Clone BS18160 Report

Search the DGRC for BS18160

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:181
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG13102-RA
Protein status:BS18160.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS18160.5prime Sequence

483 bp (483 high quality bases) assembled on 2007-06-06

> BS18160.5prime
GAAGTTATCACTCGACATGTATATGAAAGCTTTAATAGTCAGCATACTTG
TGGCCTTTGTGTGTGTGCAAATTGCTGATTCCCTGAAGTGTTACACCTGC
GTAACGCCAAAGGACTGCAAGAGTCCCAAGAAAGTCACCTGCACGAATGC
GGCTGCGAATGAGACTAGTTACTACCTGGGTGTCTATCATCAGAATGTTG
GCAACCTAACCAGCACGCGATTCGATTGCCTGGCTCTGAAGTACAACTGG
AATAACGATGTGATCCATCAGCTCCATGGCTGTGTGCATCCAAATGTTGG
AGCCTGCAGCTTAGCACTTAAGCCGGCCTATGCTCACTACAATAAGACCT
GGTGTCTCACCTGTTCGGGCGACAAGTGCAACAAGAATCCGGCCGGAAAG
ATGAGCAGCAGCACTATTGCCATCGCGTCTAGCGTTCTGGGTCTCTTGCT
GGTCAAGATGTATGCCTAGAAGCTTTCTAGACC

BS18160.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13102-PA 453 CG13102-RA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13102-RB 1835 CG13102-RB 77..529 17..469 2265 100 Plus
CG13102-RA 576 CG13102-RA 77..529 17..469 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9012626..9012843 252..469 1090 100 Plus
2L 23513712 2L 9012384..9012561 74..251 890 100 Plus
2L 23513712 2L 9012264..9012325 17..78 295 98.4 Plus
Blast to na_te.dros performed on 2015-02-13 06:49:23 has no hits.

BS18160.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:16:46 Download gff for BS18160.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13102-PA 1..453 17..469 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:04:13 Download gff for BS18160.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 67..529 5..469 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:39 Download gff for BS18160.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 67..529 5..469 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:39 Download gff for BS18160.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9012254..9012321 5..74 92 -> Plus
2L 9012385..9012561 75..251 100 -> Plus
2L 9012626..9012843 252..469 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:04:13 Download gff for BS18160.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9012254..9012321 5..74 92 -> Plus
arm_2L 9012385..9012561 75..251 100 -> Plus
arm_2L 9012626..9012843 252..469 100   Plus

BS18160.3prime Sequence

483 bp (483 high quality bases) assembled on 2007-06-06

> BS18160.3prime
ATGGTCTAGAAAGCTTCTACGCTTACATCTTGACCAGCAAGAGACCCAGA
ACGCTAGACGCGATGGCAATAGTGCTGCTGCTCATCTTTCCGGCCGGATT
CTTGTTGCACTTGTCGCCCGAACAGGTGAGACACCAGGTCTTATTGTAGT
GAGCATAGGCCGGCTTAAGTGCTAAGCTGCAGGCTCCAACATTTGGATGC
ACACAGCCATGGAGCTGATGGATCACATCGTTATTCCAGTTGTACTTCAG
AGCCAGGCAATCGAATCGCGTGCTGGTTAGGTTGCCAACATTCTGATGAT
AGACACCCAGGTAGTAACTAGTCTCATTCGCAGCCGCATTCGTGCAGGTG
ACTTTCTTGGGACTCTTGCAGTCCTTTGGCGTTACGCAGGTGTAACACTT
CAGGGAATCAGCAATTTGCACACACACAAAGGCCACAAGTATGCTGACTA
TTAAAGCTTTCATATACATGTCGACTGATAACT

BS18160.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13102-PA 453 CG13102-RA 1..446 469..24 2230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13102-RB 1835 CG13102-RB 77..529 469..17 2235 99.6 Minus
CG13102-RA 576 CG13102-RA 77..529 469..17 2235 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9012626..9012843 234..17 1060 99.1 Minus
2L 23513712 2L 9012384..9012561 412..235 890 100 Minus
2L 23513712 2L 9012264..9012325 469..408 295 98.4 Minus
Blast to na_te.dros performed on 2015-02-13 07:17:17 has no hits.

