Clone Sequence Records
BS18129.complete Sequence
479 bp assembled on 2010-02-09
GenBank Submission: KX804546
> BS18129.complete
GAAGTTATCAGTCGACATGAGTTTTCATTTTGCTGTACTGACCCTTATTT
TAACAGCCTTCACAGTTTCTCTGTGTGCTGAACAAAAAATTACAAAGAGT
GACGCAGGTGAAATACGAATTTTCAAACGTCTTATTCCTGCCGATGTTCT
ACGAGATTTTCCGGGAATGTGCTTTGCTTCAACTCGATGTGCCACTGTTG
AGCCTGGAAAGTCGTGGGACCTTACTCCATTCTGCGGTCGATCTACTTGT
GTTCAAAATGAGGAAAATGATGCAAAGCTATTCGAACTCGTAGAAGACTG
CGGCCCATTGCCACTGGCGAATGACAAATGTAAATTGGACACAGAGAAGA
CTAATAAAACCGCATCGTTTCCTTATTGCTGCCCCATCTTTACATGTGAC
CCCGGTGTTAAATTGGAATACCCCGAGATCGGAAAGGATAATGACAAAAA
GAATTCTGAGTGAAAGCTTTCTAGACCAT
BS18129.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:05:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31997-RB | 447 | CG31997-PB | 1..447 | 17..463 | 2235 | 100 | Plus |
| CG31997-RA | 447 | CG31997-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31997-RB | 729 | CG31997-RB | 158..604 | 17..463 | 2235 | 100 | Plus |
| CG31997-RA | 666 | CG31997-RA | 158..604 | 17..463 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 154779..154965 | 463..277 | 935 | 100 | Minus |
| 4 | 1348131 | 4 | 155765..155903 | 155..17 | 695 | 100 | Minus |
| 4 | 1348131 | 4 | 155026..155149 | 277..154 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:05:16 has no hits.
BS18129.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:01 Download gff for
BS18129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31997-RA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:49 Download gff for
BS18129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31997-RA | 150..595 | 17..462 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:51 Download gff for
BS18129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31997-RA | 158..603 | 17..462 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:01 Download gff for
BS18129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31997-RA | 150..596 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:26 Download gff for
BS18129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31997-RA | 158..603 | 17..462 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:26 Download gff for
BS18129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 154780..154965 | 277..462 | 100 | <- | Minus |
| 4 | 155027..155147 | 156..276 | 100 | <- | Minus |
| 4 | 155765..155903 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:51 Download gff for
BS18129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 175406..175591 | 277..462 | 100 | <- | Minus |
| arm_4 | 175653..175773 | 156..276 | 100 | <- | Minus |
| arm_4 | 176391..176529 | 17..155 | 100 | | Minus |
BS18129.3prime Sequence
477 bp (477 high quality bases) assembled on 2007-06-06
> BS18129.3prime
ATGGTCTAGAAAGCTTTCACTCTTAATTCTTTTTGTCATTATCCTTTCCG
ATCTCGGGGTATTCCAATTTAACACCGGGGTCACATGTAAAGATGGGGCA
GCAATAAGGAAACGATGCGGTTTTATTAGTCTTCTCTGTGTCCAATTTAC
ATTTGTCATTCGCCAGTGGCAATGGGCCGCAGTCTTCTACGAGTTCGAAT
AGCTTTGCATCATTTTCCTCATTTTGAACACAAGTAGATCGACCGCAGAA
TGGAGTAAGGTCCCACGACTTTCCAGGCTCAACAGTGGCACATCGAGTTG
AAGCAAAGCACATTCCCGGAAAATCTCGTAGAACATCGGCAGGAATAAGA
CGTTTGAAAATTCGTATTTCACCTGCGTCACTCTTTGTAATTTTTTGTTC
AGCACACAGAGAAACTGTGAAGGCTGTTAAAATAAGGGTCAGTACAGCAA
AATGAAAACTCATGTCGACTGATAACT
BS18129.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31997-PA | 447 | CG31997-RA | 1..439 | 463..25 | 2195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:10:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31997-RB | 729 | CG31997-RB | 158..604 | 463..17 | 2205 | 99.6 | Minus |
| CG31997-RA | 666 | CG31997-RA | 158..604 | 463..17 | 2205 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:09:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 154779..154965 | 17..203 | 905 | 98.9 | Plus |
| 4 | 1348131 | 4 | 155765..155903 | 325..463 | 695 | 100 | Plus |
| 4 | 1348131 | 4 | 155026..155149 | 203..326 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:09:59 has no hits.
