Clone Sequence Records
BS18134.complete Sequence
620 bp assembled on 2010-02-09
GenBank Submission: KX802989
> BS18134.complete
GAAGTTATCAGTCGACATGATGTTACTGCCTTCGGGGCGTTCGAATAGTG
ATGTCTATCCGCTACAAAATGCCGCAAACACAACAGCAACATCGACCGGA
GGAGCAACATCAGCTGGTGGCGCGGGTGGAGCAGGCGGAGTGGGAGGCGT
CTGTGGTGGCGTAGGAGCAACATCCAACCCCAAGCCCTTGCTACTGACAC
GAACATCATCGCCTCAATTGACAACATTGCCGACAACAAATGGCTCTGTT
GTCCATGCCACGCCCACCCGCTCCAACGGATGTCCGTTGACCCAATCCTC
CGGAATCCCAGTGACAATGGCAACAACAGCCACAGCAATGGCTACAGCAA
CACCAGACCCATCTGGATGTACGGAAGTGGAGGGTACAGCATCGACGGAG
CTGAGCACTGGGTTAGCAAATGAAACTAACTGCGGCACCGGGATCTATGG
GCCACTTTTGGGTCAAAGTCATGGGGGCGTCATCGCTGGCATGACCGAAA
ATTGGCCAGAAATTGATGGACACTTGGAGGCCATACAGGAAAAGCTCAAG
CCCGGCTGGAGTGTTCATGTGGGCAAGGAGGGGAGGCTCTACTATTGCAA
GTGAAAGCTTTCTAGACCAT
BS18134.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:22:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42788-RB | 4683 | CG42788-PB | 1..584 | 17..600 | 2920 | 100 | Plus |
CG42788-RC | 4680 | CG42788-PC | 1..584 | 17..600 | 2920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:22:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42788-RB | 6686 | CG42788-RB | 333..916 | 17..600 | 2920 | 100 | Plus |
CG42788-RC | 6683 | CG42788-RC | 333..916 | 17..600 | 2920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:22:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15111589..15112176 | 604..17 | 2940 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 04:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6858 | 309..407 | 130 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6825 | 309..355 | 127 | 74.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6784 | 309..356 | 123 | 72.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2607..2661 | 309..363 | 122 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6821..6876 | 309..367 | 117 | 69.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2430 | 57..114 | 116 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6839 | 320..439 | 114 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2489 | 81..239 | 109 | 55.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2414 | 57..116 | 108 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2396..2438 | 314..356 | 107 | 72.1 | Plus |
BS18134.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:07 Download gff for
BS18134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6934-RA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:29 Download gff for
BS18134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6934-RA | 330..916 | 17..603 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:45 Download gff for
BS18134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42788-RC | 331..915 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:56 Download gff for
BS18134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6934-RA | 330..916 | 17..603 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:52 Download gff for
BS18134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42788-RC | 333..917 | 17..603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:52 Download gff for
BS18134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15111590..15112176 | 17..603 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:45 Download gff for
BS18134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10937312..10937898 | 17..603 | 100 | | Minus |
BS18134.3prime Sequence
639 bp (639 high quality bases) assembled on 2007-06-06
> BS18134.3prime
CGTAAAGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTCACTCGCAATAG
TAGAGCCTCCCCTCCTTGCCCACATGAACACTCCAGCCGGGCTTGAGCTT
TTCCTGTATGGCCTCCAAGTGTCCATCAATTTCTGGCCAATTTTCGGTCA
TGCCAGCGATGACGCCCCCATGACTTTGACCCAAAAGTGGCCCATAGATC
CCGGTGCCGCAGTTAGTTTCATTTGCTAACCCAGTGCTCAGCTCCGTCGA
TGCTGTACCCTCCACTTCCGTACATCCAGATGGGTCTGGTGTTGCTGTAG
CCATTGCTGTGGCTGTTGTTGCCATTGTCACTGGGATTCCGGAGGATTGG
GTCAACGGACATCCGTTGGAGCGGGTGGGCGTGGCATGGACAACAGAGCC
ATTTGTTGTCGGCAATGTTGTCAATTGAGGCGATGATGTTCGTGTCAGTA
GCAAGGGCTTGGGGTTGGATGTTGCTCCTACGCCACCACAGACGCCTCCC
ACTCCGCCTGCTCCACCCGCGCCACCAGCTGATGTTGCTCCTCCGGTCGA
TGTTGCTGTTGTGTTTGCGGCATTTTGTAGCGGATAGACATCACTATTCG
AACGCCCCGAAGGCAGTAACATCATGTCGACTGATAACT
BS18134.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6934-PA | 588 | CG6934-RA | 1..588 | 625..38 | 2915 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42788-RB | 6686 | CG42788-RB | 333..914 | 625..44 | 2910 | 100 | Minus |
