Clone Sequence Records
BS18159.complete Sequence
749 bp assembled on 2010-02-09
GenBank Submission: KX802260
> BS18159.complete
GAAGTTATCAGTCGACATGCACCTGAAACCACGGATAAAAGTATGCCAAG
CGATTCTGGGACATTGTCGATCCTTTGGAACGAGTCCTCCCGCTAATCAG
TCGTTCAGGAAGTGGTACCAGCACCTGTGGACCACGGAGCGCACAAACTT
GCCGCCATACAACCATTTCACCCAGATTGGTGACCCTGTTCTTAGGCAAC
AAGCGGCTTTGGTGCCCAAGGAGCACATGGCTAGCCCCGAGATTAAGGCC
ATCGTCGAGCGGATGGTCAAGGTGCTAAGGAAGTTCGACTGCGTCGGCAT
TGCGGCTCCTCAGATTGGAGTATCGCTCAGGATCATAGCAATGGAGTTCA
AGGGACGGATCCGAAAGGAGCTGCCCGAGGCCGTTTACCAAGCCCGACAA
ATGTCCGAGTTGCCACTGACTATTTTCATCAATCCCGTCCTGACGGTGAC
CAACTACGCGAAGCTGAAGCATCCAGAAGGATGCATGAGTGTGCGAGGTT
ACTCTGCCGAAGTGGAGCGTTTCGAAGGTGTAAAGCTAACAGGCCTTGAC
CAACTAGGAAACCAAAGCGAACTGGCTCTGAGTGGTTGGAATGCCCGGAT
AGCGCAGCACGAAATGGATCACCTGGAGGGAAAACTATACACCGATCACA
TGGACCGCTCAACCTTTGCGTGCACCTGCTGGGAGGCGGTTAACACGAAA
TCCGGACGCGTGGAGATACCCTTCTACAAGTAGAAGCTTTCTAGACCAT
BS18159.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:03:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31278-RA | 717 | CG31278-PA | 1..717 | 17..733 | 3585 | 100 | Plus |
CG31278-RB | 438 | CG31278-PB | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31278-RA | 872 | CG31278-RA | 79..795 | 17..733 | 3585 | 100 | Plus |
CG31278-RB | 883 | CG31278-RB | 79..806 | 17..733 | 3440 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10707858..10708262 | 421..17 | 2025 | 100 | Minus |
3R | 32079331 | 3R | 10707475..10707786 | 733..422 | 1560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:03:51 has no hits.
BS18159.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:56 Download gff for
BS18159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-RA | 1..717 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:32 Download gff for
BS18159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-RA | 65..781 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:11 Download gff for
BS18159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-RA | 79..795 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:56 Download gff for
BS18159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-RA | 58..781 | 8..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:46 Download gff for
BS18159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-RA | 79..795 | 17..733 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:46 Download gff for
BS18159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10707475..10707786 | 422..733 | 100 | <- | Minus |
3R | 10707858..10708262 | 17..421 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:11 Download gff for
BS18159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6533197..6533508 | 422..733 | 100 | <- | Minus |
arm_3R | 6533580..6533984 | 17..421 | 100 | | Minus |
BS18159.3prime Sequence
747 bp (747 high quality bases) assembled on 2007-06-06
> BS18159.3prime
ATGGTCTAGAAAGCTTCTACTTGTAGAAGGGTATCTCCACGCGTCCGGAT
TTCGTGTTAACCGCCTCCCAGCAGGTGCACGCAAAGGTTGAGCGGTCCAT
GTGATCGGTGTATAGTTTTCCCTCCAGGTGATCCATTTCGTGCTGCGCTA
TCCGGGCATTCCAACCACTCAGAGCCAGTTCGCTTTGGTTTCCTAGTTGG
TCAAGGCCTGTTAGCTTTACACCTTCGAAACGCTCCACTTCGGCAGAGTA
ACCTCGCACACTCATGCATCCTTCTGGATGCTTCAGCTTCGCGTAGTTGG
TCACCGTCAGGACGGGATTGATGAAAATAGTCAGTGGCAACTCGGACATT
TGTCGGGCTTGGTAAACGGCCTCGGGCAGCTCCTTTCGGATCCGTCCCTT
GAACTCCATTGCTATGATCCTGAGCGATACTCCAATCTGAGGAGCCGCAA
TGCCGACGCAGTCGAACTTCCTTAGCACCTTGACCATCCGCTCGACGATG
GCCTTAATCTCGGGGCTAGCCATGTGCTCCTTGGGCACCAAAGCCGCTTG
TTGCCTAAGAACAGGGTCACCAATCTGGGTGAAATGGTTGTATGGCGGCA
AGTTTGTGCGCTCCGTGGTCCACAGGTGCTGGTACCACTTCCTGAACGAC
TGATTAGCGGGAGGACTCGTTCCAAAGGATCGACAATGTCCCAGAATCGC
TTGGCATACTTTTATCCGTGGTTTCAGGTGCATGTCGACTGATAACT
BS18159.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31278-PA | 717 | CG31278-RA | 1..717 | 733..17 | 3585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 14:20:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31278-RA | 872 | CG31278-RA | 79..795 | 733..17 | 3585 | 100 | Minus |
CG31278-RB | 883 | CG31278-RB | 79..806 | 733..17 | 3465 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 14:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10707858..10708262 | 329..733 | 2025 | 100 | Plus |
3R | 32079331 | 3R | 10707475..10707786 | 17..328 | 1560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 14:20:20 has no hits.
