Clone BS18162 Report

Search the DGRC for BS18162

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:181
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptbcn92-RA
Protein status:BS18162.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS18162.5prime Sequence

309 bp (309 high quality bases) assembled on 2007-06-06

> BS18162.5prime
GAAGTTATCACTCGACATGTCGACCCGTCGCCAGGCGATCACGTTATACA
GGAATCTCCTGCGCGAATCGGAGAAGCTGCCCTCGTACAACTTCAGAATG
TACGCTGCCCGAAAAATACGCGACACATTCCGCGCCAACAGGAGCACCAG
GGACTTCGCGGAGATCGATCGCCAAATGGCCGAGGGCCAACAGAATCTGG
AGCTGATACGTCGCCAGGTAATCATCGGCCACCTGTATTCCGCTGACAAA
CTGGTTATAGAGAACAAGAAGACCCTGAAGCCCTCGGACGACTAAAAGCT
TTCTAGACC

BS18162.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3717-PA 279 bcn92-RA 1..279 17..295 1395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
bcn92-RA 748 CG3717-RA 167..445 17..295 1395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2149219..2149346 219..92 640 100 Minus
X 23542271 X 2148766..2148846 295..215 405 100 Minus
X 23542271 X 2149402..2149481 96..17 400 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:31:58 has no hits.

BS18162.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:17:05 Download gff for BS18162.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3717-PA 1..279 17..295 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:59 Download gff for BS18162.5prime
Subject Subject Range Query Range Percent Splice Strand
bcn92-RA 161..445 10..295 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:39 Download gff for BS18162.5prime
Subject Subject Range Query Range Percent Splice Strand
bcn92-RA 161..445 10..295 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:39 Download gff for BS18162.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2148766..2148843 218..295 100 <- Minus
X 2149221..2149341 97..217 100 <- Minus
X 2149402..2149487 10..96 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:59 Download gff for BS18162.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2042799..2042876 218..295 100 <- Minus
arm_X 2043254..2043374 97..217 100 <- Minus
arm_X 2043435..2043520 10..96 95   Minus

BS18162.3prime Sequence

309 bp (309 high quality bases) assembled on 2007-06-06

> BS18162.3prime
ATGGTCTAGAAAGCTTTTAGCCTTCCGAGGGCTTCAGGGTCTTCTTGTTC
TCTATAACCAGTTTGTCAGCGGAATACAGGTGGCCGATGATTACCTGGCG
ACGTATCAGCTCCAGATTCTGTTGGCCCTCGGCCATTTGGCGATCGATCT
CCGCGAAGTCCCTGGTGCTCCTGTTGGCGCGGAATGTGTCGCGTATTTTT
CGGGCAGCGTACATTCTGAAGTTGTACGAGGGCAGCTTCTCCGATTCGCG
CAGGAGATTCCTGTATAACGTGATCGCCTGGCGACGGGTCGACATGTCGA
CTGATAACT

BS18162.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3717-PA 279 bcn92-RA 1..272 295..24 1360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
bcn92-RA 748 CG3717-RA 167..445 295..17 1365 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2149219..2149346 93..220 640 100 Plus
X 23542271 X 2149402..2149481 216..295 400 100 Plus
X 23542271 X 2148766..2148846 17..97 375 97.5 Plus
Blast to na_te.dros performed on 2015-02-12 16:40:26 has no hits.

BS18162.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:17:00 Download gff for BS18162.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3717-PA 1..279 17..295 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:21:17 Download gff for BS18162.3prime
Subject Subject Range Query Range Percent Splice Strand
bcn92-RA 163..445 17..303 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:37:31 Download gff for BS18162.3prime
Subject Subject Range Query Range Percent Splice Strand
bcn92-RA 163..445 17..303 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:37:31 Download gff for BS18162.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2149221..2149341 95..215 100 <- Plus
X 2149402..2149485 216..303 95   Plus
X 2148766..2148843 17..94 97 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:21:17 Download gff for BS18162.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2043435..2043518 216..303 95   Plus
arm_X 2042799..2042876 17..94 97 <- Plus
arm_X 2043254..2043374 95..215 100 <- Plus

BS18162.complete Sequence

311 bp assembled on 2007-06-21

GenBank Submission: KX804624

> BS18162.complete
GAAGTTATCAGTCGACATGTCGACCCGTCGCCAGGCGATCACGTTATACA
GGAATCTCCTGCGCGAATCGGAGAAGCTGCCCTCGTACAACTTCAGAATG
TACGCTGCCCGAAAAATACGCGACACATTCCGCGCCAACAGGAGCACCAG
GGACTTCGCGGAGATCGATCGCCAAATGGCCGAGGGCCAACAGAATCTGG
AGCTGATACGTCGCCAGGTAATCATCGGCCACCTGTATTCCGCTGACAAA
CTGGTTATAGAGAACAAGAAGACCCTGAAGCCCTCGGACGACTAAAAGCT
TTCTAGACCAT

BS18162.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
bcn92-RA 279 CG3717-PA 1..279 17..295 1395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
bcn92-RA 748 CG3717-RA 167..445 17..295 1395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2149219..2149346 219..92 640 100 Minus
X 23542271 X 2148766..2148846 295..215 405 100 Minus
X 23542271 X 2149402..2149481 96..17 400 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:11:40 has no hits.

BS18162.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:34 Download gff for BS18162.complete
Subject Subject Range Query Range Percent Splice Strand
bcn92-RA 1..279 17..295 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:12:26 Download gff for BS18162.complete
Subject Subject Range Query Range Percent Splice Strand
bcn92-RA 116..398 9..295 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:33 Download gff for BS18162.complete
Subject Subject Range Query Range Percent Splice Strand
bcn92-RA 167..443 17..293 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:34 Download gff for BS18162.complete
Subject Subject Range Query Range Percent Splice Strand
bcn92-RA 116..398 9..295 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:57 Download gff for BS18162.complete
Subject Subject Range Query Range Percent Splice Strand
bcn92-RA 167..443 17..293 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:57 Download gff for BS18162.complete
Subject Subject Range Query Range Percent Splice Strand
X 2148768..2148843 218..293 100 <- Minus
X 2149221..2149341 97..217 100 <- Minus
X 2149402..2149481 17..96 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:33 Download gff for BS18162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2042801..2042876 218..293 100 <- Minus
arm_X 2043254..2043374 97..217 100 <- Minus
arm_X 2043435..2043514 17..96 100   Minus

BS18162.pep Sequence

Translation from 16 to 294

> BS18162.pep
MSTRRQAITLYRNLLRESEKLPSYNFRMYAARKIRDTFRANRSTRDFAEI
DRQMAEGQQNLELIRRQVIIGHLYSADKLVIENKKTLKPSDD*

BS18162.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
bcn92-PA 92 CG3717-PA 1..92 1..92 460 100 Plus