Clone Sequence Records
BS18147.3prime Sequence
750 bp (750 high quality bases) assembled on 2007-06-06
> BS18147.3prime
TCCCTTTAGGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTCAACCCTTG
AAGGCGGGCAGCCCGAACTGCTCCGGCTTGAAGTCCGCCAACGAGGCCAG
CACTTGTGTGGCGTGCGAGGTCTTTTCCTGGGACAGTCGTGGGTCCGGCA
CCATCACCACCTGCATTCCGGCGCTGTTGGCAGCCGTCACGCCGTTCGGC
GAGTCCTCGAACACCAGGCAGTCGGACGGTTTGGGCGGCACACCGAATCT
GCCGGCGGCCACTAGGAAAATGTCGGGCGCAGGCTTGCCGTTGACCACCT
CCTTGTCCGACGAACCGCACACCTTGTGGTTAAACAGGGAGAACAGCTCC
CGATGTTGGGCCGTCTTCAGCTCGACCATGTCGGCGCCGGAGCTGGTGGC
CAAGCAAAAGGGTACCTTGTTGGCGTGCAGGTGACGCAGCAGGCGCTCAG
CACCTGGCATCAACTGGGCGTTCCGCATCAGGATCTCGGTGTTGGCGCGC
TGCTGGCGTGCGTACTCCTCCCACGACATCGGCAGCTCGTAGTGCTCGAC
CATGAACCGGGCCAGCGGTTCCGTCTGCAGGCCCATGACCTGCTCCTTGA
TCTCAAAGGGATATGTCTTGCCGTAGGGCTCGAGGATCATTTCGGTGGCC
ACAGTATAAAGGCGTTCGGTGTCCAGCAGCAGACCGTCCATGTCGAAGAC
GCAGTGCGTCACCTTTCGCAGCACTTTGTTGGCCATGTCGACTGATAACT
BS18147.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:15:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15441-PA | 696 | Gs1l-RA | 1..688 | 736..49 | 3440 | 100 | Minus |
CG15441-PB | 696 | Gs1l-RB | 282..688 | 455..49 | 2035 | 100 | Minus |
CG15441-PB | 696 | Gs1l-RB | 1..68 | 736..669 | 340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1l-RA | 984 | CG15441-RA | 152..852 | 740..40 | 3460 | 99.6 | Minus |
Gs1l-RB | 1038 | CG15441-RB | 435..850 | 455..40 | 2050 | 99.5 | Minus |
Gs1l-RB | 1038 | CG15441-RB | 150..221 | 740..669 | 345 | 98.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:05:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4455325..4455740 | 40..455 | 2050 | 99.5 | Plus |
2L | 23513712 | 2L | 4456112..4456333 | 452..673 | 1110 | 100 | Plus |
2L | 23513712 | 2L | 4456386..4456453 | 673..740 | 325 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:05:07 has no hits.