BS18160.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:16:40 Download gff for BS18160.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13102-PA 1..453 17..469 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:08:10 Download gff for BS18160.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 77..529 17..469 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:34 Download gff for BS18160.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 77..529 17..469 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:34 Download gff for BS18160.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9012264..9012321 412..469 100 -> Minus
2L 9012385..9012561 235..411 100 -> Minus
2L 9012626..9012843 17..234 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:08:10 Download gff for BS18160.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9012264..9012321 412..469 100 -> Minus
arm_2L 9012385..9012561 235..411 100 -> Minus
arm_2L 9012626..9012843 17..234 99   Minus

BS18160.complete Sequence

485 bp assembled on 2007-06-21

GenBank Submission: KX803192

> BS18160.complete
GAAGTTATCAGTCGACATGTATATGAAAGCTTTAATAGTCAGCATACTTG
TGGCCTTTGTGTGTGTGCAAATTGCTGATTCCCTGAAGTGTTACACCTGC
GTAACGCCAAAGGACTGCAAGAGTCCCAAGAAAGTCACCTGCACGAATGC
GGCTGCGAATGAGACTAGTTACTACCTGGGTGTCTATCATCAGAATGTTG
GCAACCTAACCAGCACGCGATTCGATTGCCTGGCTCTGAAGTACAACTGG
AATAACGATGTGATCCATCAGCTCCATGGCTGTGTGCATCCAAATGTTGG
AGCCTGCAGCTTAGCACTTAAGCCGGCCTATGCTCACTACAATAAGACCT
GGTGTCTCACCTGTTCGGGCGACAAGTGCAACAAGAATCCGGCCGGAAAG
ATGAGCAGCAGCACTATTGCCATCGCGTCTAGCGTTCTGGGTCTCTTGCT
GGTCAAGATGTATGCCTAGAAGCTTTCTAGACCAT

BS18160.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13102-RB 453 CG13102-PB 1..453 17..469 2265 100 Plus
CG13102-RA 453 CG13102-PA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13102-RB 1835 CG13102-RB 77..529 17..469 2265 100 Plus
CG13102-RA 576 CG13102-RA 77..529 17..469 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9012626..9012843 252..469 1090 100 Plus
2L 23513712 2L 9012384..9012561 74..251 890 100 Plus
2L 23513712 2L 9012264..9012325 17..78 295 98.4 Plus
Blast to na_te.dros performed on 2014-11-27 23:49:30 has no hits.

BS18160.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:41 Download gff for BS18160.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 1..453 17..469 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:31:24 Download gff for BS18160.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 72..524 17..469 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:04 Download gff for BS18160.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 77..529 17..469 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:41 Download gff for BS18160.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 72..524 17..469 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:08 Download gff for BS18160.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 77..529 17..469 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:08 Download gff for BS18160.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9012264..9012321 17..74 100 -> Plus
2L 9012385..9012561 75..251 100 -> Plus
2L 9012626..9012843 252..469 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:04 Download gff for BS18160.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9012264..9012321 17..74 100 -> Plus
arm_2L 9012385..9012561 75..251 100 -> Plus
arm_2L 9012626..9012843 252..469 100   Plus

BS18160.pep Sequence

Translation from 16 to 468

> BS18160.pep
MYMKALIVSILVAFVCVQIADSLKCYTCVTPKDCKSPKKVTCTNAAANET
SYYLGVYHQNVGNLTSTRFDCLALKYNWNNDVIHQLHGCVHPNVGACSLA
LKPAYAHYNKTWCLTCSGDKCNKNPAGKMSSSTIAIASSVLGLLLVKMYA
*

BS18160.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13102-PB 150 CG13102-PB 1..150 1..150 813 100 Plus
CG13102-PA 150 CG13102-PA 1..150 1..150 813 100 Plus
CG9568-PA 150 CG9568-PA 1..148 1..148 244 37.7 Plus