Clone Sequence Records
BS18160.5prime Sequence
483 bp (483 high quality bases) assembled on 2007-06-06
> BS18160.5prime
GAAGTTATCACTCGACATGTATATGAAAGCTTTAATAGTCAGCATACTTG
TGGCCTTTGTGTGTGTGCAAATTGCTGATTCCCTGAAGTGTTACACCTGC
GTAACGCCAAAGGACTGCAAGAGTCCCAAGAAAGTCACCTGCACGAATGC
GGCTGCGAATGAGACTAGTTACTACCTGGGTGTCTATCATCAGAATGTTG
GCAACCTAACCAGCACGCGATTCGATTGCCTGGCTCTGAAGTACAACTGG
AATAACGATGTGATCCATCAGCTCCATGGCTGTGTGCATCCAAATGTTGG
AGCCTGCAGCTTAGCACTTAAGCCGGCCTATGCTCACTACAATAAGACCT
GGTGTCTCACCTGTTCGGGCGACAAGTGCAACAAGAATCCGGCCGGAAAG
ATGAGCAGCAGCACTATTGCCATCGCGTCTAGCGTTCTGGGTCTCTTGCT
GGTCAAGATGTATGCCTAGAAGCTTTCTAGACC
BS18160.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:16:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13102-PA | 453 | CG13102-RA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13102-RB | 1835 | CG13102-RB | 77..529 | 17..469 | 2265 | 100 | Plus |
CG13102-RA | 576 | CG13102-RA | 77..529 | 17..469 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9012626..9012843 | 252..469 | 1090 | 100 | Plus |
2L | 23513712 | 2L | 9012384..9012561 | 74..251 | 890 | 100 | Plus |
2L | 23513712 | 2L | 9012264..9012325 | 17..78 | 295 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:49:23 has no hits.
BS18160.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:16:46 Download gff for
BS18160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-PA | 1..453 | 17..469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:04:13 Download gff for
BS18160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RA | 67..529 | 5..469 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:39 Download gff for
BS18160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RA | 67..529 | 5..469 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:39 Download gff for
BS18160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9012254..9012321 | 5..74 | 92 | -> | Plus |
2L | 9012385..9012561 | 75..251 | 100 | -> | Plus |
2L | 9012626..9012843 | 252..469 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:04:13 Download gff for
BS18160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9012254..9012321 | 5..74 | 92 | -> | Plus |
arm_2L | 9012385..9012561 | 75..251 | 100 | -> | Plus |
arm_2L | 9012626..9012843 | 252..469 | 100 | | Plus |
BS18160.3prime Sequence
483 bp (483 high quality bases) assembled on 2007-06-06
> BS18160.3prime
ATGGTCTAGAAAGCTTCTACGCTTACATCTTGACCAGCAAGAGACCCAGA
ACGCTAGACGCGATGGCAATAGTGCTGCTGCTCATCTTTCCGGCCGGATT
CTTGTTGCACTTGTCGCCCGAACAGGTGAGACACCAGGTCTTATTGTAGT
GAGCATAGGCCGGCTTAAGTGCTAAGCTGCAGGCTCCAACATTTGGATGC
ACACAGCCATGGAGCTGATGGATCACATCGTTATTCCAGTTGTACTTCAG
AGCCAGGCAATCGAATCGCGTGCTGGTTAGGTTGCCAACATTCTGATGAT
AGACACCCAGGTAGTAACTAGTCTCATTCGCAGCCGCATTCGTGCAGGTG
ACTTTCTTGGGACTCTTGCAGTCCTTTGGCGTTACGCAGGTGTAACACTT
CAGGGAATCAGCAATTTGCACACACACAAAGGCCACAAGTATGCTGACTA
TTAAAGCTTTCATATACATGTCGACTGATAACT
BS18160.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:16:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13102-PA | 453 | CG13102-RA | 1..446 | 469..24 | 2230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:17:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13102-RB | 1835 | CG13102-RB | 77..529 | 469..17 | 2235 | 99.6 | Minus |
CG13102-RA | 576 | CG13102-RA | 77..529 | 469..17 | 2235 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:17:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9012626..9012843 | 234..17 | 1060 | 99.1 | Minus |
2L | 23513712 | 2L | 9012384..9012561 | 412..235 | 890 | 100 | Minus |
2L | 23513712 | 2L | 9012264..9012325 | 469..408 | 295 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:17:17 has no hits.
