Clone Sequence Records
BS18163.3prime Sequence
750 bp (750 high quality bases) assembled on 2007-06-06
> BS18163.3prime
ATGGTCTAGAAAGCTTCTAATTGCGAGACAATCCGATAATGGTCAGTATG
TACATGAAGATGTTAATAATGTCCAGGTAGAGGTTTAGAGCGGCGAAGAT
GTATTCCTCAGGACTGATGGAGTACTTATGATTACCACCCAGCATCAACT
GGGTATCGTACACCAAGTAAACGGAGAAGAGCAATGCTCCCAAGGAGGCA
TAGACCAGTCCGATCACCTTGCCCGGTATGAAGATAGCGATTATACCAAA
AATGATGAAGACCACCAGACAGGCCACCAACACTCCTCCGCACATCGTAA
AATCGTATTTGGTCTGCAGGGCAAACAGGGTGAGTCCCAGGGCCACCGCG
GCCGTAATTCCCACTGCCATCAGGACCTCATCAGCCTCAAACTGTCCGGC
GACCATACCCAGAAGGAACGACTCCGCCACGGTGAACAGGAAAAGAAAGA
TGAAGTTAAGAGGCGTCTTACGGCGTACACTTTCGCAGCAGGCCATACAG
ATCATGGTCACGATAAGAACGGCCAAGGCTATCCAAAACAGTGCCGGATT
TTTTTGCACCCATTCCTGCGAAGCTTTCGAGAACGTAAATACGCTAACAA
AACCGAAAGTGATCAGCAATTGGCACATCAATATCAAGTAGACCTTTCGA
ATAAATCCCTTCCGGATGCTCTGGTCATCGAAGGCGAAGCTCTTGTCCGC
TTCCGCATCGTACTGAAAATGATTGTCGCTGCTCATGTCGACTGATAACT
BS18163.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3814-PA | 720 | CG3814-RA | 1..720 | 736..17 | 3600 | 100 | Minus |
CG3814-PB | 735 | CG3814-RB | 43..735 | 709..17 | 3465 | 100 | Minus |
CG3798-PB | 942 | Nmda1-RB | 835..917 | 124..42 | 165 | 87.9 | Minus |
CG3798-PA | 942 | Nmda1-RA | 835..917 | 124..42 | 165 | 87.9 | Minus |
CG3798-PF | 951 | Nmda1-RF | 844..926 | 124..42 | 165 | 87.9 | Minus |
CG3798-PD | 975 | Nmda1-RD | 868..950 | 124..42 | 165 | 87.9 | Minus |
CG3798-PC | 975 | Nmda1-RC | 868..950 | 124..42 | 165 | 87.9 | Minus |
CG3798-PE | 975 | Nmda1-RE | 868..950 | 124..42 | 165 | 87.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3814-RD | 933 | CG3814-RD | 104..825 | 737..16 | 3610 | 100 | Minus |
CG3814-RA | 1073 | CG3814-RA | 244..965 | 737..16 | 3610 | 100 | Minus |
CG3814-RC | 1011 | CG3814-RC | 210..903 | 709..16 | 3470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:40:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12875272..12875780 | 16..524 | 2545 | 100 | Plus |
2R | 25286936 | 2R | 12875841..12875944 | 523..626 | 520 | 100 | Plus |
2R | 25286936 | 2R | 12876101..12876184 | 626..709 | 420 | 100 | Plus |
2R | 25286936 | 2R | 12877671..12878016 | 33..378 | 410 | 74.6 | Plus |
3R | 32079331 | 3R | 14152993..14153147 | 48..202 | 295 | 79.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:40:39 has no hits.
