Clone BS18147 Report

Search the DGRC for BS18147

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:181
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptGs1l-RA
Protein status:BS18147.pep: full length peptide match
Sequenced Size:728

Clone Sequence Records

BS18147.3prime Sequence

750 bp (750 high quality bases) assembled on 2007-06-06

> BS18147.3prime
TCCCTTTAGGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTCAACCCTTG
AAGGCGGGCAGCCCGAACTGCTCCGGCTTGAAGTCCGCCAACGAGGCCAG
CACTTGTGTGGCGTGCGAGGTCTTTTCCTGGGACAGTCGTGGGTCCGGCA
CCATCACCACCTGCATTCCGGCGCTGTTGGCAGCCGTCACGCCGTTCGGC
GAGTCCTCGAACACCAGGCAGTCGGACGGTTTGGGCGGCACACCGAATCT
GCCGGCGGCCACTAGGAAAATGTCGGGCGCAGGCTTGCCGTTGACCACCT
CCTTGTCCGACGAACCGCACACCTTGTGGTTAAACAGGGAGAACAGCTCC
CGATGTTGGGCCGTCTTCAGCTCGACCATGTCGGCGCCGGAGCTGGTGGC
CAAGCAAAAGGGTACCTTGTTGGCGTGCAGGTGACGCAGCAGGCGCTCAG
CACCTGGCATCAACTGGGCGTTCCGCATCAGGATCTCGGTGTTGGCGCGC
TGCTGGCGTGCGTACTCCTCCCACGACATCGGCAGCTCGTAGTGCTCGAC
CATGAACCGGGCCAGCGGTTCCGTCTGCAGGCCCATGACCTGCTCCTTGA
TCTCAAAGGGATATGTCTTGCCGTAGGGCTCGAGGATCATTTCGGTGGCC
ACAGTATAAAGGCGTTCGGTGTCCAGCAGCAGACCGTCCATGTCGAAGAC
GCAGTGCGTCACCTTTCGCAGCACTTTGTTGGCCATGTCGACTGATAACT

BS18147.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG15441-PA 696 Gs1l-RA 1..688 736..49 3440 100 Minus
CG15441-PB 696 Gs1l-RB 282..688 455..49 2035 100 Minus
CG15441-PB 696 Gs1l-RB 1..68 736..669 340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1l-RA 984 CG15441-RA 152..852 740..40 3460 99.6 Minus
Gs1l-RB 1038 CG15441-RB 435..850 455..40 2050 99.5 Minus
Gs1l-RB 1038 CG15441-RB 150..221 740..669 345 98.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4455325..4455740 40..455 2050 99.5 Plus
2L 23513712 2L 4456112..4456333 452..673 1110 100 Plus
2L 23513712 2L 4456386..4456453 673..740 325 98.5 Plus
Blast to na_te.dros performed on 2015-02-11 22:05:07 has no hits.

BS18147.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:15:17 Download gff for BS18147.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15441-PA 1..696 41..736 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:46:16 Download gff for BS18147.3prime
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 152..855 35..740 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:41:02 Download gff for BS18147.3prime
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 152..855 35..740 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:41:02 Download gff for BS18147.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4455322..4455738 35..453 99 <- Plus
2L 4456114..4456332 454..672 100 <- Plus
2L 4456386..4456453 673..740 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:46:16 Download gff for BS18147.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4455322..4455738 35..453 99 <- Plus
arm_2L 4456114..4456332 454..672 100 <- Plus
arm_2L 4456386..4456453 673..740 98   Plus

BS18147.5prime Sequence

726 bp (726 high quality bases) assembled on 2007-06-06

> BS18147.5prime
GAAGTTATCACTCTACATGGCCAACAAAGTGCTGCGAAAGGTGACGCACT
GCGTCTTCGACATGGACGGTCTGCTGCTGGACACCGAACGCCTTTATACT
GTGGCCACCGAAATGATCCTCGAGCCCTACGGCAAGACATATCCCTTTGA
GATCAAGGAGCAGGTCATGGGCCTGCAGACGGAACCGCTGGCCCGGTTCA
TGGTCGAGCACTACGAGCTGCCGATGTCGTGGGAGGAGTACGCACGCCAG
CAGCGCGCCAACACCGAGATCCTGATGCGGAACGCCCAGTTGATGCCAGG
TGCTGAGCGCCTGCTGCGTCACCTGCACGCCAACAAGGTACCCTTTTGCT
TGGCCACCAGCTCCGGCGCCGACATGGTCGAGCTGAAGACGGCCCAACAT
CGGGAGCTGTTCTCCCTGTTTAACCACAAGGTGTGCGGTTCGTCGGACAA
GGAGGTGGTCAACGGCAAGCCTGCGCCCGACATTTTCCTAGTGGCCGCCG
GCAGATTCGGTGTGCCGCCCAAACCGTCCGACTGCCTGGTGTTCGAGGAC
TCGCCGAACGGCGTGACGGCTGCCAACAGCGCCGGAATGCAGGTGGTGAT
GGTGCCGGACCCACGACTGTCCCAGGAAAAGACCTCGCACGCCACACAAG
TGCTGGCCTCGTTGGCGGACTTCAAGCCGGAGCAGTTCGGGCTGCCCGCC
TTCACGGATTGAAAGCTTTCTAGACC

BS18147.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15441-PA 696 Gs1l-RA 1..696 17..712 3480 100 Plus
CG15441-PB 696 Gs1l-RB 282..696 298..712 2075 100 Plus
CG15441-PB 696 Gs1l-RB 1..68 17..84 340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1l-RA 984 CG15441-RA 156..852 17..713 3485 100 Plus
Gs1l-RB 1038 CG15441-RB 435..850 298..713 2080 100 Plus
Gs1l-RB 1038 CG15441-RB 154..221 17..84 340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4455325..4455740 713..298 2080 100 Minus
2L 23513712 2L 4456112..4456333 301..80 1110 100 Minus
2L 23513712 2L 4456386..4456449 80..17 320 100 Minus
Blast to na_te.dros performed on 2015-02-12 23:52:34 has no hits.

