Clone Sequence Records
BS18132.complete Sequence
731 bp assembled on 2010-02-09
GenBank Submission: KX805752
> BS18132.complete
GAAGTTATCAGTCGACATGAGCGCGACCAGCACAATAGTTATGCCCGGTG
AGCGAATTGCGGCCATTGAGGAGCTGGCCAAGAGCAAGCGGGTGATACTC
GGACCGGGACTGCGGCGTCTGGATGACACGGTGGTGGCTAGCAAGGCGGG
CCCACTTCGACACAAGGAACCCGGCACCTTCTGGGTGGACAACTACCAGA
GAAGGTACATCCCGGCACGCGGGGATCTCATTCTGGGCATTGTGCGAGCC
AAGGCGGGCGATCTGTACCGCGTGGACATCGGAGCAACGGACACAGCCTC
CATATCGTATCTCGCCTTTGAGGCGGCCAGCAAGAAGAATCGCCCGGATC
TGATCCCCGGTGATCTGATTTACGCGAGAGTCCTGAATGCAAGCGCGGAC
ATTGAACCGGAGCTGGTCTGCGTCAACTCGGTGGGCAAAAGTGGCAAACT
GGGCGTCCTCACCGATGGATTCTTCTTCAAGTGCAGCCTGAATCTGGGAA
GGATGCTGCTGCGGGAAAACTGCCCTGTTCTCGCCGCTCTTACCCGGGAA
CTGCCCTACGAGATCGCTGTGGGAGTCAACGGCAGGATATGGTTGAAGGC
CCATTCCCTGAAAGAAACCGTGGCCCTCGCCAATGCCATTTCAGCGCTGG
AGCAATCGGGATGTGCGGAAATCGACAAAATATGTGGCAATCTCGGAGAC
TTCCTGCAGGCCTAGAAGCTTTCTAGACCAT
BS18132.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp40-RB | 699 | CG31938-PB | 1..699 | 17..715 | 3495 | 100 | Plus |
| Rrp40-RA | 699 | CG31938-PA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp40-RB | 1031 | CG31938-RB | 98..796 | 17..715 | 3495 | 100 | Plus |
| Rrp40-RA | 844 | CG31938-RA | 98..796 | 17..715 | 3495 | 100 | Plus |
| Eno-RE | 2664 | CG17654-RE | 110..362 | 715..463 | 1265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1728829..1729527 | 17..715 | 3495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:05:32 has no hits.
BS18132.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:03 Download gff for
BS18132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31938-RA | 1..699 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:53 Download gff for
BS18132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31938-RA | 95..793 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:59 Download gff for
BS18132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp40-RA | 98..796 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:04 Download gff for
BS18132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31938-RA | 88..793 | 9..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:32 Download gff for
BS18132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp40-RA | 98..796 | 17..715 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:32 Download gff for
BS18132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1728829..1729527 | 17..715 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:59 Download gff for
BS18132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1728829..1729527 | 17..715 | 100 | | Plus |
BS18132.3prime Sequence
729 bp (729 high quality bases) assembled on 2007-06-06
> BS18132.3prime
ATGGTCTAGAAAGCTTCTAGGCCTGCAGGAAGTCTCCGAGATTGCCACAT
ATTTTGTCGATTTCCGCACATCCCGATTGCTCCAGCGCTGAAATGGCATT
GGCGAGGGCCACGGTTTCTTTCAGGGAATGGGCCTTCAACCATATCCTGC
CGTTGACTCCCACAGCGATCTCGTAGGGCAGTTCCCGGGTAAGAGCGGCG
AGAACAGGGCAGTTTTCCCGCAGCAGCATCCTTCCCAGATTCAGGCTGCA
CTTGAAGAAGAATCCATCGGTGAGGACGCCCAGTTTGCCACTTTTGCCCA
CCGAGTTGACGCAGACCAGCTCCGGTTCAATGTCCGCGCTTGCATTCAGG
ACTCTCGCGTAAATCAGATCACCGGGGATCAGATCCGGGCGATTCTTCTT
GCTGGCCGCCTCAAAGGCGAGATACGATATGGAGGCTGTGTCCGTTGCTC
CGATGTCCACGCGGTACAGATCGCCCGCCTTGGCTCGCACAATGCCCAGA
ATGAGATCCCCGCGTGCCGGGATGTACCTTCTCTGGTAGTTGTCCACCCA
GAAGGTGCCGGGTTCCTTGTGTCGAAGTGGGCCCGCCTTGCTAGCCACCA
CCGTGTCATCCAGACGCCGCAGTCCCGGTCCGAGTATCACCCGCTTGCTC
TTGGCCAGCTCCTCAATGGCCGCAATTCGCTCACCGGGCATAACTATTGT
GCTGGTCGCGCTCATGTCGACTGATAACT
BS18132.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31938-PA | 699 | CG31938-RA | 1..699 | 715..17 | 3495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:31:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp40-RB | 1031 | CG31938-RB | 98..796 | 715..17 | 3495 | 100 | Minus |
| Rrp40-RA | 844 | CG31938-RA | 98..796 | 715..17 | 3495 | 100 | Minus |
| Eno-RE | 2664 | CG17654-RE | 110..362 | 17..269 | 1265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:31:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1728829..1729527 | 715..17 | 3495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:31:35 has no hits.
