Clone Sequence Records
BS18171.3prime Sequence
894 bp (809 high quality bases) assembled on 2007-06-06
> BS18171.3prime
ATGGTCTAGAAAGCTTTCAAATCTCCAAATCTTCGGGATGATACAGTTCC
GTAAGGAGGCGGTACACATACGAGGGGGCATGGCCACCGGTGTTGGATAT
GAAAAGGGTGACCAGTTCCGGAGGCACGTAGTCGAACATGGGACTGTATA
CCTTGGCTTCGCGCGCTGGAATCGAATCGTAGGGTATCACATCCTCCGCA
CAGCCGACCATATTGAAGGCGTCCTGCTCGCACAGATGCAATGGTGAGAG
TTTGTACATGGGCGCCAGTACAATGACCGGCACGGAGTAATGCTTGGCGG
CCAGGGCCACTGTATACGCTCCACACGCCGCTCTGAGTCCTCCATTAGCC
AGCACGCTGTGCGTACCGATTATTACCTTGTTGACGCGCGACATCATAGC
GAAGATGGCCGCATCTGGGATCACAACAATCTCCACATTCTTCTCGTTGG
CCAAGCTGGCGGCCAAATTGTGACCCCGGCAGGCTGGCGCACATTCGGCT
ACGATGATGGTGAGAAACTGACGCTTTTTGATCGCCCTTTTGAGGAAATT
CTCGACGCTGCGCGAGTGTCCCAGTGTCAAGATGATCTCCGACGAATGGA
TGTGCTCCTCGGCCTGGACGCAGATGTTCTCCGAACTGGTCTCCAGCTCC
GTTTCCACCTCCTGCAGGTGGTCGAGCAGCGCTTCCCGCAATCCATGCTG
GGGCACCGAGTAATCTACGCTGACGTTGCTCTCGCTGGTCTGCGTGACTA
GCTTGTGAAGCGACAGCGAGGCCTGTGAGTCGTCCGCGAAGTGTTGCACC
TTGGCGTGCAACAGATCGAACTCCTCGCGAGTCAGCTTGAGGATCCGCCT
GGCAATGTTCGAGGTAACCGTCTCCTGGGGCAGAGCTGCCTGCA
BS18171.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:18:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2677-PA | 1059 | eIF2B-beta-RA | 182..1059 | 894..17 | 4390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF2B-beta-RA | 1357 | CG2677-RA | 329..1208 | 894..15 | 4400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2705031..2705450 | 894..475 | 2100 | 100 | Minus |
X | 23542271 | X | 2705539..2705925 | 476..90 | 1935 | 100 | Minus |
X | 23542271 | X | 2705994..2706068 | 89..15 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:40:47 has no hits.
BS18171.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:18:30 Download gff for
BS18171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2677-PA | 183..1059 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:21:21 Download gff for
BS18171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF2B-beta-RA | 330..1208 | 15..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:21 Download gff for
BS18171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF2B-beta-RA | 330..1208 | 15..893 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:21 Download gff for
BS18171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2705032..2705449 | 476..893 | 100 | -> | Minus |
X | 2705540..2705925 | 90..475 | 100 | -> | Minus |
X | 2705994..2706068 | 15..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:21:21 Download gff for
BS18171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2600027..2600101 | 15..89 | 100 | | Minus |
arm_X | 2599065..2599482 | 476..893 | 100 | -> | Minus |
arm_X | 2599573..2599958 | 90..475 | 100 | -> | Minus |
BS18171.5prime Sequence
875 bp (857 high quality bases) assembled on 2007-06-06
> BS18171.5prime
GAAGTTATCAGTCGACATGAAGGAACAGCCGCTAAAGGAGATCACACAGC
TCATCCACGCCATCAAAGTGGGGCTGGTGGAGGGATCCTACAACATAACC
AACAAGACGCTGGACATCTTCAAGTACATCATCATGAGCAAGAGCTGGCA
GAACGCCGATGCTCTCATGCAGATTGTGCGCGACCAGTGTAAGATCCTGC
AGGCAGCTCTGCCCCAGGAGACGGTTACCTCGAACATTGCCAGGCGGATC
CTCAAGCTGACTCGCGAGGAGTTCGATCTGTTGCACGCCAAGGTGCAACA
CTTCGCGGACGACTCACAGGCCTCGCTGTCGCTTCACAAGCTAGTCACGC
AGACCAGCGAGAGCAACGTCAGCGTAGATTACTCGGTGCCCCAGCATGGA
TTGCGGGAAGCGCTGCTCGACCACCTGCAGGAGGTGGAAACGGAGCTGGA
