 12262083..12262202 | 17..136 | 100 | | Minus |
BS18122.pep Sequence
Translation from 16 to 357
> BS18122.pep
MSHKYTELIKVGTQYARRMNYLSNRIFGEVARTTNEKSMKVVRMFSEEPI
HKRDYVINWYPRHVETHLLMKNLRDYGLFRDEHQDFKEEMKRLRKLRGKA
PPKKGEGKRASKK*
BS18122.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:50:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS33-PA | 113 | CG10406-PA | 1..113 | 1..113 | 598 | 100 | Plus |