BS18132.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:31 Download gff for
BS18132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31938-PA | 1..699 | 17..715 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:55 Download gff for
BS18132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp40-RA | 91..800 | 11..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:22 Download gff for
BS18132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp40-RA | 91..800 | 11..723 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:22 Download gff for
BS18132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1728822..1729531 | 11..723 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:55 Download gff for
BS18132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1728822..1729531 | 11..723 | 99 | | Minus |
BS18132.5prime Sequence
729 bp (729 high quality bases) assembled on 2007-06-06
> BS18132.5prime
GAAGTTATCAGTCGACATGAGCGCGACCAGCACAATAGTTATGCCCGGTG
AGCGAATTGCGGCCATTGAGGAGCTGGCCAAGAGCAAGCGGGTGATACTC
GGACCGGGACTGCGGCGTCTGGATGACACGGTGGTGGCTAGCAAGGCGGG
CCCACTTCGACACAAGGAACCCGGCACCTTCTGGGTGGACAACTACCAGA
GAAGGTACATCCCGGCACGCGGGGATCTCATTCTGGGCATTGTGCGAGCC
AAGGCGGGCGATCTGTACCGCGTGGACATCGGAGCAACGGACACAGCCTC
CATATCGTATCTCGCCTTTGAGGCGGCCAGCAAGAAGAATCGCCCGGATC
TGATCCCCGGTGATCTGATTTACGCGAGAGTCCTGAATGCAAGCGCGGAC
ATTGAACCGGAGCTGGTCTGCGTCAACTCGGTGGGCAAAAGTGGCAAACT
GGGCGTCCTCACCGATGGATTCTTCTTCAAGTGCAGCCTGAATCTGGGAA
GGATGCTGCTGCGGGAAAACTGCCCTGTTCTCGCCGCTCTTACCCGGGAA
CTGCCCTACGAGATCGCTGTGGGAGTCAACGGCAGGATATGGTTGAAGGC
CCATTCCCTGAAAGAAACCGTGGCCCTCGCCAATGCCATTTCAGCGCTGG
AGCAATCGGGATGTGCGGAAATCGACAAAATATGTGGCAATCTCGGAGAC
TTCCTGCAGGCCTAGAAGCTTTCTAGACC
BS18132.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31938-PA | 699 | CG31938-RA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:19:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp40-RB | 1031 | CG31938-RB | 98..796 | 17..715 | 3495 | 100 | Plus |
| Rrp40-RA | 844 | CG31938-RA | 98..796 | 17..715 | 3495 | 100 | Plus |
| Eno-RE | 2664 | CG17654-RE | 110..362 | 715..463 | 1265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1728829..1729527 | 17..715 | 3495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:19:03 has no hits.
BS18132.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:35 Download gff for
BS18132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31938-PA | 1..699 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:49:30 Download gff for
BS18132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp40-RA | 91..800 | 9..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:01 Download gff for
BS18132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp40-RA | 91..800 | 9..721 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:01 Download gff for
BS18132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1728822..1729531 | 9..721 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:49:30 Download gff for
BS18132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1728822..1729531 | 9..721 | 99 | | Plus |
BS18132.pep Sequence
Translation from 16 to 714
> BS18132.pep
MSATSTIVMPGERIAAIEELAKSKRVILGPGLRRLDDTVVASKAGPLRHK
EPGTFWVDNYQRRYIPARGDLILGIVRAKAGDLYRVDIGATDTASISYLA
FEAASKKNRPDLIPGDLIYARVLNASADIEPELVCVNSVGKSGKLGVLTD
GFFFKCSLNLGRMLLRENCPVLAALTRELPYEIAVGVNGRIWLKAHSLKE
TVALANAISALEQSGCAEIDKICGNLGDFLQA*
BS18132.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp40-PB | 232 | CG31938-PB | 1..232 | 1..232 | 1176 | 100 | Plus |
| Rrp40-PA | 232 | CG31938-PA | 1..232 | 1..232 | 1176 | 100 | Plus |
