Clone Sequence Records
BS18140.complete Sequence
476 bp assembled on 2010-02-09
GenBank Submission: KX804260
> BS18140.complete
GAAGTTATCAGTCGACATGTTGCGCATACGCCGTGTGAGCCACGTGCAGC
TGCTCGTTCTAATGGCAATCGTTGTGGTGGTGACGGCAAAACAGGAAAGT
TCAACGCGTCAATTCGGCGGTGGCCAGAACTTCGGCAACGGCCTGGGCCC
CTCCTTTGGTGGCGTGGGCGCTGGTGGTCTAGGGCCTGGGGCCGGGTTTG
GACCCGGTTCCGCAGCCGGATATCCGGGACAAGGCGGCTACGGACCAGCG
CAGCAGCCGGGCTGCCCGCTGTGCGATTCGTCGGTTTACTCGTACTGCTC
GCACAAGATGGTACACGATGCCTGTTGCTGCGATTTTCCAGGCGGTGCCC
CGCAGTTGAGACCGCCCCAGTGTTTGTACTACGACTGCTCGCTGCTTTAT
GCCAAATCCTGTTACGAGCACGCCCTCATCAAGAACTGCTGCTGCAATAA
TCCCTACTGAAAGCTTTCTAGACCAT
BS18140.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12540-RA | 444 | CG12540-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12540-RA | 772 | CG12540-RA | 113..556 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14496539..14496781 | 100..342 | 1200 | 99.6 | Plus |
| X | 23542271 | X | 14496903..14497024 | 339..460 | 610 | 100 | Plus |
| X | 23542271 | X | 14496247..14496334 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:05:41 has no hits.
BS18140.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:05 Download gff for
BS18140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12540-RA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:54 Download gff for
BS18140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12540-RA | 116..553 | 22..459 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:04 Download gff for
BS18140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12540-RA | 116..553 | 22..459 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:05 Download gff for
BS18140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12540-RA | 106..557 | 12..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:36 Download gff for
BS18140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12540-RA | 118..555 | 22..459 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:36 Download gff for
BS18140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14496252..14496334 | 22..104 | 100 | -> | Plus |
| X | 14496544..14496780 | 105..341 | 100 | -> | Plus |
| X | 14496906..14497023 | 342..459 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:04 Download gff for
BS18140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14390285..14390367 | 22..104 | 100 | -> | Plus |
| arm_X | 14390577..14390813 | 105..341 | 100 | -> | Plus |
| arm_X | 14390939..14391056 | 342..459 | 100 | | Plus |
BS18140.3prime Sequence
474 bp (474 high quality bases) assembled on 2007-06-06
> BS18140.3prime
ATGGTCTAGAAAGCTTTCAGCATGGATTATTGCAGCAGCAGTTCTTGATG
AGGGCGTGCTCGTAACAGGATTTGGCATAAAGCAGCGAGCAGTCGTAGTA
CAAACACTGGGGCGGTCTCAACTGCGGGGCACCGCCTGGAAAATCGCAGC
AACAGGCATCGTGTACCATCTTGTGCGAGCAGTACGAGTAAACCGACGAA
TCGCACAGCGGGCAGCCCGGCTGCTGCGCTGGTCCGTAGCCGCCTTGTCC
CGGATATCCGGCTGCGGAACCGGGTCCAAACCCGGCCCCAGGCCCTAGAC
CACCAGCGCCCACGCCACCAAAGGAGGGGCCCAGGCCGTTGCCGAAGTTC
TGGCCACCGCCGAATTGACGCGTTGAACTTTCCTGTTTTGCCGTCACCAC
CACAACGATTGCCATTAGAACGAGCAGCTGCACGTGGCTCACACGGCGTA
TGCGCAACATGTCGACTGATAACT
BS18140.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:14:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12540-PA | 444 | CG12540-RA | 1..437 | 460..24 | 2185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:48:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12540-RA | 772 | CG12540-RA | 113..556 | 460..17 | 2190 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14496539..14496781 | 377..135 | 1200 | 99.6 | Minus |
| X | 23542271 | X | 14496903..14497024 | 138..17 | 580 | 98.4 | Minus |
| X | 23542271 | X | 14496247..14496334 | 460..373 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:48:31 has no hits.