BS18163.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:17:10 Download gff for
BS18163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-PA | 1..720 | 17..736 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:21:19 Download gff for
BS18163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-RA | 244..967 | 12..737 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:01 Download gff for
BS18163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-RA | 244..967 | 12..737 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:01 Download gff for
BS18163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12875270..12875779 | 12..523 | 99 | <- | Plus |
2R | 12875842..12875943 | 524..625 | 100 | <- | Plus |
2R | 12876101..12876183 | 626..708 | 100 | <- | Plus |
2R | 12876262..12876290 | 709..737 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:21:19 Download gff for
BS18163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8762775..8763284 | 12..523 | 99 | <- | Plus |
arm_2R | 8763347..8763448 | 524..625 | 100 | <- | Plus |
arm_2R | 8763606..8763688 | 626..708 | 100 | <- | Plus |
arm_2R | 8763767..8763795 | 709..737 | 100 | | Plus |
BS18163.5prime Sequence
750 bp (750 high quality bases) assembled on 2007-06-06
> BS18163.5prime
GAAGTTATCAGTCGACATGAGCAGCGACAATCATTTTCAGTACGATGCGG
AAGCGGACAAGAGCTTCGCCTTCGATGACCAGAGCATCCGGAAGGGATTT
ATTCGAAAGGTCTACTTGATATTGATGTGCCAATTGCTGATCACTTTCGG
TTTTGTTAGCGTATTTACGTTCTCGAAAGCTTCGCAGGAATGGGTGCAAA
AAAATCCGGCACTGTTTTGGATAGCCTTGGCCGTTCTTATCGTGACCATG
ATCTGTATGGCCTGCTGCGAAAGTGTACGCCGTAAGACGCCTCTTAACTT
CATCTTTCTTTTCCTGTTCACCGTGGCGGAGTCGTTCCTTCTGGGTATGG
TCGCCGGACAGTTTGAGGCTGATGAGGTCCTGATGGCAGTGGGAATTACG
GCCGCGGTGGCCCTGGGACTCACCCTGTTTGCCCTGCAGACCAAATACGA
TTTTACGATGTGCGGAGGAGTGTTGGTGGCCTGTCTGGTGGTCTTCATCA
TTTTTGGTATAATCGCTATCTTCATACCGGGCAAGGTGATCGGACTGGTC
TATGCCTCCTTGGGAGCATTGCTCTTCTCCGTTTACTTGGTGTACGATAC
CCAGTTGATGCTGGGTGGTAATCATAAGTACTCCATCAGTCCTGAGGAAT
ACATCTTCGCCGCTCTAAACCTCTACCTGGACATTATTAACATCTTCATG
TACATACTGACCATTATCGGATTGTCTCGCAATTAGAAGCTTTCTAGACC
BS18163.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:17:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3814-PA | 720 | CG3814-RA | 1..720 | 17..736 | 3600 | 100 | Plus |
CG3814-PB | 735 | CG3814-RB | 43..735 | 44..736 | 3465 | 100 | Plus |
CG3798-PB | 942 | Nmda1-RB | 835..917 | 629..711 | 165 | 87.9 | Plus |
CG3798-PA | 942 | Nmda1-RA | 835..917 | 629..711 | 165 | 87.9 | Plus |
CG3798-PF | 951 | Nmda1-RF | 844..926 | 629..711 | 165 | 87.9 | Plus |
CG3798-PD | 975 | Nmda1-RD | 868..950 | 629..711 | 165 | 87.9 | Plus |
CG3798-PC | 975 | Nmda1-RC | 868..950 | 629..711 | 165 | 87.9 | Plus |
CG3798-PE | 975 | Nmda1-RE | 868..950 | 629..711 | 165 | 87.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:19:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3814-RD | 933 | CG3814-RD | 104..825 | 16..737 | 3610 | 100 | Plus |
CG3814-RA | 1073 | CG3814-RA | 244..965 | 16..737 | 3610 | 100 | Plus |
CG3814-RC | 1011 | CG3814-RC | 210..903 | 44..737 | 3470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12875272..12875780 | 737..229 | 2545 | 100 | Minus |
2R | 25286936 | 2R | 12875841..12875944 | 230..127 | 520 | 100 | Minus |
2R | 25286936 | 2R | 12876101..12876184 | 127..44 | 420 | 100 | Minus |
2R | 25286936 | 2R | 12877671..12878016 | 720..375 | 410 | 74.6 | Minus |
3R | 32079331 | 3R | 14152993..14153147 | 705..551 | 295 | 79.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:19:07 has no hits.
