Clone Sequence Records
BS18162.5prime Sequence
309 bp (309 high quality bases) assembled on 2007-06-06
> BS18162.5prime
GAAGTTATCACTCGACATGTCGACCCGTCGCCAGGCGATCACGTTATACA
GGAATCTCCTGCGCGAATCGGAGAAGCTGCCCTCGTACAACTTCAGAATG
TACGCTGCCCGAAAAATACGCGACACATTCCGCGCCAACAGGAGCACCAG
GGACTTCGCGGAGATCGATCGCCAAATGGCCGAGGGCCAACAGAATCTGG
AGCTGATACGTCGCCAGGTAATCATCGGCCACCTGTATTCCGCTGACAAA
CTGGTTATAGAGAACAAGAAGACCCTGAAGCCCTCGGACGACTAAAAGCT
TTCTAGACC
BS18162.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3717-PA | 279 | bcn92-RA | 1..279 | 17..295 | 1395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bcn92-RA | 748 | CG3717-RA | 167..445 | 17..295 | 1395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2149219..2149346 | 219..92 | 640 | 100 | Minus |
X | 23542271 | X | 2148766..2148846 | 295..215 | 405 | 100 | Minus |
X | 23542271 | X | 2149402..2149481 | 96..17 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:31:58 has no hits.
BS18162.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:17:05 Download gff for
BS18162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3717-PA | 1..279 | 17..295 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:59 Download gff for
BS18162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bcn92-RA | 161..445 | 10..295 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:39 Download gff for
BS18162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bcn92-RA | 161..445 | 10..295 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:39 Download gff for
BS18162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2148766..2148843 | 218..295 | 100 | <- | Minus |
X | 2149221..2149341 | 97..217 | 100 | <- | Minus |
X | 2149402..2149487 | 10..96 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:59 Download gff for
BS18162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2042799..2042876 | 218..295 | 100 | <- | Minus |
arm_X | 2043254..2043374 | 97..217 | 100 | <- | Minus |
arm_X | 2043435..2043520 | 10..96 | 95 | | Minus |
BS18162.3prime Sequence
309 bp (309 high quality bases) assembled on 2007-06-06
> BS18162.3prime
ATGGTCTAGAAAGCTTTTAGCCTTCCGAGGGCTTCAGGGTCTTCTTGTTC
TCTATAACCAGTTTGTCAGCGGAATACAGGTGGCCGATGATTACCTGGCG
ACGTATCAGCTCCAGATTCTGTTGGCCCTCGGCCATTTGGCGATCGATCT
CCGCGAAGTCCCTGGTGCTCCTGTTGGCGCGGAATGTGTCGCGTATTTTT
CGGGCAGCGTACATTCTGAAGTTGTACGAGGGCAGCTTCTCCGATTCGCG
CAGGAGATTCCTGTATAACGTGATCGCCTGGCGACGGGTCGACATGTCGA
CTGATAACT
BS18162.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3717-PA | 279 | bcn92-RA | 1..272 | 295..24 | 1360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:40:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bcn92-RA | 748 | CG3717-RA | 167..445 | 295..17 | 1365 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2149219..2149346 | 93..220 | 640 | 100 | Plus |
X | 23542271 | X | 2149402..2149481 | 216..295 | 400 | 100 | Plus |
X | 23542271 | X | 2148766..2148846 | 17..97 | 375 | 97.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:40:26 has no hits.
BS18162.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:17:00 Download gff for
BS18162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3717-PA | 1..279 | 17..295 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:21:17 Download gff for
BS18162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bcn92-RA | 163..445 | 17..303 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:37:31 Download gff for
BS18162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bcn92-RA | 163..445 | 17..303 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:37:31 Download gff for
BS18162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2149221..2149341 | 95..215 | 100 | <- | Plus |
X | 2149402..2149485 | 216..303 | 95 | | Plus |
X | 2148766..2148843 | 17..94 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:21:17 Download gff for
BS18162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2043435..2043518 | 216..303 | 95 | | Plus |
arm_X | 2042799..2042876 | 17..94 | 97 | <- | Plus |
arm_X | 2043254..2043374 | 95..215 | 100 | <- | Plus |
BS18162.complete Sequence
311 bp assembled on 2007-06-21
GenBank Submission: KX804624
> BS18162.complete
GAAGTTATCAGTCGACATGTCGACCCGTCGCCAGGCGATCACGTTATACA
GGAATCTCCTGCGCGAATCGGAGAAGCTGCCCTCGTACAACTTCAGAATG
TACGCTGCCCGAAAAATACGCGACACATTCCGCGCCAACAGGAGCACCAG
GGACTTCGCGGAGATCGATCGCCAAATGGCCGAGGGCCAACAGAATCTGG
AGCTGATACGTCGCCAGGTAATCATCGGCCACCTGTATTCCGCTGACAAA
CTGGTTATAGAGAACAAGAAGACCCTGAAGCCCTCGGACGACTAAAAGCT
TTCTAGACCAT
BS18162.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bcn92-RA | 279 | CG3717-PA | 1..279 | 17..295 | 1395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bcn92-RA | 748 | CG3717-RA | 167..445 | 17..295 | 1395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2149219..2149346 | 219..92 | 640 | 100 | Minus |
X | 23542271 | X | 2148766..2148846 | 295..215 | 405 | 100 | Minus |
X | 23542271 | X | 2149402..2149481 | 96..17 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:11:40 has no hits.
BS18162.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:34 Download gff for
BS18162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bcn92-RA | 1..279 | 17..295 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:12:26 Download gff for
BS18162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bcn92-RA | 116..398 | 9..295 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:33 Download gff for
BS18162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bcn92-RA | 167..443 | 17..293 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:34 Download gff for
BS18162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bcn92-RA | 116..398 | 9..295 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:57 Download gff for
BS18162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bcn92-RA | 167..443 | 17..293 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:57 Download gff for
BS18162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2148768..2148843 | 218..293 | 100 | <- | Minus |
X | 2149221..2149341 | 97..217 | 100 | <- | Minus |
X | 2149402..2149481 | 17..96 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:33 Download gff for
BS18162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2042801..2042876 | 218..293 | 100 | <- | Minus |
arm_X | 2043254..2043374 | 97..217 | 100 | <- | Minus |
arm_X | 2043435..2043514 | 17..96 | 100 | | Minus |
BS18162.pep Sequence
Translation from 16 to 294
> BS18162.pep
MSTRRQAITLYRNLLRESEKLPSYNFRMYAARKIRDTFRANRSTRDFAEI
DRQMAEGQQNLELIRRQVIIGHLYSADKLVIENKKTLKPSDD*
BS18162.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bcn92-PA | 92 | CG3717-PA | 1..92 | 1..92 | 460 | 100 | Plus |