BS18160.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:16:40 Download gff for
BS18160.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-PA | 1..453 | 17..469 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:08:10 Download gff for
BS18160.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RA | 77..529 | 17..469 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:34 Download gff for
BS18160.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RA | 77..529 | 17..469 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:34 Download gff for
BS18160.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9012264..9012321 | 412..469 | 100 | -> | Minus |
2L | 9012385..9012561 | 235..411 | 100 | -> | Minus |
2L | 9012626..9012843 | 17..234 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:08:10 Download gff for
BS18160.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9012264..9012321 | 412..469 | 100 | -> | Minus |
arm_2L | 9012385..9012561 | 235..411 | 100 | -> | Minus |
arm_2L | 9012626..9012843 | 17..234 | 99 | | Minus |
BS18160.complete Sequence
485 bp assembled on 2007-06-21
GenBank Submission: KX803192
> BS18160.complete
GAAGTTATCAGTCGACATGTATATGAAAGCTTTAATAGTCAGCATACTTG
TGGCCTTTGTGTGTGTGCAAATTGCTGATTCCCTGAAGTGTTACACCTGC
GTAACGCCAAAGGACTGCAAGAGTCCCAAGAAAGTCACCTGCACGAATGC
GGCTGCGAATGAGACTAGTTACTACCTGGGTGTCTATCATCAGAATGTTG
GCAACCTAACCAGCACGCGATTCGATTGCCTGGCTCTGAAGTACAACTGG
AATAACGATGTGATCCATCAGCTCCATGGCTGTGTGCATCCAAATGTTGG
AGCCTGCAGCTTAGCACTTAAGCCGGCCTATGCTCACTACAATAAGACCT
GGTGTCTCACCTGTTCGGGCGACAAGTGCAACAAGAATCCGGCCGGAAAG
ATGAGCAGCAGCACTATTGCCATCGCGTCTAGCGTTCTGGGTCTCTTGCT
GGTCAAGATGTATGCCTAGAAGCTTTCTAGACCAT
BS18160.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:49:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13102-RB | 453 | CG13102-PB | 1..453 | 17..469 | 2265 | 100 | Plus |
CG13102-RA | 453 | CG13102-PA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:49:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13102-RB | 1835 | CG13102-RB | 77..529 | 17..469 | 2265 | 100 | Plus |
CG13102-RA | 576 | CG13102-RA | 77..529 | 17..469 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:49:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9012626..9012843 | 252..469 | 1090 | 100 | Plus |
2L | 23513712 | 2L | 9012384..9012561 | 74..251 | 890 | 100 | Plus |
2L | 23513712 | 2L | 9012264..9012325 | 17..78 | 295 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:49:30 has no hits.
BS18160.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:41 Download gff for
BS18160.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RA | 1..453 | 17..469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:31:24 Download gff for
BS18160.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RA | 72..524 | 17..469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:04 Download gff for
BS18160.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RA | 77..529 | 17..469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:41 Download gff for
BS18160.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RA | 72..524 | 17..469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:08 Download gff for
BS18160.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RA | 77..529 | 17..469 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:08 Download gff for
BS18160.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9012264..9012321 | 17..74 | 100 | -> | Plus |
2L | 9012385..9012561 | 75..251 | 100 | -> | Plus |
2L | 9012626..9012843 | 252..469 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:04 Download gff for
BS18160.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9012264..9012321 | 17..74 | 100 | -> | Plus |
arm_2L | 9012385..9012561 | 75..251 | 100 | -> | Plus |
arm_2L | 9012626..9012843 | 252..469 | 100 | | Plus |
BS18160.pep Sequence
Translation from 16 to 468
> BS18160.pep
MYMKALIVSILVAFVCVQIADSLKCYTCVTPKDCKSPKKVTCTNAAANET
SYYLGVYHQNVGNLTSTRFDCLALKYNWNNDVIHQLHGCVHPNVGACSLA
LKPAYAHYNKTWCLTCSGDKCNKNPAGKMSSSTIAIASSVLGLLLVKMYA
*
BS18160.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13102-PB | 150 | CG13102-PB | 1..150 | 1..150 | 813 | 100 | Plus |
CG13102-PA | 150 | CG13102-PA | 1..150 | 1..150 | 813 | 100 | Plus |
CG9568-PA | 150 | CG9568-PA | 1..148 | 1..148 | 244 | 37.7 | Plus |