BS18147.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:15:17 Download gff for
BS18147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15441-PA | 1..696 | 41..736 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:46:16 Download gff for
BS18147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1l-RA | 152..855 | 35..740 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:41:02 Download gff for
BS18147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1l-RA | 152..855 | 35..740 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:41:02 Download gff for
BS18147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4455322..4455738 | 35..453 | 99 | <- | Plus |
2L | 4456114..4456332 | 454..672 | 100 | <- | Plus |
2L | 4456386..4456453 | 673..740 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:46:16 Download gff for
BS18147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4455322..4455738 | 35..453 | 99 | <- | Plus |
arm_2L | 4456114..4456332 | 454..672 | 100 | <- | Plus |
arm_2L | 4456386..4456453 | 673..740 | 98 | | Plus |
BS18147.5prime Sequence
726 bp (726 high quality bases) assembled on 2007-06-06
> BS18147.5prime
GAAGTTATCACTCTACATGGCCAACAAAGTGCTGCGAAAGGTGACGCACT
GCGTCTTCGACATGGACGGTCTGCTGCTGGACACCGAACGCCTTTATACT
GTGGCCACCGAAATGATCCTCGAGCCCTACGGCAAGACATATCCCTTTGA
GATCAAGGAGCAGGTCATGGGCCTGCAGACGGAACCGCTGGCCCGGTTCA
TGGTCGAGCACTACGAGCTGCCGATGTCGTGGGAGGAGTACGCACGCCAG
CAGCGCGCCAACACCGAGATCCTGATGCGGAACGCCCAGTTGATGCCAGG
TGCTGAGCGCCTGCTGCGTCACCTGCACGCCAACAAGGTACCCTTTTGCT
TGGCCACCAGCTCCGGCGCCGACATGGTCGAGCTGAAGACGGCCCAACAT
CGGGAGCTGTTCTCCCTGTTTAACCACAAGGTGTGCGGTTCGTCGGACAA
GGAGGTGGTCAACGGCAAGCCTGCGCCCGACATTTTCCTAGTGGCCGCCG
GCAGATTCGGTGTGCCGCCCAAACCGTCCGACTGCCTGGTGTTCGAGGAC
TCGCCGAACGGCGTGACGGCTGCCAACAGCGCCGGAATGCAGGTGGTGAT
GGTGCCGGACCCACGACTGTCCCAGGAAAAGACCTCGCACGCCACACAAG
TGCTGGCCTCGTTGGCGGACTTCAAGCCGGAGCAGTTCGGGCTGCCCGCC
TTCACGGATTGAAAGCTTTCTAGACC
BS18147.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:15:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15441-PA | 696 | Gs1l-RA | 1..696 | 17..712 | 3480 | 100 | Plus |
CG15441-PB | 696 | Gs1l-RB | 282..696 | 298..712 | 2075 | 100 | Plus |
CG15441-PB | 696 | Gs1l-RB | 1..68 | 17..84 | 340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1l-RA | 984 | CG15441-RA | 156..852 | 17..713 | 3485 | 100 | Plus |
Gs1l-RB | 1038 | CG15441-RB | 435..850 | 298..713 | 2080 | 100 | Plus |
Gs1l-RB | 1038 | CG15441-RB | 154..221 | 17..84 | 340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:52:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4455325..4455740 | 713..298 | 2080 | 100 | Minus |
2L | 23513712 | 2L | 4456112..4456333 | 301..80 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 4456386..4456449 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:52:34 has no hits.
BS18147.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:15:22 Download gff for
BS18147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15441-PA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:22:31 Download gff for
BS18147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1l-RA | 156..855 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:25:01 Download gff for
BS18147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1l-RA | 156..855 | 17..718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:25:01 Download gff for
BS18147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4455322..4455738 | 300..718 | 99 | <- | Minus |
2L | 4456114..4456332 | 81..299 | 100 | <- | Minus |
2L | 4456386..4456449 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:22:31 Download gff for
BS18147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4455322..4455738 | 300..718 | 99 | <- | Minus |
arm_2L | 4456114..4456332 | 81..299 | 100 | <- | Minus |
arm_2L | 4456386..4456449 | 17..80 | 100 | | Minus |
BS18147.complete Sequence
