Clone BS18130 Report

Search the DGRC for BS18130

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:181
Well:30
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)37Ce-RA
Protein status:BS18130.pep: full length peptide match
Sequenced Size:590

Clone Sequence Records

BS18130.complete Sequence

590 bp assembled on 2010-02-09

GenBank Submission: KX806371

> BS18130.complete
GAAGTTATCAGTCGACATGCCCTCGGAAAACAGAATCAAAATCCTACCCA
AGGCGGTGGTCTGCGAGGAGAGCAGCCTGCGCGGTGACATCACCTTCTCG
TCGGGCTGTGTGGTTCATCCGAGTGCCACCGTTATCGCCGACGCAGGTCC
CATAATAATTGGGGAGAATTGCATCATAGAGGAATATGCCACCGTAGCTC
ACCGCTTGGAGCCGGGCGCCGTTTGGGATGTCAACAATATCCTGAGCATT
GGCACTCACAATGTCTTTGAAGTCGGCTGCCAAGTGGAAGCGGCCAAGAT
TGGCGATAAGAACGTCTTCGAGAGCAAGTGCTATGTGGGCCCCGGTGTCA
CTGTTTCCAGCGGTTGTGTGGTGGGAGCTGGAATAAAGATCCATGGTAGT
CAACGCCTGCCCGAAAACACGATTGTTTATGGAGAGCAGGGCCTGCAGCG
CGAGGCCATCGACAAGCAGGGATCGCAGACCCTGCAGATCGACTTCCTGC
GCAAGGTCCTGCCAAACTATCATCATCTACGCAAGCCCAACTACGATCCC
AAGAAGGCGCGCAGCGTGGTTTAGAAGCTTTCTAGACCAT

BS18130.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Ce-RA 558 CG17347-PA 1..558 17..574 2790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Ce-RA 708 CG17347-RA 78..635 17..574 2790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19132479..19133024 29..574 2730 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:05:25 has no hits.

BS18130.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:02 Download gff for BS18130.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Ce-RA 1..558 17..574 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:51 Download gff for BS18130.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Ce-RA 72..629 17..574 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:55 Download gff for BS18130.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Ce-RA 78..635 17..574 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:02 Download gff for BS18130.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Ce-RA 66..629 9..574 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:28 Download gff for BS18130.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Ce-RA 78..635 17..574 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:28 Download gff for BS18130.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19132400..19132416 17..33 100 -> Plus
2L 19132484..19133024 34..574 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:55 Download gff for BS18130.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19132400..19132416 17..33 100 -> Plus
arm_2L 19132484..19133024 34..574 100   Plus

BS18130.3prime Sequence

587 bp (587 high quality bases) assembled on 2007-06-06

> BS18130.3prime
ATGGTCTAGAAAGCTTCTCCCCTCGCGGCGCGCCTTCTTGGGATCGTAGT
TGGGCTTGCGTAGATGATGATAGTTTGGCAGGACCTTGCGCAGGAAGTCG
ATCTGCAGGGTCTGCGATCCCTGCTTGTCGATGGCCTCGCGCTGCAGGCC
CTGCTCTCCATAAACAATCGTGTTTTCGGGCAGGCGTTGACTACCATGGA
TCTTTATTCCAGCTCCCACCACACAACCGCTGGAAACAGTGACACCGGGG
CCCACATAGCACTTGCTCTCGAAGACGTTCTTATCGCCAATCTTGGCCGC
TTCCACTTGGCAGCCGACTTCAAAGACATTGTGAGTGCCAATGCTCAGGA
TATTGTTGACATCCCAAACGGCGCCCGGCTCCAAGCGGTGAGCTACGGTG
GCATATTCCTCTATGATGCAATTCTCCCCAATTATTATGGGACCTGCGTC
GGCGATAACGGTGGCACTCGGATGAACCACACAGCCCGACGAGAAGGTGA
TGTCACCGCGCAGGCTGCTCTCCTCGCAGACCACCGCCTTGGGTAGGATT
TTGATTCTGTTTTCCGAGGGCATGTCGACTGATAACT

BS18130.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17347-PA 558 CG17347-RA 1..546 573..28 2730 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Ce-RA 708 CG17347-RA 78..627 573..24 2735 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19132479..19133016 561..24 2675 99.8 Minus
Blast to na_te.dros performed on 2015-02-13 07:17:12 has no hits.

BS18130.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:22 Download gff for BS18130.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17347-PA 1..558 17..573 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:08:08 Download gff for BS18130.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)37Ce-RA 72..630 21..581 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:26 Download gff for BS18130.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)37Ce-RA 72..630 21..581 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:26 Download gff for BS18130.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19132484..19133019 21..556 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:08:08 Download gff for BS18130.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19132484..19133019 21..556 99   Minus

BS18130.5prime Sequence

588 bp (588 high quality bases) assembled on 2007-06-06

> BS18130.5prime
GAAGTTATCAGTCGACGTGCCCTCGGAAAACAGAATCAAAATCCTACCCA
AGGCGGTGGTCTGCGAGGAGAGCAGCCTGCGCGGTGACATCACCTTCTCG
TCGGGCTGTGTGGTTCATCCGAGTGCCACCGTTATCGCCGACGCAGGTCC
CATAATAATTGGGGAGAATTGCATCATAGAGGAATATGCCACCGTAGCTC
ACCGCTTGGAGCCGGGCGCCGTTTGGGATGTCAACAATATCCTGAGCATT
GGCACTCACAATGTCTTTGAAGTCGGCTGCCAAGTGGAAGCGGCCAAGAT
TGGCGATAAGAACGTCTTCGAGAGCAAGTGCTATGTGGGCCCCGGTGTCA
CTGTTTCCAGCGGTTGTGTGGTGGGAGCTGGAATAAAGATCCATGGTAGT
CAACGCCTGCCCGAAAACACGATTGTTTATGGAGAGCAGGGCCTGCAGCG
CGAGGCCATCGACAAGCAGGGATCGCAGACCCTGCAGATCGACTTCCTGC
GCAAGGTCCTGCCAAACTATCATCATCTACGCAAGCCCAACTACGATCCC
AAGAAGGCGCGCAGCGTGGTTTAGAAGCTTTCTAGACC

BS18130.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17347-PA 558 CG17347-RA 2..558 18..574 2785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Ce-RA 708 CG17347-RA 79..635 18..574 2785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19132479..19133024 29..574 2730 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:34:40 has no hits.

BS18130.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:27 Download gff for BS18130.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17347-PA 2..558 18..574 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:04:22 Download gff for BS18130.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)37Ce-RA 79..638 18..581 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:33 Download gff for BS18130.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)37Ce-RA 79..638 18..581 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:33 Download gff for BS18130.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19132401..19132416 18..33 100 -> Plus
2L 19132484..19133027 34..581 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:04:22 Download gff for BS18130.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19132401..19132416 18..33 100 -> Plus
arm_2L 19132484..19133027 34..581 99   Plus

BS18130.pep Sequence

Translation from 16 to 573

> BS18130.pep
MPSENRIKILPKAVVCEESSLRGDITFSSGCVVHPSATVIADAGPIIIGE
NCIIEEYATVAHRLEPGAVWDVNNILSIGTHNVFEVGCQVEAAKIGDKNV
FESKCYVGPGVTVSSGCVVGAGIKIHGSQRLPENTIVYGEQGLQREAIDK
QGSQTLQIDFLRKVLPNYHHLRKPNYDPKKARSVV*

BS18130.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Ce-PA 185 CG17347-PA 1..185 1..185 967 100 Plus