Clone Sequence Records
BS18130.complete Sequence
590 bp assembled on 2010-02-09
GenBank Submission: KX806371
> BS18130.complete
GAAGTTATCAGTCGACATGCCCTCGGAAAACAGAATCAAAATCCTACCCA
AGGCGGTGGTCTGCGAGGAGAGCAGCCTGCGCGGTGACATCACCTTCTCG
TCGGGCTGTGTGGTTCATCCGAGTGCCACCGTTATCGCCGACGCAGGTCC
CATAATAATTGGGGAGAATTGCATCATAGAGGAATATGCCACCGTAGCTC
ACCGCTTGGAGCCGGGCGCCGTTTGGGATGTCAACAATATCCTGAGCATT
GGCACTCACAATGTCTTTGAAGTCGGCTGCCAAGTGGAAGCGGCCAAGAT
TGGCGATAAGAACGTCTTCGAGAGCAAGTGCTATGTGGGCCCCGGTGTCA
CTGTTTCCAGCGGTTGTGTGGTGGGAGCTGGAATAAAGATCCATGGTAGT
CAACGCCTGCCCGAAAACACGATTGTTTATGGAGAGCAGGGCCTGCAGCG
CGAGGCCATCGACAAGCAGGGATCGCAGACCCTGCAGATCGACTTCCTGC
GCAAGGTCCTGCCAAACTATCATCATCTACGCAAGCCCAACTACGATCCC
AAGAAGGCGCGCAGCGTGGTTTAGAAGCTTTCTAGACCAT
BS18130.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)37Ce-RA | 558 | CG17347-PA | 1..558 | 17..574 | 2790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)37Ce-RA | 708 | CG17347-RA | 78..635 | 17..574 | 2790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19132479..19133024 | 29..574 | 2730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:05:25 has no hits.
BS18130.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:02 Download gff for
BS18130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Ce-RA | 1..558 | 17..574 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:51 Download gff for
BS18130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Ce-RA | 72..629 | 17..574 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:55 Download gff for
BS18130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Ce-RA | 78..635 | 17..574 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:02 Download gff for
BS18130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Ce-RA | 66..629 | 9..574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:28 Download gff for
BS18130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Ce-RA | 78..635 | 17..574 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:28 Download gff for
BS18130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19132400..19132416 | 17..33 | 100 | -> | Plus |
2L | 19132484..19133024 | 34..574 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:55 Download gff for
BS18130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19132400..19132416 | 17..33 | 100 | -> | Plus |
arm_2L | 19132484..19133024 | 34..574 | 100 | | Plus |
BS18130.3prime Sequence
587 bp (587 high quality bases) assembled on 2007-06-06
> BS18130.3prime
ATGGTCTAGAAAGCTTCTCCCCTCGCGGCGCGCCTTCTTGGGATCGTAGT
TGGGCTTGCGTAGATGATGATAGTTTGGCAGGACCTTGCGCAGGAAGTCG
ATCTGCAGGGTCTGCGATCCCTGCTTGTCGATGGCCTCGCGCTGCAGGCC
CTGCTCTCCATAAACAATCGTGTTTTCGGGCAGGCGTTGACTACCATGGA
TCTTTATTCCAGCTCCCACCACACAACCGCTGGAAACAGTGACACCGGGG
CCCACATAGCACTTGCTCTCGAAGACGTTCTTATCGCCAATCTTGGCCGC
TTCCACTTGGCAGCCGACTTCAAAGACATTGTGAGTGCCAATGCTCAGGA
TATTGTTGACATCCCAAACGGCGCCCGGCTCCAAGCGGTGAGCTACGGTG
GCATATTCCTCTATGATGCAATTCTCCCCAATTATTATGGGACCTGCGTC
GGCGATAACGGTGGCACTCGGATGAACCACACAGCCCGACGAGAAGGTGA
TGTCACCGCGCAGGCTGCTCTCCTCGCAGACCACCGCCTTGGGTAGGATT
TTGATTCTGTTTTCCGAGGGCATGTCGACTGATAACT
BS18130.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17347-PA | 558 | CG17347-RA | 1..546 | 573..28 | 2730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:17:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)37Ce-RA | 708 | CG17347-RA | 78..627 | 573..24 | 2735 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19132479..19133016 | 561..24 | 2675 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:17:12 has no hits.
