Clone BS18134 Report

Search the DGRC for BS18134

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:181
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG6934-RA
Protein status:BS18134.pep: Imported from assembly
Sequenced Size:620

Clone Sequence Records

BS18134.complete Sequence

620 bp assembled on 2010-02-09

GenBank Submission: KX802989

> BS18134.complete
GAAGTTATCAGTCGACATGATGTTACTGCCTTCGGGGCGTTCGAATAGTG
ATGTCTATCCGCTACAAAATGCCGCAAACACAACAGCAACATCGACCGGA
GGAGCAACATCAGCTGGTGGCGCGGGTGGAGCAGGCGGAGTGGGAGGCGT
CTGTGGTGGCGTAGGAGCAACATCCAACCCCAAGCCCTTGCTACTGACAC
GAACATCATCGCCTCAATTGACAACATTGCCGACAACAAATGGCTCTGTT
GTCCATGCCACGCCCACCCGCTCCAACGGATGTCCGTTGACCCAATCCTC
CGGAATCCCAGTGACAATGGCAACAACAGCCACAGCAATGGCTACAGCAA
CACCAGACCCATCTGGATGTACGGAAGTGGAGGGTACAGCATCGACGGAG
CTGAGCACTGGGTTAGCAAATGAAACTAACTGCGGCACCGGGATCTATGG
GCCACTTTTGGGTCAAAGTCATGGGGGCGTCATCGCTGGCATGACCGAAA
ATTGGCCAGAAATTGATGGACACTTGGAGGCCATACAGGAAAAGCTCAAG
CCCGGCTGGAGTGTTCATGTGGGCAAGGAGGGGAGGCTCTACTATTGCAA
GTGAAAGCTTTCTAGACCAT

BS18134.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG42788-RB 4683 CG42788-PB 1..584 17..600 2920 100 Plus
CG42788-RC 4680 CG42788-PC 1..584 17..600 2920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG42788-RB 6686 CG42788-RB 333..916 17..600 2920 100 Plus
CG42788-RC 6683 CG42788-RC 333..916 17..600 2920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15111589..15112176 604..17 2940 100 Minus
Blast to na_te.dros performed 2014-11-28 04:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6858 309..407 130 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6825 309..355 127 74.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6784 309..356 123 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2607..2661 309..363 122 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6821..6876 309..367 117 69.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2374..2430 57..114 116 69 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6839 320..439 114 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2331..2489 81..239 109 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2356..2414 57..116 108 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2396..2438 314..356 107 72.1 Plus

BS18134.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:07 Download gff for BS18134.complete
Subject Subject Range Query Range Percent Splice Strand
CG6934-RA 1..588 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:29 Download gff for BS18134.complete
Subject Subject Range Query Range Percent Splice Strand
CG6934-RA 330..916 17..603 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:45 Download gff for BS18134.complete
Subject Subject Range Query Range Percent Splice Strand
CG42788-RC 331..915 17..603 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:56 Download gff for BS18134.complete
Subject Subject Range Query Range Percent Splice Strand
CG6934-RA 330..916 17..603 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:52 Download gff for BS18134.complete
Subject Subject Range Query Range Percent Splice Strand
CG42788-RC 333..917 17..603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:52 Download gff for BS18134.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15111590..15112176 17..603 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:45 Download gff for BS18134.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10937312..10937898 17..603 100   Minus

BS18134.3prime Sequence

639 bp (639 high quality bases) assembled on 2007-06-06

> BS18134.3prime
CGTAAAGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTCACTCGCAATAG
TAGAGCCTCCCCTCCTTGCCCACATGAACACTCCAGCCGGGCTTGAGCTT
TTCCTGTATGGCCTCCAAGTGTCCATCAATTTCTGGCCAATTTTCGGTCA
TGCCAGCGATGACGCCCCCATGACTTTGACCCAAAAGTGGCCCATAGATC
CCGGTGCCGCAGTTAGTTTCATTTGCTAACCCAGTGCTCAGCTCCGTCGA
TGCTGTACCCTCCACTTCCGTACATCCAGATGGGTCTGGTGTTGCTGTAG
CCATTGCTGTGGCTGTTGTTGCCATTGTCACTGGGATTCCGGAGGATTGG
GTCAACGGACATCCGTTGGAGCGGGTGGGCGTGGCATGGACAACAGAGCC
ATTTGTTGTCGGCAATGTTGTCAATTGAGGCGATGATGTTCGTGTCAGTA
GCAAGGGCTTGGGGTTGGATGTTGCTCCTACGCCACCACAGACGCCTCCC
ACTCCGCCTGCTCCACCCGCGCCACCAGCTGATGTTGCTCCTCCGGTCGA
TGTTGCTGTTGTGTTTGCGGCATTTTGTAGCGGATAGACATCACTATTCG
AACGCCCCGAAGGCAGTAACATCATGTCGACTGATAACT