GACCAGTTCGGAGAACATCTGCGTCCAGGCCGAGGAGCACATCCATTCGT
CGGAGATCATCTTGACACTGGGACACTCGCGCAGCGTCGAGAATTTCCTC
AAAAGGGCGATCAAAAAGCGTCAGTTTCTCACCATCATCGTAGCCGAATG
TGCGCCAGCCTGCCGGGGTCACAATTTGGCCGCCAGCTTGGCCAACGAGA
AGAATGTGGAGATTGTTGTGATCCCAGATGCGGCCATCTTCGCTATGATG
TCGCGCGTCAACAAGGTAATAATCGGTACGCACAGCGTGCTGGCTAATGG
AGGACTCAGAGCGGCGTGTGGAGCGTATACAGTGGCCCTGGCCGCCAAGC
ATTACTCCGTGCCGGTCATTGTACTGGCGCCCATGTACAAACTCTCACCA
TTGCATCTGTGCGAGCAGGACGCCT
BS18171.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:18:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2677-PA | 1059 | eIF2B-beta-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:48:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF2B-beta-RA | 1357 | CG2677-RA | 148..1006 | 17..875 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2704993..2705450 | 160..617 | 2290 | 100 | Plus |
X | 23542271 | X | 2705539..2705798 | 616..875 | 1300 | 100 | Plus |
X | 23542271 | X | 2704836..2704923 | 72..159 | 440 | 100 | Plus |
X | 23542271 | X | 2704718..2704774 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:48:19 has no hits.
BS18171.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:18:35 Download gff for
BS18171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2677-PA | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:03:31 Download gff for
BS18171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF2B-beta-RA | 148..1006 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:28:57 Download gff for
BS18171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF2B-beta-RA | 148..1006 | 17..875 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:28:57 Download gff for
BS18171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2705540..2705798 | 617..875 | 100 | | Plus |
X | 2704718..2704773 | 17..72 | 100 | -> | Plus |
X | 2704837..2704923 | 73..159 | 100 | -> | Plus |
X | 2704993..2705449 | 160..616 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:03:31 Download gff for
BS18171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2598751..2598806 | 17..72 | 100 | -> | Plus |
arm_X | 2598870..2598956 | 73..159 | 100 | -> | Plus |
arm_X | 2599026..2599482 | 160..616 | 100 | -> | Plus |
arm_X | 2599573..2599831 | 617..875 | 100 | | Plus |
BS18171.complete Sequence
1091 bp assembled on 2007-06-21
GenBank Submission: KX805366
> BS18171.complete
GAAGTTATCAGTCGACATGAAGGAACAGCCGCTAAAGGAGATCACACAGC
TCATCCACGCCATCAAAGTGGGGCTGGTGGAGGGATCCTACAACATAACC
AACAAGACGCTGGACATCTTCAAGTACATCATCATGAGCAAGAGCTGGCA
GAACGCCGATGCTCTCATGCAGATTGTGCGCGACCAGTGTAAGATCCTGC
AGGCAGCTCTGCCCCAGGAGACGGTTACCTCGAACATTGCCAGGCGGATC
CTCAAGCTGACTCGCGAGGAGTTCGATCTGTTGCACGCCAAGGTGCAACA
CTTCGCGGACGACTCACAGGCCTCGCTGTCGCTTCACAAGCTAGTCACGC
AGACCAGCGAGAGCAACGTCAGCGTAGATTACTCGGTGCCCCAGCATGGA
TTGCGGGAAGCGCTGCTCGACCACCTGCAGGAGGTGGAAACGGAGCTGGA
GACCAGTTCGGAGAACATCTGCGTCCAGGCCGAGGAGCACATCCATTCGT
CGGAGATCATCTTGACACTGGGACACTCGCGCAGCGTCGAGAATTTCCTC
AAAAGGGCGATCAAAAAGCGTCAGTTTCTCACCATCATCGTAGCCGAATG
TGCGCCAGCCTGCCGGGGTCACAATTTGGCCGCCAGCTTGGCCAACGAGA
AGAATGTGGAGATTGTTGTGATCCCAGATGCGGCCATCTTCGCTATGATG
TCGCGCGTCAACAAGGTAATAATCGGTACGCACAGCGTGCTGGCTAATGG
AGGACTCAGAGCGGCGTGTGGAGCGTATACAGTGGCCCTGGCCGCCAAGC
ATTACTCCGTGCCGGTCATTGTACTGGCGCCCATGTACAAACTCTCACCA