BS18159.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:16:30 Download gff for
BS18159.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-PA | 1..717 | 17..733 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:35 Download gff for
BS18159.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-RA | 72..795 | 17..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:18:54 Download gff for
BS18159.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-RA | 72..795 | 17..742 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:18:54 Download gff for
BS18159.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10707475..10707786 | 17..328 | 100 | <- | Plus |
3R | 10707858..10708269 | 329..742 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:35 Download gff for
BS18159.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6533197..6533508 | 17..328 | 100 | <- | Plus |
arm_3R | 6533580..6533991 | 329..742 | 99 | | Plus |
BS18159.5prime Sequence
747 bp (747 high quality bases) assembled on 2007-06-06
> BS18159.5prime
NAAGTTATCAGCCTACAGGGGCCTGAAACCACGGATAAAAGTATGCCAAG
CGATTCTGGGACATTGTCGATCCTTTGGAACGAGTCCTCCCGCTAATCAG
TCGTTCAGGAAGTGGTACCAGCACCTGTGGACCACGGAGCGCACAAACTT
GCCGCCATACAACCATTTCACCCAGATTGGTGACCCTGTTCTTAGGCAAC
AAGCGGCTTTGGTGCCCAAGGAGCACATGGCTAGCCCCGAGATTAAGGCC
ATCGTCGAGCGGATGGTCAAGGTGCTAAGGAAGTTCGACTGCGTCGGCAT
TGCGGCTCCTCAGATTGGAGTATCGCTCAGGATCATAGCAATGGAGTTCA
AGGGACGGATCCGAAAGGAGCTGCCCGAGGCCGTTTACCAAGCCCGACAA
ATGTCCGAGTTGCCACTGACTATTTTCATCAATCCCGTCCTGACGGTGAC
CAACTACGCGAAGCTGAAGCATCCAGAAGGATGCATGAGTGTGCGAGGTT
ACTCTGCCGAAGTGGAGCGTTTCGAAGGTGTAAAGCTAACAGGCCTTGAC
CAACTAGGAAACCAAAGCGAACTGGCTCTGAGTGGTTGGAATGCCCGGAT
AGCGCAGCACGAAATGGATCACCTGGAGGGAAAACTATACACCGATCACA
TGGACCGCTCAACCTTTGCGTGCACCTGCTGGGAGGCGGTTAACACGAAA
TCCGGACGCGTGGAGATACCCTTCTACAAGTAGAAGCTTTCTAGACC
BS18159.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31278-PA | 717 | CG31278-RA | 6..717 | 22..733 | 3560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 14:20:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31278-RA | 872 | CG31278-RA | 84..795 | 22..733 | 3560 | 100 | Plus |
CG31278-RB | 883 | CG31278-RB | 84..806 | 22..733 | 3440 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 14:20:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10707858..10708257 | 421..22 | 2000 | 100 | Minus |
3R | 32079331 | 3R | 10707475..10707786 | 733..422 | 1560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 14:20:47 has no hits.
BS18159.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:16:35 Download gff for
BS18159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-PA | 1..717 | 17..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:38 Download gff for
BS18159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-RA | 84..795 | 22..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:18:59 Download gff for
BS18159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-RA | 84..795 | 22..733 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:18:59 Download gff for
BS18159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10707475..10707786 | 422..733 | 100 | <- | Minus |
3R | 10707858..10708257 | 22..421 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:38 Download gff for
BS18159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6533197..6533508 | 422..733 | 100 | <- | Minus |
arm_3R | 6533580..6533979 | 22..421 | 100 | | Minus |
BS18159.pep Sequence
Translation from 16 to 732
> BS18159.pep
MHLKPRIKVCQAILGHCRSFGTSPPANQSFRKWYQHLWTTERTNLPPYNH
FTQIGDPVLRQQAALVPKEHMASPEIKAIVERMVKVLRKFDCVGIAAPQI
GVSLRIIAMEFKGRIRKELPEAVYQARQMSELPLTIFINPVLTVTNYAKL
KHPEGCMSVRGYSAEVERFEGVKLTGLDQLGNQSELALSGWNARIAQHEM
DHLEGKLYTDHMDRSTFACTCWEAVNTKSGRVEIPFYK*
BS18159.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31278-PA | 238 | CG31278-PA | 1..238 | 1..238 | 1264 | 100 | Plus |
CG31278-PB | 145 | CG31278-PB | 1..136 | 1..136 | 714 | 99.3 | Plus |
CG31373-PA | 196 | CG31373-PA | 4..196 | 46..238 | 602 | 58 | Plus |