BS18129.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:13 Download gff for
BS18129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31997-PA | 1..447 | 17..463 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:12:55 Download gff for
BS18129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31997-RA | 158..604 | 17..463 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:35 Download gff for
BS18129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31997-RA | 158..604 | 17..463 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:35 Download gff for
BS18129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 154779..154965 | 17..203 | 98 | <- | Plus |
| 4 | 155027..155147 | 204..324 | 100 | <- | Plus |
| 4 | 155765..155903 | 325..463 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:12:55 Download gff for
BS18129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 175405..175591 | 17..203 | 98 | <- | Plus |
| arm_4 | 175653..175773 | 204..324 | 100 | <- | Plus |
| arm_4 | 176391..176529 | 325..463 | 100 | | Plus |
BS18129.5prime Sequence
477 bp (477 high quality bases) assembled on 2007-06-06
> BS18129.5prime
GAAGTTATCACTCGACATGAGTTTTCATTTTGCTGTACTGACCCTTATTT
TAACAGCCTTCACAGTTTCTCTGTGTGCTGAACAAAAAATTACAAAGAGT
GACGCAGGTGAAATACGAATTTTCAAACGTCTTATTCCTGCCGATGTTCT
ACGAGATTTTCCGGGAATGTGCTTTGCTTCAACTCGATGTGCCACTGTTG
AGCCTGGAAAGTCGTGGGACCTTACTCCATTCTGCGGTCGATCTACTTGT
GTTCAAAATGAGGAAAATGATGCAAAGCTATTCGAACTCGTAGAAGACTG
CGGCCCATTGCCACTGGCGAATGACAAATGTAAATTGGACACAGAGAAGA
CTAATAAAACCGCATCGTTTCCTTATTGCTGCCCCATCTTTACATGTGAC
CCCGGTGTTAAATTGGAATACCCCGAGATCGGAAAGGATAATGACAAAAA
GAATTCTGAGTGAAAGCTTTCTAGACC
BS18129.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31997-PA | 447 | CG31997-RA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31997-RB | 729 | CG31997-RB | 158..604 | 17..463 | 2235 | 100 | Plus |
| CG31997-RA | 666 | CG31997-RA | 158..604 | 17..463 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 154779..154965 | 463..277 | 935 | 100 | Minus |
| 4 | 1348131 | 4 | 155765..155903 | 155..17 | 695 | 100 | Minus |
| 4 | 1348131 | 4 | 155026..155149 | 277..154 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:39:50 has no hits.
BS18129.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:17 Download gff for
BS18129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31997-PA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:21:08 Download gff for
BS18129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31997-RA | 158..604 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:59 Download gff for
BS18129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31997-RA | 158..604 | 17..463 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:59 Download gff for
BS18129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 154779..154965 | 277..463 | 100 | <- | Minus |
| 4 | 155027..155147 | 156..276 | 100 | <- | Minus |
| 4 | 155765..155903 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:21:08 Download gff for
BS18129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 175653..175773 | 156..276 | 100 | <- | Minus |
| arm_4 | 176391..176529 | 17..155 | 100 | | Minus |
| arm_4 | 175405..175591 | 277..463 | 100 | <- | Minus |
BS18129.pep Sequence
Translation from 16 to 462
> BS18129.pep
MSFHFAVLTLILTAFTVSLCAEQKITKSDAGEIRIFKRLIPADVLRDFPG
MCFASTRCATVEPGKSWDLTPFCGRSTCVQNEENDAKLFELVEDCGPLPL
ANDKCKLDTEKTNKTASFPYCCPIFTCDPGVKLEYPEIGKDNDKKNSE*
BS18129.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31997-PB | 148 | CG31997-PB | 1..148 | 1..148 | 802 | 100 | Plus |
| CG31997-PA | 148 | CG31997-PA | 1..148 | 1..148 | 802 | 100 | Plus |
