Clone BS18163 Report

Search the DGRC for BS18163

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:181
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG3814-RA
Protein status:BS18163.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS18163.3prime Sequence

750 bp (750 high quality bases) assembled on 2007-06-06

> BS18163.3prime
ATGGTCTAGAAAGCTTCTAATTGCGAGACAATCCGATAATGGTCAGTATG
TACATGAAGATGTTAATAATGTCCAGGTAGAGGTTTAGAGCGGCGAAGAT
GTATTCCTCAGGACTGATGGAGTACTTATGATTACCACCCAGCATCAACT
GGGTATCGTACACCAAGTAAACGGAGAAGAGCAATGCTCCCAAGGAGGCA
TAGACCAGTCCGATCACCTTGCCCGGTATGAAGATAGCGATTATACCAAA
AATGATGAAGACCACCAGACAGGCCACCAACACTCCTCCGCACATCGTAA
AATCGTATTTGGTCTGCAGGGCAAACAGGGTGAGTCCCAGGGCCACCGCG
GCCGTAATTCCCACTGCCATCAGGACCTCATCAGCCTCAAACTGTCCGGC
GACCATACCCAGAAGGAACGACTCCGCCACGGTGAACAGGAAAAGAAAGA
TGAAGTTAAGAGGCGTCTTACGGCGTACACTTTCGCAGCAGGCCATACAG
ATCATGGTCACGATAAGAACGGCCAAGGCTATCCAAAACAGTGCCGGATT
TTTTTGCACCCATTCCTGCGAAGCTTTCGAGAACGTAAATACGCTAACAA
AACCGAAAGTGATCAGCAATTGGCACATCAATATCAAGTAGACCTTTCGA
ATAAATCCCTTCCGGATGCTCTGGTCATCGAAGGCGAAGCTCTTGTCCGC
TTCCGCATCGTACTGAAAATGATTGTCGCTGCTCATGTCGACTGATAACT

BS18163.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3814-PA 720 CG3814-RA 1..720 736..17 3600 100 Minus
CG3814-PB 735 CG3814-RB 43..735 709..17 3465 100 Minus
CG3798-PB 942 Nmda1-RB 835..917 124..42 165 87.9 Minus
CG3798-PA 942 Nmda1-RA 835..917 124..42 165 87.9 Minus
CG3798-PF 951 Nmda1-RF 844..926 124..42 165 87.9 Minus
CG3798-PD 975 Nmda1-RD 868..950 124..42 165 87.9 Minus
CG3798-PC 975 Nmda1-RC 868..950 124..42 165 87.9 Minus
CG3798-PE 975 Nmda1-RE 868..950 124..42 165 87.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3814-RD 933 CG3814-RD 104..825 737..16 3610 100 Minus
CG3814-RA 1073 CG3814-RA 244..965 737..16 3610 100 Minus
CG3814-RC 1011 CG3814-RC 210..903 709..16 3470 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12875272..12875780 16..524 2545 100 Plus
2R 25286936 2R 12875841..12875944 523..626 520 100 Plus
2R 25286936 2R 12876101..12876184 626..709 420 100 Plus
2R 25286936 2R 12877671..12878016 33..378 410 74.6 Plus
3R 32079331 3R 14152993..14153147 48..202 295 79.4 Plus
Blast to na_te.dros performed on 2015-02-12 16:40:39 has no hits.

BS18163.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:17:10 Download gff for BS18163.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3814-PA 1..720 17..736 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:21:19 Download gff for BS18163.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 244..967 12..737 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:01 Download gff for BS18163.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 244..967 12..737 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:01 Download gff for BS18163.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12875270..12875779 12..523 99 <- Plus
2R 12875842..12875943 524..625 100 <- Plus
2R 12876101..12876183 626..708 100 <- Plus
2R 12876262..12876290 709..737 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:21:19 Download gff for BS18163.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8762775..8763284 12..523 99 <- Plus
arm_2R 8763347..8763448 524..625 100 <- Plus
arm_2R 8763606..8763688 626..708 100 <- Plus
arm_2R 8763767..8763795 709..737 100   Plus

