Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
BS18125.3prime Sequence
348 bp (348 high quality bases) assembled on 2007-06-06
> BS18125.3prime
ATGGTCTAGAAAGCTTTCAGCCGGCCGGCCTGCGAACGCGTACGACGACC
CGTCGGCGATTGTCTCCGCTCTCACTTCGTCCTTCCCTGCCACGGCGGAT
GATCACGCGCCTGATGATGACACGGCGGCGTCGGTGCTTCTTCTTTGTGG
AGGCAGTGGTGGTCGTGGAGGATTCGGTGGTGGTGGTGGTGGACGAATCA
GTTGTTGTCGTAGCAGCCGTGGTGGTTGTGGCCGAAGCACTTGTGGAGGT
GGTGGTTGATGTGGAGGACACCTGGCTGCTGTGGAGGATCAGAACGACCA
GGACGGCCAGGGAGAGAGCTAGTAGAAAGCGCATGTCGACTGATAACT
BS18125.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:12:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32189-PA | 318 | CG32189-RA | 1..312 | 334..23 | 1535 | 99.6 | Minus |
CG32188-PA | 318 | CG32188-RA | 1..312 | 334..23 | 1435 | 98.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 14:17:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32189-RA | 430 | CG32189-RA | 29..353 | 339..15 | 1565 | 98.8 | Minus |
CG32188-RA | 349 | CG32188-RA | 27..343 | 339..23 | 1495 | 98.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 14:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17834822..17835146 | 15..339 | 1565 | 98.8 | Plus |
3L | 28110227 | 3L | 17833283..17833599 | 23..339 | 1495 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-05 14:16:56 has no hits.
BS18125.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:12:35 Download gff for
BS18125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-PA | 1..318 | 17..334 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:20 Download gff for
BS18125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-RA | 29..353 | 15..339 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:18:30 Download gff for
BS18125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-RA | 29..353 | 15..339 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:18:30 Download gff for
BS18125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17834822..17835146 | 15..339 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:20 Download gff for
BS18125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17827922..17828246 | 15..339 | 98 | | Plus |
BS18125.complete Sequence
350 bp assembled on 2009-10-21
GenBank Submission: KX800477
> BS18125.complete
GAAGTTATCAGTCGACATGCGCTTTCTACTAGCTCTCTCCCTGGCCGTCC
TGGTCGTTCTGATCCTCCACAGCAGCCAGGTGTCCTCCACATCAACCACC
ACCTCCACAAGTGCTTCGGCCACAACCACCACGGCTGCTACGACAACAAC
TGATTCGTCCACCACCACCACCACCGAATCCTCCACGACCACCACTGCCT
CCACAAAGAAGAAGCACCGACGCCGCCGTGTCATCATCAGGCGCGTGATC
ATCCGCCGTGGCAGGGAAGGACGAAGTGAGAGCGGAGACAATCGCCGACG
GGTCGTCGTACGCGTTCGCAGGACGGCCAACTGAAAGCTTTCTAGACCAT
BS18125.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:09:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32189-RA | 318 | CG32189-PA | 1..318 | 17..334 | 1590 | 100 | Plus |
CG32188-RA | 318 | CG32188-PA | 1..316 | 17..332 | 1520 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:09:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32189-RA | 430 | CG32189-RA | 29..353 | 12..336 | 1610 | 99.7 | Plus |
CG32188-RA | 349 | CG32188-RA | 27..347 | 12..332 | 1530 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:09:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17834822..17835146 | 336..12 | 1610 | 99.7 | Minus |
3L | 28110227 | 3L | 17833279..17833599 | 332..12 | 1530 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:09:01 has no hits.
BS18125.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:59 Download gff for
BS18125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-RA | 1..318 | 17..334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-21 17:47:00 Download gff for
BS18125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-RA | 34..350 | 17..333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:53 Download gff for
BS18125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-RA | 34..350 | 17..333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:59 Download gff for
BS18125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-RA | 29..353 | 12..336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:14 Download gff for
BS18125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-RA | 34..350 | 17..333 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:14 Download gff for
BS18125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17834825..17835141 | 17..333 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:53 Download gff for
BS18125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17827925..17828241 | 17..333 | 100 | | Minus |
BS18125.5prime Sequence
348 bp (348 high quality bases) assembled on 2007-06-06
> BS18125.5prime
GAAGTTATCACTCGACATGCGCTTTCTACTAGCTCTCTCCCTGGCCGTCC
TGGTCGTTCTGATCCTCCACAGCAGCCAGGTGTCCTCCACATCAACCACC
ACCTCCACAAGTGCTTCGGCCACAACCACCACGGCTGCTACGACAACAAC
TGATTCGTCCACCACCACCACCACCGAATCCTCCACGACCACCACTGCCT
CCACAAAGAAGAAGCACCGACGCCGCCGTGTCATCATCAGGCGCGTGATC
ATCCGCCGTGGCAGGGAAGGACGAAGTGAGAGCGGAGACAATCGCCGACG
GGTCGTCGTACGCGTTCGCAGGACGGCCAACTGAAAGCTTTCTAGACC
BS18125.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:12:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32189-PA | 318 | CG32189-RA | 1..318 | 17..334 | 1590 | 100 | Plus |
CG32188-PA | 318 | CG32188-RA | 1..316 | 17..332 | 1480 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:19:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32189-RA | 430 | CG32189-RA | 29..353 | 12..336 | 1610 | 99.7 | Plus |
CG32188-RA | 349 | CG32188-RA | 27..347 | 12..332 | 1530 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17834822..17835146 | 336..12 | 1610 | 99.7 | Minus |
3L | 28110227 | 3L | 17833279..17833599 | 332..12 | 1530 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:19:00 has no hits.
BS18125.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:12:40 Download gff for
BS18125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-PA | 1..318 | 17..334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:49:28 Download gff for
BS18125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-RA | 29..353 | 12..336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:53 Download gff for
BS18125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-RA | 29..353 | 12..336 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:53 Download gff for
BS18125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17834822..17835146 | 12..336 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:49:28 Download gff for
BS18125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17827922..17828246 | 12..336 | 99 | | Minus |
BS18125.pep Sequence
Translation from 16 to 333
> BS18125.pep
MRFLLALSLAVLVVLILHSSQVSSTSTTTSTSASATTTTAATTTTDSSTT
TTTESSTTTTASTKKKHRRRRVIIRRVIIRRGREGRSESGDNRRRVVVRV
RRTAN*
BS18125.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32189-PA | 105 | CG32189-PA | 1..105 | 1..105 | 493 | 100 | Plus |
CG32188-PA | 105 | CG32188-PA | 1..105 | 1..105 | 493 | 100 | Plus |
CG32071-PA | 150 | CG32071-PA | 11..115 | 1..95 | 199 | 49.5 | Plus |
CG32453-PB | 120 | CG32453-PB | 1..116 | 1..105 | 189 | 45.8 | Plus |
CG32453-PA | 120 | CG32453-PA | 1..116 | 1..105 | 189 | 45.8 | Plus |