Clone Sequence Records
BS18124.complete Sequence
347 bp assembled on 2010-02-09
GenBank Submission: KX805260
> BS18124.complete
GAAGTTATCAGTCGACATGAAATTCCTCATCGTCTTCGTCGCCCTCTTCG
CCATGGCAGTGGCCCGCCCCAACCTTGCCGAGATCGTGAGGCAGGTCTCC
GATGTTGAGCCCGAGAAGTGGAGCTCCGACGTGGAGACCAGCGATGGCAC
CAGCATCAAACAGGAGGGTGTCCTCAAGAACGCTGGCACTGACAACGAGG
CCGCTGTCGTCCACGGATCCTTCACCTGGGTGGATGAGAAGACCGGCGAG
AAGTTCACCATCACATACGTGGCTGATGAGAACGGATACCAGCCCCAGGG
CGCCCATCTGCCCGTGGCACCAGTTGCTTAAAAGCTTTCTAGACCAT
BS18124.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp65Ab1-RA | 315 | CG32400-PA | 1..315 | 17..331 | 1575 | 100 | Plus |
| Lcp65Ab2-RA | 315 | CG18773-PA | 1..315 | 17..331 | 1575 | 100 | Plus |
| Cpr65Ax1-RA | 309 | CG34270-PA | 234..309 | 256..331 | 230 | 86.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp65Ab1-RA | 413 | CG32400-RA | 44..360 | 15..331 | 1585 | 100 | Plus |
| Lcp65Ab2-RA | 416 | CG18773-RA | 47..363 | 15..331 | 1585 | 100 | Plus |
| Cpr65Ax1-RA | 389 | CG34270-RA | 282..357 | 256..331 | 230 | 86.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:38:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6146720..6147036 | 15..331 | 1585 | 100 | Plus |
| 3L | 28110227 | 3L | 6149591..6149907 | 15..331 | 1585 | 100 | Plus |
| 3L | 28110227 | 3L | 6147563..6147638 | 331..256 | 230 | 86.8 | Minus |
| 3L | 28110227 | 3L | 6150434..6150509 | 331..256 | 230 | 86.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:38:05 has no hits.
BS18124.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:51 Download gff for
BS18124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ab1-RA | 1..315 | 17..331 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:42 Download gff for
BS18124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ab2-RA | 52..364 | 17..329 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:43 Download gff for
BS18124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ab1-RA | 46..358 | 17..329 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:51 Download gff for
BS18124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ab2-RA | 42..375 | 9..339 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:25 Download gff for
BS18124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ab2-RA | 49..361 | 17..329 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:25 Download gff for
BS18124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6146722..6147034 | 17..329 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:43 Download gff for
BS18124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6139822..6140134 | 17..329 | 100 | | Plus |
BS18124.5prime Sequence
345 bp (345 high quality bases) assembled on 2007-06-06
> BS18124.5prime
GAAGTTATCACTCGACATGAAATTCCTCATCGTCTTCGTCGCCCTCTTCG
CCATGGCAGTGGCCCGCCCCAACCTTGCCGAGATCGTGAGGCAGGTCTCC
GATGTTGAGCCCGAGAAGTGGAGCTCCGACGTGGAGACCAGCGATGGCAC
CAGCATCAAACAGGAGGGTGTCCTCAAGAACGCTGGCACTGACAACGAGG
CCGCTGTCGTCCACGGATCCTTCACCTGGGTGGATGAGAAGACCGGCGAG
AAGTTCACCATCACATACGTGGCTGATGAGAACGGATACCAGCCCCAGGG
CGCCCATCTGCCCGTGGCACCAGTTGCTTAAAAGCTTTCTAGACC
BS18124.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:12:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32400-PA | 315 | Lcp65Ab1-RA | 1..315 | 17..331 | 1575 | 100 | Plus |
| CG18773-PA | 315 | Lcp65Ab2-RA | 1..315 | 17..331 | 1575 | 100 | Plus |
| CG10533-PA | 303 | Lcp65Af-RA | 250..287 | 278..315 | 165 | 97.3 | Plus |
| CG18777-PA | 309 | CG18777-RA | 244..293 | 266..315 | 150 | 92 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:39:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp65Ab1-RA | 413 | CG32400-RA | 44..360 | 15..331 | 1585 | 100 | Plus |
| Lcp65Ab2-RA | 416 | CG18773-RA | 47..363 | 15..331 | 1585 | 100 | Plus |
| Cpr65Ax1-RA | 389 | CG34270-RA | 282..357 | 256..331 | 230 | 86.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6146720..6147036 | 15..331 | 1585 | 100 | Plus |
| 3L | 28110227 | 3L | 6149591..6149907 | 15..331 | 1585 | 100 | Plus |
| 3L | 28110227 | 3L | 6147563..6147638 | 331..256 | 230 | 86.8 | Minus |
| 3L | 28110227 | 3L | 6150434..6150509 | 331..256 | 230 | 86.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:39:39 has no hits.