728 bp assembled on 2010-02-09
GenBank Submission: KX804696
> BS18147.complete
GAAGTTATCAGTCGACATGGCCAACAAAGTGCTGCGAAAGGTGACGCACT
GCGTCTTCGACATGGACGGTCTGCTGCTGGACACCGAACGCCTTTATACT
GTGGCCACCGAAATGATCCTCGAGCCCTACGGCAAGACATATCCCTTTGA
GATCAAGGAGCAGGTCATGGGCCTGCAGACGGAACCGCTGGCCCGGTTCA
TGGTCGAGCACTACGAGCTGCCGATGTCGTGGGAGGAGTACGCACGCCAG
CAGCGCGCCAACACCGAGATCCTGATGCGGAACGCCCAGTTGATGCCAGG
TGCTGAGCGCCTGCTGCGTCACCTGCACGCCAACAAGGTACCCTTTTGCT
TGGCCACCAGCTCCGGCGCCGACATGGTCGAGCTGAAGACGGCCCAACAT
CGGGAGCTGTTCTCCCTGTTTAACCACAAGGTGTGCGGTTCGTCGGACAA
GGAGGTGGTCAACGGCAAGCCTGCGCCCGACATTTTCCTAGTGGCCGCCG
GCAGATTCGGTGTGCCGCCCAAACCGTCCGACTGCCTGGTGTTCGAGGAC
TCGCCGAACGGCGTGACGGCTGCCAACAGCGCCGGAATGCAGGTGGTGAT
GGTGCCGGACCCACGACTGTCCCAGGAAAAGACCTCGCACGCCACACAAG
TGCTGGCCTCGTTGGCGGACTTCAAGCCGGAGCAGTTCGGGCTGCCCGCC
TTCACGGATTGAAAGCTTTCTAGACCAT
BS18147.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:21:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1l-RA | 696 | CG15441-PA | 1..696 | 17..712 | 3480 | 100 | Plus |
Gs1l-RB | 696 | CG15441-PB | 282..696 | 298..712 | 2075 | 100 | Plus |
Gs1l-RB | 696 | CG15441-PB | 1..68 | 17..84 | 340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:21:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1l-RA | 984 | CG15441-RA | 152..852 | 13..713 | 3490 | 99.9 | Plus |
Gs1l-RB | 1038 | CG15441-RB | 435..850 | 298..713 | 2080 | 100 | Plus |
Gs1l-RB | 1038 | CG15441-RB | 150..221 | 13..84 | 345 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:21:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4455325..4455740 | 713..298 | 2080 | 100 | Minus |
2L | 23513712 | 2L | 4456112..4456333 | 301..80 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 4456386..4456453 | 80..13 | 325 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:21:48 has no hits.
BS18147.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:56 Download gff for
BS18147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1l-RA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:24 Download gff for
BS18147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1l-RA | 171..865 | 17..711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:37 Download gff for
BS18147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1l-RA | 156..850 | 17..711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:15 Download gff for
BS18147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1l-RA | 171..865 | 17..711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:41 Download gff for
BS18147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1l-RA | 156..850 | 17..711 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:41 Download gff for
BS18147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4455327..4455738 | 300..711 | 100 | <- | Minus |
2L | 4456114..4456332 | 81..299 | 100 | <- | Minus |
2L | 4456386..4456449 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:37 Download gff for
BS18147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4455327..4455738 | 300..711 | 100 | <- | Minus |
arm_2L | 4456114..4456332 | 81..299 | 100 | <- | Minus |
arm_2L | 4456386..4456449 | 17..80 | 100 | | Minus |
BS18147.pep Sequence
Translation from 16 to 711
> BS18147.pep
MANKVLRKVTHCVFDMDGLLLDTERLYTVATEMILEPYGKTYPFEIKEQV
MGLQTEPLARFMVEHYELPMSWEEYARQQRANTEILMRNAQLMPGAERLL
RHLHANKVPFCLATSSGADMVELKTAQHRELFSLFNHKVCGSSDKEVVNG
KPAPDIFLVAAGRFGVPPKPSDCLVFEDSPNGVTAANSAGMQVVMVPDPR
LSQEKTSHATQVLASLADFKPEQFGLPAFTD*
BS18147.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1l-PA | 231 | CG15441-PA | 1..231 | 1..231 | 1203 | 100 | Plus |
Gs1l-PB | 231 | CG15441-PB | 1..231 | 1..231 | 917 | 77.1 | Plus |
CG31924-PB | 236 | CG31924-PB | 16..234 | 9..227 | 532 | 48.9 | Plus |
CG5565-PA | 240 | CG5565-PA | 10..231 | 9..229 | 461 | 40.5 | Plus |
CG5556-PB | 299 | CG5556-PB | 27..246 | 9..230 | 292 | 31.1 | Plus |