BS18134.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6934-PA 588 CG6934-RA 1..588 625..38 2915 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG42788-RB 6686 CG42788-RB 333..914 625..44 2910 100 Minus
CG42788-RC 6683 CG42788-RC 333..914 625..44 2910 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15111589..15112176 38..625 2925 99.8 Plus
Blast to na_te.dros performed 2015-02-10 16:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6858 333..235 130 61.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6825 333..287 127 74.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6784 333..286 123 72.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2607..2661 333..279 122 69.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6821..6876 333..275 117 69.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2374..2430 585..528 116 69 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6839 322..203 114 62.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2331..2489 561..403 109 55.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2356..2414 585..526 108 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2396..2438 328..286 107 72.1 Minus

BS18134.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:49 Download gff for BS18134.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6934-PA 1..588 38..625 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:04:24 Download gff for BS18134.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42788-RC 328..912 44..630 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:34 Download gff for BS18134.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42788-RC 330..914 44..630 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:34 Download gff for BS18134.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15111586..15112179 32..630 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:04:24 Download gff for BS18134.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10937308..10937901 32..630 98   Plus

BS18134.5prime Sequence

618 bp (618 high quality bases) assembled on 2007-06-06

> BS18134.5prime
GAAGTTATCAGTCGACATGATGTTACTGCCTTCGGGGCGTTCGAATAGTG
ATGTCTATCCGCTACAAAATGCCGCAAACACAACAGCAACATCGACCGGA
GGAGCAACATCAGCTGGTGGCGCGGGTGGAGCAGGCGGAGTGGGAGGCGT
CTGTGGTGGCGTAGGAGCAACATCCAACCCCAAGCCCTTGCTACTGACAC
GAACATCATCGCCTCAATTGACAACATTGCCGACAACAAATGGCTCTGTT
GTCCATGCCACGCCCACCCGCTCCAACGGATGTCCGTTGACCCAATCCTC
CGGAATCCCAGTGACAATGGCAACAACAGCCACAGCAATGGCTACAGCAA
CACCAGACCCATCTGGATGTACGGAAGTGGAGGGTACAGCATCGACGGAG
CTGAGCACTGGGTTAGCAAATGAAACTAACTGCGGCACCGGGATCTATGG
GCCACTTTTGGGTCAAAGTCATGGGGGCGTCATCGCTGGCATGACCGAAA
ATTGGCCAGAAATTGATGGACACTTGGAGGCCATACAGGAAAAGCTCAAG
CCCGGCTGGAGTGTTCATGTGGGCAAGGAGGGGAGGCTCTACTATTGCAA
GTGAAAGCTTTCTAGACC

BS18134.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6934-PA 588 CG6934-RA 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG42788-RB 6686 CG42788-RB 333..916 17..600 2920 100 Plus
CG42788-RC 6683 CG42788-RC 333..916 17..600 2920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15111589..15112176 604..17 2940 100 Minus
Blast to na_te.dros performed 2015-02-13 15:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6858 309..407 130 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6825 309..355 127 74.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6784 309..356 123 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2607..2661 309..363 122 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6821..6876 309..367 117 69.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2374..2430 57..114 116 69 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6839 320..439 114 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2331..2489 81..239 109 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2356..2414 57..116 108 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2396..2438 314..356 107 72.1 Plus

BS18134.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:13:54 Download gff for BS18134.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6934-PA 1..588 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:58:04 Download gff for BS18134.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42788-RC 328..914 12..600 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:07:38 Download gff for BS18134.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42788-RC 330..916 12..600 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:07:38 Download gff for BS18134.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15111586..15112179 12..610 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:58:04 Download gff for BS18134.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10937308..10937901 12..610 99   Minus

BS18134.pep Sequence

Translation from 16 to 603

> BS18134.pep
MMLLPSGRSNSDVYPLQNAANTTATSTGGATSAGGAGGAGGVGGVCGGVG
ATSNPKPLLLTRTSSPQLTTLPTTNGSVVHATPTRSNGCPLTQSSGIPVT
MATTATAMATATPDPSGCTEVEGTASTELSTGLANETNCGTGIYGPLLGQ
SHGGVIAGMTENWPEIDGHLEAIQEKLKPGWSVHVGKEGRLYYCK*

BS18134.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG42788-PC 1559 CG42788-PC 1..194 1..194 1026 100 Plus
CG42788-PB 1560 CG42788-PB 1..194 1..194 1026 100 Plus