CG42788-RC | 6683 | CG42788-RC | 333..914 | 625..44 | 2910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15111589..15112176 | 38..625 | 2925 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-10 16:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6858 | 333..235 | 130 | 61.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6825 | 333..287 | 127 | 74.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6784 | 333..286 | 123 | 72.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2607..2661 | 333..279 | 122 | 69.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6821..6876 | 333..275 | 117 | 69.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2430 | 585..528 | 116 | 69 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6839 | 322..203 | 114 | 62.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2489 | 561..403 | 109 | 55.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2414 | 585..526 | 108 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2396..2438 | 328..286 | 107 | 72.1 | Minus |
BS18134.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:49 Download gff for
BS18134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6934-PA | 1..588 | 38..625 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:04:24 Download gff for
BS18134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42788-RC | 328..912 | 44..630 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:34 Download gff for
BS18134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42788-RC | 330..914 | 44..630 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:34 Download gff for
BS18134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15111586..15112179 | 32..630 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:04:24 Download gff for
BS18134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10937308..10937901 | 32..630 | 98 | | Plus |
BS18134.5prime Sequence
618 bp (618 high quality bases) assembled on 2007-06-06
> BS18134.5prime
GAAGTTATCAGTCGACATGATGTTACTGCCTTCGGGGCGTTCGAATAGTG
ATGTCTATCCGCTACAAAATGCCGCAAACACAACAGCAACATCGACCGGA
GGAGCAACATCAGCTGGTGGCGCGGGTGGAGCAGGCGGAGTGGGAGGCGT
CTGTGGTGGCGTAGGAGCAACATCCAACCCCAAGCCCTTGCTACTGACAC
GAACATCATCGCCTCAATTGACAACATTGCCGACAACAAATGGCTCTGTT
GTCCATGCCACGCCCACCCGCTCCAACGGATGTCCGTTGACCCAATCCTC
CGGAATCCCAGTGACAATGGCAACAACAGCCACAGCAATGGCTACAGCAA
CACCAGACCCATCTGGATGTACGGAAGTGGAGGGTACAGCATCGACGGAG
CTGAGCACTGGGTTAGCAAATGAAACTAACTGCGGCACCGGGATCTATGG
GCCACTTTTGGGTCAAAGTCATGGGGGCGTCATCGCTGGCATGACCGAAA
ATTGGCCAGAAATTGATGGACACTTGGAGGCCATACAGGAAAAGCTCAAG
CCCGGCTGGAGTGTTCATGTGGGCAAGGAGGGGAGGCTCTACTATTGCAA
GTGAAAGCTTTCTAGACC
BS18134.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6934-PA | 588 | CG6934-RA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42788-RB | 6686 | CG42788-RB | 333..916 | 17..600 | 2920 | 100 | Plus |
CG42788-RC | 6683 | CG42788-RC | 333..916 | 17..600 | 2920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:48:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15111589..15112176 | 604..17 | 2940 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 15:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6858 | 309..407 | 130 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6825 | 309..355 | 127 | 74.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6784 | 309..356 | 123 | 72.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2607..2661 | 309..363 | 122 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6821..6876 | 309..367 | 117 | 69.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2430 | 57..114 | 116 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6839 | 320..439 | 114 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2489 | 81..239 | 109 | 55.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2414 | 57..116 | 108 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2396..2438 | 314..356 | 107 | 72.1 | Plus |
BS18134.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:54 Download gff for
BS18134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6934-PA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:58:04 Download gff for
BS18134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42788-RC | 328..914 | 12..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:07:38 Download gff for
BS18134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42788-RC | 330..916 | 12..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:07:38 Download gff for
BS18134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15111586..15112179 | 12..610 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:58:04 Download gff for
BS18134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10937308..10937901 | 12..610 | 99 | | Minus |
BS18134.pep Sequence
Translation from 16 to 603
> BS18134.pep
MMLLPSGRSNSDVYPLQNAANTTATSTGGATSAGGAGGAGGVGGVCGGVG
ATSNPKPLLLTRTSSPQLTTLPTTNGSVVHATPTRSNGCPLTQSSGIPVT
MATTATAMATATPDPSGCTEVEGTASTELSTGLANETNCGTGIYGPLLGQ
SHGGVIAGMTENWPEIDGHLEAIQEKLKPGWSVHVGKEGRLYYCK*
BS18134.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42788-PC | 1559 | CG42788-PC | 1..194 | 1..194 | 1026 | 100 | Plus |
CG42788-PB | 1560 | CG42788-PB | 1..194 | 1..194 | 1026 | 100 | Plus |