BS18130.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:22 Download gff for
BS18130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17347-PA | 1..558 | 17..573 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:08:08 Download gff for
BS18130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Ce-RA | 72..630 | 21..581 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:26 Download gff for
BS18130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Ce-RA | 72..630 | 21..581 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:26 Download gff for
BS18130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19132484..19133019 | 21..556 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:08:08 Download gff for
BS18130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19132484..19133019 | 21..556 | 99 | | Minus |
BS18130.5prime Sequence
588 bp (588 high quality bases) assembled on 2007-06-06
> BS18130.5prime
GAAGTTATCAGTCGACGTGCCCTCGGAAAACAGAATCAAAATCCTACCCA
AGGCGGTGGTCTGCGAGGAGAGCAGCCTGCGCGGTGACATCACCTTCTCG
TCGGGCTGTGTGGTTCATCCGAGTGCCACCGTTATCGCCGACGCAGGTCC
CATAATAATTGGGGAGAATTGCATCATAGAGGAATATGCCACCGTAGCTC
ACCGCTTGGAGCCGGGCGCCGTTTGGGATGTCAACAATATCCTGAGCATT
GGCACTCACAATGTCTTTGAAGTCGGCTGCCAAGTGGAAGCGGCCAAGAT
TGGCGATAAGAACGTCTTCGAGAGCAAGTGCTATGTGGGCCCCGGTGTCA
CTGTTTCCAGCGGTTGTGTGGTGGGAGCTGGAATAAAGATCCATGGTAGT
CAACGCCTGCCCGAAAACACGATTGTTTATGGAGAGCAGGGCCTGCAGCG
CGAGGCCATCGACAAGCAGGGATCGCAGACCCTGCAGATCGACTTCCTGC
GCAAGGTCCTGCCAAACTATCATCATCTACGCAAGCCCAACTACGATCCC
AAGAAGGCGCGCAGCGTGGTTTAGAAGCTTTCTAGACC
BS18130.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17347-PA | 558 | CG17347-RA | 2..558 | 18..574 | 2785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)37Ce-RA | 708 | CG17347-RA | 79..635 | 18..574 | 2785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:34:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19132479..19133024 | 29..574 | 2730 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:34:40 has no hits.
BS18130.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:27 Download gff for
BS18130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17347-PA | 2..558 | 18..574 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:04:22 Download gff for
BS18130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Ce-RA | 79..638 | 18..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:33 Download gff for
BS18130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Ce-RA | 79..638 | 18..581 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:33 Download gff for
BS18130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19132401..19132416 | 18..33 | 100 | -> | Plus |
2L | 19132484..19133027 | 34..581 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:04:22 Download gff for
BS18130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19132401..19132416 | 18..33 | 100 | -> | Plus |
arm_2L | 19132484..19133027 | 34..581 | 99 | | Plus |
BS18130.pep Sequence
Translation from 16 to 573
> BS18130.pep
MPSENRIKILPKAVVCEESSLRGDITFSSGCVVHPSATVIADAGPIIIGE
NCIIEEYATVAHRLEPGAVWDVNNILSIGTHNVFEVGCQVEAAKIGDKNV
FESKCYVGPGVTVSSGCVVGAGIKIHGSQRLPENTIVYGEQGLQREAIDK
QGSQTLQIDFLRKVLPNYHHLRKPNYDPKKARSVV*
BS18130.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)37Ce-PA | 185 | CG17347-PA | 1..185 | 1..185 | 967 | 100 | Plus |