BS18163.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:17:15 Download gff for
BS18163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-PA | 1..720 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:49:32 Download gff for
BS18163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-RA | 244..967 | 16..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:08 Download gff for
BS18163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-RA | 244..967 | 16..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:08 Download gff for
BS18163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12875270..12875779 | 230..741 | 99 | <- | Minus |
2R | 12875842..12875943 | 128..229 | 100 | <- | Minus |
2R | 12876101..12876183 | 45..127 | 100 | <- | Minus |
2R | 12876262..12876290 | 16..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:49:32 Download gff for
BS18163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8762775..8763284 | 230..741 | 99 | <- | Minus |
arm_2R | 8763347..8763448 | 128..229 | 100 | <- | Minus |
arm_2R | 8763606..8763688 | 45..127 | 100 | <- | Minus |
arm_2R | 8763767..8763795 | 16..44 | 100 | | Minus |
BS18163.complete Sequence
752 bp assembled on 2007-06-21
GenBank Submission: KX804357
> BS18163.complete
GAAGTTATCAGTCGACATGAGCAGCGACAATCATTTTCAGTACGATGCGG
AAGCGGACAAGAGCTTCGCCTTCGATGACCAGAGCATCCGGAAGGGATTT
ATTCGAAAGGTCTACTTGATATTGATGTGCCAATTGCTGATCACTTTCGG
TTTTGTTAGCGTATTTACGTTCTCGAAAGCTTCGCAGGAATGGGTGCAAA
AAAATCCGGCACTGTTTTGGATAGCCTTGGCCGTTCTTATCGTGACCATG
ATCTGTATGGCCTGCTGCGAAAGTGTACGCCGTAAGACGCCTCTTAACTT
CATCTTTCTTTTCCTGTTCACCGTGGCGGAGTCGTTCCTTCTGGGTATGG
TCGCCGGACAGTTTGAGGCTGATGAGGTCCTGATGGCAGTGGGAATTACG
GCCGCGGTGGCCCTGGGACTCACCCTGTTTGCCCTGCAGACCAAATACGA
TTTTACGATGTGCGGAGGAGTGTTGGTGGCCTGTCTGGTGGTCTTCATCA
TTTTTGGTATAATCGCTATCTTCATACCGGGCAAGGTGATCGGACTGGTC
TATGCCTCCTTGGGAGCATTGCTCTTCTCCGTTTACTTGGTGTACGATAC
CCAGTTGATGCTGGGTGGTAATCATAAGTACTCCATCAGTCCTGAGGAAT
ACATCTTCGCCGCTCTAAACCTCTACCTGGACATTATTAACATCTTCATG
TACATACTGACCATTATCGGATTGTCTCGCAATTAGAAGCTTTCTAGACC
AT
BS18163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3814-RD | 720 | CG3814-PD | 1..720 | 17..736 | 3600 | 100 | Plus |
CG3814-RA | 720 | CG3814-PA | 1..720 | 17..736 | 3600 | 100 | Plus |
CG3814-RB | 735 | CG3814-PB | 43..735 | 44..736 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3814-RD | 933 | CG3814-RD | 104..825 | 16..737 | 3610 | 100 | Plus |
CG3814-RA | 1073 | CG3814-RA | 244..965 | 16..737 | 3610 | 100 | Plus |
CG3814-RC | 1011 | CG3814-RC | 210..903 | 44..737 | 3470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12875272..12875780 | 737..229 | 2545 | 100 | Minus |
2R | 25286936 | 2R | 12875841..12875944 | 230..127 | 520 | 100 | Minus |
2R | 25286936 | 2R | 12876101..12876184 | 127..44 | 420 | 100 | Minus |
2R | 25286936 | 2R | 12877671..12878016 | 720..375 | 410 | 74.6 | Minus |
3R | 32079331 | 3R | 14152993..14153147 | 705..551 | 295 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:40:49 has no hits.
BS18163.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:07 Download gff for
BS18163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-RA | 1..720 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:55 Download gff for
BS18163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-RA | 378..1101 | 16..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:57 Download gff for
BS18163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-RA | 245..964 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:28 Download gff for
BS18163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-RA | 245..964 | 17..736 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:28 Download gff for
BS18163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12875273..12875779 | 230..736 | 100 | <- | Minus |
2R | 12875842..12875943 | 128..229 | 100 | <- | Minus |
2R | 12876101..12876183 | 45..127 | 100 | <- | Minus |
2R | 12876262..12876289 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:57 Download gff for
BS18163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8762778..8763284 | 230..736 | 100 | <- | Minus |
arm_2R | 8763347..8763448 | 128..229 | 100 | <- | Minus |
arm_2R | 8763606..8763688 | 45..127 | 100 | <- | Minus |
arm_2R | 8763767..8763794 | 17..44 | 100 | | Minus |
BS18163.pep Sequence
Translation from 16 to 735
> BS18163.pep
MSSDNHFQYDAEADKSFAFDDQSIRKGFIRKVYLILMCQLLITFGFVSVF
TFSKASQEWVQKNPALFWIALAVLIVTMICMACCESVRRKTPLNFIFLFL
FTVAESFLLGMVAGQFEADEVLMAVGITAAVALGLTLFALQTKYDFTMCG
GVLVACLVVFIIFGIIAIFIPGKVIGLVYASLGALLFSVYLVYDTQLMLG
GNHKYSISPEEYIFAALNLYLDIINIFMYILTIIGLSRN*
BS18163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3814-PD | 239 | CG3814-PD | 1..239 | 1..239 | 1208 | 100 | Plus |
CG3814-PA | 239 | CG3814-PA | 1..239 | 1..239 | 1208 | 100 | Plus |
CG3814-PB | 244 | CG3814-PB | 15..244 | 10..239 | 1157 | 100 | Plus |
CG3814-PC | 203 | CG3814-PC | 1..203 | 37..239 | 1023 | 100 | Plus |
Nmda1-PH | 313 | CG3798-PH | 89..313 | 15..239 | 862 | 72.4 | Plus |