BS18140.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:14:17 Download gff for
BS18140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12540-PA | 1..444 | 17..460 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:58:07 Download gff for
BS18140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12540-RA | 106..557 | 13..465 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:08:36 Download gff for
BS18140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12540-RA | 108..559 | 13..465 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:08:36 Download gff for
BS18140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14496242..14496334 | 373..465 | 97 | -> | Minus |
| X | 14496544..14496780 | 136..372 | 100 | -> | Minus |
| X | 14496906..14497027 | 13..135 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:58:07 Download gff for
BS18140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14390275..14390367 | 373..465 | 97 | -> | Minus |
| arm_X | 14390577..14390813 | 136..372 | 100 | -> | Minus |
| arm_X | 14390939..14391060 | 13..135 | 96 | | Minus |
BS18140.5prime Sequence
474 bp (474 high quality bases) assembled on 2007-06-06
> BS18140.5prime
GAAGTTATCATTCGACATGTTGCGCATACGCCGTGTGAGCCACGTGCAGC
TGCTCGTTCTAATGGCAATCGTTGTGGTGGTGACGGCAAAACAGGAAAGT
TCAACGCGTCAATTCGGCGGTGGCCAGAACTTCGGCAACGGCCTGGGCCC
CTCCTTTGGTGGCGTGGGCGCTGGTGGTCTAGGGCCTGGGGCCGGGTTTG
GACCCGGTTCCGCAGCCGGATATCCGGGACAAGGCGGCTACGGACCAGCG
CAGCAGCCGGGCTGCCCGCTGTGCGATTCGTCGGTTTACTCGTACTGCTC
GCACAAGATGGTACACGATGCCTGTTGCTGCGATTTTCCAGGCGGTGCCC
CGCAGTTGAGACCGCCCCAGTGTTTGTACTACGACTGCTCGCTGCTTTAT
GCCAAATCCTGTTACGAGCACGCCCTCATCAAGAACTGCTGCTGCAATAA
TCCCTACTGAAAGCTTTCTAGACC
BS18140.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:14:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12540-PA | 444 | CG12540-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 14:18:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12540-RA | 772 | CG12540-RA | 106..556 | 10..460 | 2225 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 14:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14496539..14496781 | 100..342 | 1200 | 99.6 | Plus |
| X | 23542271 | X | 14496903..14497024 | 339..460 | 610 | 100 | Plus |
| X | 23542271 | X | 14496240..14496334 | 10..104 | 445 | 97.9 | Plus |
Blast to na_te.dros performed on 2015-02-05 14:18:46 has no hits.
BS18140.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:14:23 Download gff for
BS18140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12540-PA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:27 Download gff for
BS18140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12540-RA | 104..557 | 10..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:18:44 Download gff for
BS18140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12540-RA | 106..559 | 10..464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:18:44 Download gff for
BS18140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14496240..14496334 | 10..104 | 97 | -> | Plus |
| X | 14496544..14496780 | 105..341 | 100 | -> | Plus |
| X | 14496906..14497027 | 342..464 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:27 Download gff for
BS18140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14390273..14390367 | 10..104 | 97 | -> | Plus |
| arm_X | 14390577..14390813 | 105..341 | 100 | -> | Plus |
| arm_X | 14390939..14391060 | 342..464 | 98 | | Plus |
BS18140.pep Sequence
Translation from 16 to 459
> BS18140.pep
MLRIRRVSHVQLLVLMAIVVVVTAKQESSTRQFGGGQNFGNGLGPSFGGV
GAGGLGPGAGFGPGSAAGYPGQGGYGPAQQPGCPLCDSSVYSYCSHKMVH
DACCCDFPGGAPQLRPPQCLYYDCSLLYAKSCYEHALIKNCCCNNPY*
BS18140.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12540-PA | 147 | CG12540-PA | 1..147 | 1..147 | 828 | 100 | Plus |