BS18147.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:15:22 Download gff for BS18147.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15441-PA 1..696 17..712 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:22:31 Download gff for BS18147.5prime
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 156..855 17..718 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:25:01 Download gff for BS18147.5prime
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 156..855 17..718 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:25:01 Download gff for BS18147.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4455322..4455738 300..718 99 <- Minus
2L 4456114..4456332 81..299 100 <- Minus
2L 4456386..4456449 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:22:31 Download gff for BS18147.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4455322..4455738 300..718 99 <- Minus
arm_2L 4456114..4456332 81..299 100 <- Minus
arm_2L 4456386..4456449 17..80 100   Minus

BS18147.complete Sequence

728 bp assembled on 2010-02-09

GenBank Submission: KX804696

> BS18147.complete
GAAGTTATCAGTCGACATGGCCAACAAAGTGCTGCGAAAGGTGACGCACT
GCGTCTTCGACATGGACGGTCTGCTGCTGGACACCGAACGCCTTTATACT
GTGGCCACCGAAATGATCCTCGAGCCCTACGGCAAGACATATCCCTTTGA
GATCAAGGAGCAGGTCATGGGCCTGCAGACGGAACCGCTGGCCCGGTTCA
TGGTCGAGCACTACGAGCTGCCGATGTCGTGGGAGGAGTACGCACGCCAG
CAGCGCGCCAACACCGAGATCCTGATGCGGAACGCCCAGTTGATGCCAGG
TGCTGAGCGCCTGCTGCGTCACCTGCACGCCAACAAGGTACCCTTTTGCT
TGGCCACCAGCTCCGGCGCCGACATGGTCGAGCTGAAGACGGCCCAACAT
CGGGAGCTGTTCTCCCTGTTTAACCACAAGGTGTGCGGTTCGTCGGACAA
GGAGGTGGTCAACGGCAAGCCTGCGCCCGACATTTTCCTAGTGGCCGCCG
GCAGATTCGGTGTGCCGCCCAAACCGTCCGACTGCCTGGTGTTCGAGGAC
TCGCCGAACGGCGTGACGGCTGCCAACAGCGCCGGAATGCAGGTGGTGAT
GGTGCCGGACCCACGACTGTCCCAGGAAAAGACCTCGCACGCCACACAAG
TGCTGGCCTCGTTGGCGGACTTCAAGCCGGAGCAGTTCGGGCTGCCCGCC
TTCACGGATTGAAAGCTTTCTAGACCAT

BS18147.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1l-RA 696 CG15441-PA 1..696 17..712 3480 100 Plus
Gs1l-RB 696 CG15441-PB 282..696 298..712 2075 100 Plus
Gs1l-RB 696 CG15441-PB 1..68 17..84 340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1l-RA 984 CG15441-RA 152..852 13..713 3490 99.9 Plus
Gs1l-RB 1038 CG15441-RB 435..850 298..713 2080 100 Plus
Gs1l-RB 1038 CG15441-RB 150..221 13..84 345 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4455325..4455740 713..298 2080 100 Minus
2L 23513712 2L 4456112..4456333 301..80 1110 100 Minus
2L 23513712 2L 4456386..4456453 80..13 325 98.5 Minus
Blast to na_te.dros performed on 2014-11-28 04:21:48 has no hits.

BS18147.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:56 Download gff for BS18147.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 1..696 17..712 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:24 Download gff for BS18147.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 171..865 17..711 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:37 Download gff for BS18147.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 156..850 17..711 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:15 Download gff for BS18147.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 171..865 17..711 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:41 Download gff for BS18147.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 156..850 17..711 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:41 Download gff for BS18147.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4455327..4455738 300..711 100 <- Minus
2L 4456114..4456332 81..299 100 <- Minus
2L 4456386..4456449 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:37 Download gff for BS18147.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4455327..4455738 300..711 100 <- Minus
arm_2L 4456114..4456332 81..299 100 <- Minus
arm_2L 4456386..4456449 17..80 100   Minus

BS18147.pep Sequence

Translation from 16 to 711

> BS18147.pep
MANKVLRKVTHCVFDMDGLLLDTERLYTVATEMILEPYGKTYPFEIKEQV
MGLQTEPLARFMVEHYELPMSWEEYARQQRANTEILMRNAQLMPGAERLL
RHLHANKVPFCLATSSGADMVELKTAQHRELFSLFNHKVCGSSDKEVVNG
KPAPDIFLVAAGRFGVPPKPSDCLVFEDSPNGVTAANSAGMQVVMVPDPR
LSQEKTSHATQVLASLADFKPEQFGLPAFTD*

BS18147.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1l-PA 231 CG15441-PA 1..231 1..231 1203 100 Plus
Gs1l-PB 231 CG15441-PB 1..231 1..231 917 77.1 Plus
CG31924-PB 236 CG31924-PB 16..234 9..227 532 48.9 Plus
CG5565-PA 240 CG5565-PA 10..231 9..229 461 40.5 Plus
CG5556-PB 299 CG5556-PB 27..246 9..230 292 31.1 Plus