BS18163.5prime Sequence

750 bp (750 high quality bases) assembled on 2007-06-06

> BS18163.5prime
GAAGTTATCAGTCGACATGAGCAGCGACAATCATTTTCAGTACGATGCGG
AAGCGGACAAGAGCTTCGCCTTCGATGACCAGAGCATCCGGAAGGGATTT
ATTCGAAAGGTCTACTTGATATTGATGTGCCAATTGCTGATCACTTTCGG
TTTTGTTAGCGTATTTACGTTCTCGAAAGCTTCGCAGGAATGGGTGCAAA
AAAATCCGGCACTGTTTTGGATAGCCTTGGCCGTTCTTATCGTGACCATG
ATCTGTATGGCCTGCTGCGAAAGTGTACGCCGTAAGACGCCTCTTAACTT
CATCTTTCTTTTCCTGTTCACCGTGGCGGAGTCGTTCCTTCTGGGTATGG
TCGCCGGACAGTTTGAGGCTGATGAGGTCCTGATGGCAGTGGGAATTACG
GCCGCGGTGGCCCTGGGACTCACCCTGTTTGCCCTGCAGACCAAATACGA
TTTTACGATGTGCGGAGGAGTGTTGGTGGCCTGTCTGGTGGTCTTCATCA
TTTTTGGTATAATCGCTATCTTCATACCGGGCAAGGTGATCGGACTGGTC
TATGCCTCCTTGGGAGCATTGCTCTTCTCCGTTTACTTGGTGTACGATAC
CCAGTTGATGCTGGGTGGTAATCATAAGTACTCCATCAGTCCTGAGGAAT
ACATCTTCGCCGCTCTAAACCTCTACCTGGACATTATTAACATCTTCATG
TACATACTGACCATTATCGGATTGTCTCGCAATTAGAAGCTTTCTAGACC

BS18163.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3814-PA 720 CG3814-RA 1..720 17..736 3600 100 Plus
CG3814-PB 735 CG3814-RB 43..735 44..736 3465 100 Plus
CG3798-PB 942 Nmda1-RB 835..917 629..711 165 87.9 Plus
CG3798-PA 942 Nmda1-RA 835..917 629..711 165 87.9 Plus
CG3798-PF 951 Nmda1-RF 844..926 629..711 165 87.9 Plus
CG3798-PD 975 Nmda1-RD 868..950 629..711 165 87.9 Plus
CG3798-PC 975 Nmda1-RC 868..950 629..711 165 87.9 Plus
CG3798-PE 975 Nmda1-RE 868..950 629..711 165 87.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3814-RD 933 CG3814-RD 104..825 16..737 3610 100 Plus
CG3814-RA 1073 CG3814-RA 244..965 16..737 3610 100 Plus
CG3814-RC 1011 CG3814-RC 210..903 44..737 3470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12875272..12875780 737..229 2545 100 Minus
2R 25286936 2R 12875841..12875944 230..127 520 100 Minus
2R 25286936 2R 12876101..12876184 127..44 420 100 Minus
2R 25286936 2R 12877671..12878016 720..375 410 74.6 Minus
3R 32079331 3R 14152993..14153147 705..551 295 79.4 Minus
Blast to na_te.dros performed on 2015-02-11 05:19:07 has no hits.

BS18163.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:17:15 Download gff for BS18163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3814-PA 1..720 17..736 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:49:32 Download gff for BS18163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 244..967 16..741 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:08 Download gff for BS18163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 244..967 16..741 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:08 Download gff for BS18163.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12875270..12875779 230..741 99 <- Minus
2R 12875842..12875943 128..229 100 <- Minus
2R 12876101..12876183 45..127 100 <- Minus
2R 12876262..12876290 16..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:49:32 Download gff for BS18163.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8762775..8763284 230..741 99 <- Minus
arm_2R 8763347..8763448 128..229 100 <- Minus
arm_2R 8763606..8763688 45..127 100 <- Minus
arm_2R 8763767..8763795 16..44 100   Minus

