Clone BS18146 Report

Search the DGRC for BS18146

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:181
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG32111-RA
Protein status:BS18146.pep: full length peptide match
Sequenced Size:545

Clone Sequence Records

BS18146.complete Sequence

545 bp assembled on 2010-02-09

GenBank Submission: KX803366

> BS18146.complete
GAAGTTATCAGTCGACATGATGCTGTTGGCGACTTTGTGTTTGCTCATGC
CGGTAGCCTTGTGCCCAGGTCTTTGGTCCTTGGTCCTTGTTACTGGGTCC
TTGGTCCTCGGTCCTTGGTCCATGCAGTGGCTGGCTTTGATGTTTCGCCA
GGATGATGAATTATATTTGACATCTATGTGCTTGGGCGGCGGTCCTCCTC
CTCCTGCTCCGTCGTTGCTAACATGTGTGTACCCTGCCACATTTGATGCC
ACTCAAACTACAAATACATACGTGTGCATGCGCACCAAAAAACCACCCAG
TTATCCATGCACCCACCCACCTACACTCGCGTCTGATGAGAGCCGCACTT
GGATATGTTTATTTTACTGTCAAAACATTAAAGTAAACTCCCGCCGATGC
CGCCGCACGGGGTTGATTGTTATCAGGGGGCGGTGTCGACAGCGTTGTAC
CTATGCGAGGGTGGAAAACCGATGGAAGGACCATGCCGGGTACTTCGTCC
TCTTGGCCACCTTCGGTTTGACTCCGTAGAAGCTTTCTAGACCAT

BS18146.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 03:01:41 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 03:01:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12642154..12642667 17..530 2570 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:01:40 has no hits.

BS18146.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:36 Download gff for BS18146.complete
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:18 Download gff for BS18146.complete
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 1197..1709 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:18 Download gff for BS18146.complete
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 1199..1711 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:36 Download gff for BS18146.complete
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 1197..1710 17..530 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:03 Download gff for BS18146.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12642154..12642666 17..529 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:03 Download gff for BS18146.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12642154..12642666 17..529 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:18 Download gff for BS18146.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12635254..12635766 17..529 100   Plus

BS18146.3prime Sequence

543 bp (543 high quality bases) assembled on 2007-06-06

> BS18146.3prime
ATGGTCTAGAAAGCTTCTACCGATTCGGGGCGAAGGTGGCCAAGAGGACG
AAGTACCCGGCATGGTCCTTCCATCGGTTTTCCACCCTCGCATAGGTACA
ACGCTGTCGACACCGCCCCCTGATAACAATCAACCCCGTGCGGCGGCATC
GGCGGGAGTTTACTTTAATGTTTTGACAGTAAAATAAACATATCCAAGTG
CGGCTCTCATCAGACGCGAGTGTAGGTGGGTGGGTGCATGGATAACTGGG
TGGTTTTTTGGTGCGCATGCACACGTATGTATTTGTAGTTTGAGTGGCAT
CAAATGTGGCAGGGTACACACATGTTAGCAACGACGGAGCAGGAGGAGGA
GGACCGCCGCCCAAGCACATAGATGTCAAATATAATTCATCATCCTGGCG
AAACATCAAAGCCAGCCACTGCATGGACCAAGGACCGAGGACCAAGGACC
CAGTAACAAGGACCAAGGACCAAAGACCTGGGCACAAGGCTACCGGCATG
AGCAAACACAAAGTCGCCAACAGCATCATGTCGACTGATAACT

BS18146.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG32111-PA 513 CG32111-RA 1..499 529..31 2495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 22:40:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12642154..12642652 529..31 2495 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:40:09 has no hits.

BS18146.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:15:08 Download gff for BS18146.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32111-PA 1..505 25..529 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:09:07 Download gff for BS18146.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 1199..1703 25..529 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:24 Download gff for BS18146.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12642154..12642658 25..529 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:24 Download gff for BS18146.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12642154..12642658 25..529 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:09:07 Download gff for BS18146.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12635254..12635758 25..529 99   Minus

BS18146.5prime Sequence

543 bp (543 high quality bases) assembled on 2007-06-06

> BS18146.5prime
GAAGTTATCACTCTACATGATGCTGTTGGCGACTTTGTGTTTGCTCATGC
CGGTAGCCTTGTGCCCAGGTCTTTGGTCCTTGGTCCTTGTTACTGGGTCC
TTGGTCCTCGGTCCTTGGTCCATGCAGTGGCTGGCTTTGATGTTTCGCCA
GGATGATGAATTATATTTGACATCTATGTGCTTGGGCGGCGGTCCTCCTC
CTCCTGCTCCGTCGTTGCTAACATGTGTGTACCCTGCCACATTTGATGCC
ACTCAAACTACAAATACATACGTGTGCATGCGCACCAAAAAACCACCCAG
TTATCCATGCACCCACCCACCTACACTCGCGTCTGATGAGAGCCGCACTT
GGATATGTTTATTTTACTGTCAAAACATTAAAGTAAACTCCCGCCGATGC
CGCCGCACGGGGTTGATTGTTATCAGGGGGCGGTGTCGACAGCGTTGTAC
CTATGCGAGGGTGGAAAACCGATGGAAGGACCATGCCGGGTACTTCGTCC
TCTTGGCCACCTTCGGTTTGACTCCGTAGAAGCTTTCTAGACC

BS18146.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG32111-PA 513 CG32111-RA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 17:05:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12642154..12642667 17..530 2570 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:05:32 has no hits.

BS18146.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:15:12 Download gff for BS18146.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32111-PA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:57:20 Download gff for BS18146.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 1192..1712 10..530 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:48 Download gff for BS18146.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12642147..12642667 10..530 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:48 Download gff for BS18146.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12642147..12642667 10..530 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:57:20 Download gff for BS18146.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12635247..12635767 10..530 99   Plus

BS18146.pep Sequence

Translation from 16 to 528

> BS18146.pep
MMLLATLCLLMPVALCPGLWSLVLVTGSLVLGPWSMQWLALMFRQDDELY
LTSMCLGGGPPPPAPSLLTCVYPATFDATQTTNTYVCMRTKKPPSYPCTH
PPTLASDESRTWICLFYCQNIKVNSRRCRRTGLIVIRGRCRQRCTYARVE
NRWKDHAGYFVLLATFGLTP*
Sequence BS18146.pep has no blast hits.