BS18124.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:12:31 Download gff for
BS18124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18773-PA | 1..315 | 17..331 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:21:07 Download gff for
BS18124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ab1-RA | 44..369 | 15..339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:23 Download gff for
BS18124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ab2-RA | 47..372 | 15..339 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:23 Download gff for
BS18124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6146720..6147045 | 15..339 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:21:07 Download gff for
BS18124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6139820..6140145 | 15..339 | 99 | | Plus |
BS18124.3prime Sequence
345 bp (345 high quality bases) assembled on 2007-06-06
> BS18124.3prime
ATGGTCTAGAAAGCTTTTAACCTACTGGTGCCACGGGCAGATGGGCGCCC
TGGGGCTGGTATCCGTTCTCATCAGCCACGTATGTGATGGTGAACTTCTC
GCCGGTCTTCTCATCCACCCAGGTGAAGGATCCGTGGACGACAGCGGCCT
CGTTGTCAGTGCCAGCGTTCTTGAGGACACCCTCCTGTTTGATGCTGGTG
CCATCGCTGGTCTCCACGTCGGAGCTCCACTTCTCGGGCTCAACATCGGA
GACCTGCCTCACGATCTCGGCAAGGTTGGGGCGGGCCACTGCCATGGCGA
AGAGGGCGACGAAGACGATGAGGAATTTCATGTCGACTGATAACT
BS18124.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32400-PA | 315 | Lcp65Ab1-RA | 1..308 | 331..24 | 1540 | 100 | Minus |
| CG18773-PA | 315 | Lcp65Ab2-RA | 1..308 | 331..24 | 1540 | 100 | Minus |
| CG10533-PA | 303 | Lcp65Af-RA | 250..287 | 70..33 | 165 | 97.3 | Minus |
| CG18777-PA | 309 | CG18777-RA | 244..293 | 82..33 | 150 | 92 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:47:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp65Ab1-RA | 413 | CG32400-RA | 44..360 | 333..17 | 1555 | 99.4 | Minus |
| Lcp65Ab2-RA | 416 | CG18773-RA | 47..363 | 333..17 | 1555 | 99.4 | Minus |
| Cpr65Ax1-RA | 389 | CG34270-RA | 282..341 | 92..33 | 210 | 90 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:47:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6146720..6147036 | 333..17 | 1555 | 99.4 | Minus |
| 3L | 28110227 | 3L | 6149591..6149907 | 333..17 | 1555 | 99.4 | Minus |
| 3L | 28110227 | 3L | 6147579..6147638 | 33..92 | 210 | 90 | Plus |
| 3L | 28110227 | 3L | 6150450..6150509 | 33..92 | 210 | 90 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:47:39 has no hits.
BS18124.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:12:25 Download gff for
BS18124.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18773-PA | 1..315 | 17..331 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:03:21 Download gff for
BS18124.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ab1-RA | 36..369 | 9..339 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:28:12 Download gff for
BS18124.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ab2-RA | 39..372 | 9..339 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:28:12 Download gff for
BS18124.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6146712..6147045 | 9..339 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:03:21 Download gff for
BS18124.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6139812..6140145 | 9..339 | 97 | | Minus |
BS18124.pep Sequence
Translation from 16 to 330
> BS18124.pep
MKFLIVFVALFAMAVARPNLAEIVRQVSDVEPEKWSSDVETSDGTSIKQE
GVLKNAGTDNEAAVVHGSFTWVDEKTGEKFTITYVADENGYQPQGAHLPV
APVA*
BS18124.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp65Ab1-PA | 104 | CG32400-PA | 1..104 | 1..104 | 533 | 100 | Plus |
| Lcp65Ab2-PA | 104 | CG18773-PA | 1..104 | 1..104 | 533 | 100 | Plus |
| Cpr65Ax1-PA | 102 | CG34270-PA | 1..102 | 1..104 | 301 | 61.5 | Plus |
| Cpr65Ax2-PB | 102 | CG18777-PB | 1..102 | 1..104 | 301 | 61.5 | Plus |
| Cpr65Ax2-PA | 102 | CG18777-PA | 1..102 | 1..104 | 301 | 61.5 | Plus |