BS18163.complete Sequence

752 bp assembled on 2007-06-21

GenBank Submission: KX804357

> BS18163.complete
GAAGTTATCAGTCGACATGAGCAGCGACAATCATTTTCAGTACGATGCGG
AAGCGGACAAGAGCTTCGCCTTCGATGACCAGAGCATCCGGAAGGGATTT
ATTCGAAAGGTCTACTTGATATTGATGTGCCAATTGCTGATCACTTTCGG
TTTTGTTAGCGTATTTACGTTCTCGAAAGCTTCGCAGGAATGGGTGCAAA
AAAATCCGGCACTGTTTTGGATAGCCTTGGCCGTTCTTATCGTGACCATG
ATCTGTATGGCCTGCTGCGAAAGTGTACGCCGTAAGACGCCTCTTAACTT
CATCTTTCTTTTCCTGTTCACCGTGGCGGAGTCGTTCCTTCTGGGTATGG
TCGCCGGACAGTTTGAGGCTGATGAGGTCCTGATGGCAGTGGGAATTACG
GCCGCGGTGGCCCTGGGACTCACCCTGTTTGCCCTGCAGACCAAATACGA
TTTTACGATGTGCGGAGGAGTGTTGGTGGCCTGTCTGGTGGTCTTCATCA
TTTTTGGTATAATCGCTATCTTCATACCGGGCAAGGTGATCGGACTGGTC
TATGCCTCCTTGGGAGCATTGCTCTTCTCCGTTTACTTGGTGTACGATAC
CCAGTTGATGCTGGGTGGTAATCATAAGTACTCCATCAGTCCTGAGGAAT
ACATCTTCGCCGCTCTAAACCTCTACCTGGACATTATTAACATCTTCATG
TACATACTGACCATTATCGGATTGTCTCGCAATTAGAAGCTTTCTAGACC
AT

BS18163.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3814-RD 720 CG3814-PD 1..720 17..736 3600 100 Plus
CG3814-RA 720 CG3814-PA 1..720 17..736 3600 100 Plus
CG3814-RB 735 CG3814-PB 43..735 44..736 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3814-RD 933 CG3814-RD 104..825 16..737 3610 100 Plus
CG3814-RA 1073 CG3814-RA 244..965 16..737 3610 100 Plus
CG3814-RC 1011 CG3814-RC 210..903 44..737 3470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12875272..12875780 737..229 2545 100 Minus
2R 25286936 2R 12875841..12875944 230..127 520 100 Minus
2R 25286936 2R 12876101..12876184 127..44 420 100 Minus
2R 25286936 2R 12877671..12878016 720..375 410 74.6 Minus
3R 32079331 3R 14152993..14153147 705..551 295 79.4 Minus
Blast to na_te.dros performed on 2014-11-27 13:40:49 has no hits.

BS18163.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:07 Download gff for BS18163.complete
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 1..720 17..736 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:55 Download gff for BS18163.complete
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 378..1101 16..741 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:57 Download gff for BS18163.complete
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 245..964 17..736 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:28 Download gff for BS18163.complete
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 245..964 17..736 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:28 Download gff for BS18163.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12875273..12875779 230..736 100 <- Minus
2R 12875842..12875943 128..229 100 <- Minus
2R 12876101..12876183 45..127 100 <- Minus
2R 12876262..12876289 17..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:57 Download gff for BS18163.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8762778..8763284 230..736 100 <- Minus
arm_2R 8763347..8763448 128..229 100 <- Minus
arm_2R 8763606..8763688 45..127 100 <- Minus
arm_2R 8763767..8763794 17..44 100   Minus

BS18163.pep Sequence

Translation from 16 to 735

> BS18163.pep
MSSDNHFQYDAEADKSFAFDDQSIRKGFIRKVYLILMCQLLITFGFVSVF
TFSKASQEWVQKNPALFWIALAVLIVTMICMACCESVRRKTPLNFIFLFL
FTVAESFLLGMVAGQFEADEVLMAVGITAAVALGLTLFALQTKYDFTMCG
GVLVACLVVFIIFGIIAIFIPGKVIGLVYASLGALLFSVYLVYDTQLMLG
GNHKYSISPEEYIFAALNLYLDIINIFMYILTIIGLSRN*

BS18163.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3814-PD 239 CG3814-PD 1..239 1..239 1208 100 Plus
CG3814-PA 239 CG3814-PA 1..239 1..239 1208 100 Plus
CG3814-PB 244 CG3814-PB 15..244 10..239 1157 100 Plus
CG3814-PC 203 CG3814-PC 1..203 37..239 1023 100 Plus
Nmda1-PH 313 CG3798-PH 89..313 15..239 862 72.4 Plus