TTGCATCTGTGCGAGCAGGACGCCTTCAATATGGTCGGCTGTGCGGAGGA
TGTGATACCCTACGATTCGATTCCAGCGCGCGAAGCCAAGGTATACAGTC
CCATGTTCGACTACGTGCCTCCGGAACTGGTCACCCTTTTCATATCCAAC
ACCGGTGGCCATGCCCCCTCGTATGTGTACCGCCTCCTTACGGAACTGTA
TCATCCCGAAGATTTGGAGATTTGAAAGCTTTCTAGACCAT
BS18171.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF2B-beta-RA | 1059 | CG2677-PA | 1..1059 | 17..1075 | 5295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF2B-beta-RA | 1357 | CG2677-RA | 148..1208 | 17..1077 | 5305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:54:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2704993..2705450 | 160..617 | 2290 | 100 | Plus |
X | 23542271 | X | 2705539..2705925 | 616..1002 | 1935 | 100 | Plus |
X | 23542271 | X | 2704836..2704923 | 72..159 | 440 | 100 | Plus |
X | 23542271 | X | 2705994..2706068 | 1003..1077 | 375 | 100 | Plus |
X | 23542271 | X | 2704718..2704774 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:54:08 has no hits.
BS18171.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:54 Download gff for
BS18171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF2B-beta-RA | 1..1059 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:57:24 Download gff for
BS18171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF2B-beta-RA | 143..1201 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:12:39 Download gff for
BS18171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF2B-beta-RA | 148..1205 | 17..1074 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:54 Download gff for
BS18171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF2B-beta-RA | 143..1201 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:30:08 Download gff for
BS18171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF2B-beta-RA | 148..1205 | 17..1074 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:30:08 Download gff for
BS18171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2704718..2704773 | 17..72 | 100 | -> | Plus |
X | 2704837..2704923 | 73..159 | 100 | -> | Plus |
X | 2704993..2705449 | 160..616 | 100 | -> | Plus |
X | 2705540..2705925 | 617..1002 | 100 | -> | Plus |
X | 2705994..2706065 | 1003..1074 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:12:39 Download gff for
BS18171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2598751..2598806 | 17..72 | 100 | -> | Plus |
arm_X | 2598870..2598956 | 73..159 | 100 | -> | Plus |
arm_X | 2599026..2599482 | 160..616 | 100 | -> | Plus |
arm_X | 2599573..2599958 | 617..1002 | 100 | -> | Plus |
arm_X | 2600027..2600098 | 1003..1074 | 100 | | Plus |
BS18171.pep Sequence
Translation from 16 to 1074
> BS18171.pep
MKEQPLKEITQLIHAIKVGLVEGSYNITNKTLDIFKYIIMSKSWQNADAL
MQIVRDQCKILQAALPQETVTSNIARRILKLTREEFDLLHAKVQHFADDS
QASLSLHKLVTQTSESNVSVDYSVPQHGLREALLDHLQEVETELETSSEN
ICVQAEEHIHSSEIILTLGHSRSVENFLKRAIKKRQFLTIIVAECAPACR
GHNLAASLANEKNVEIVVIPDAAIFAMMSRVNKVIIGTHSVLANGGLRAA
CGAYTVALAAKHYSVPVIVLAPMYKLSPLHLCEQDAFNMVGCAEDVIPYD
SIPAREAKVYSPMFDYVPPELVTLFISNTGGHAPSYVYRLLTELYHPEDL
EI*
BS18171.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF2B-beta-PA | 352 | CG2677-PA | 1..352 | 1..352 | 1787 | 100 | Plus |
eIF2B-delta-PD | 576 | CG10315-PD | 306..554 | 89..327 | 183 | 23.2 | Plus |
eIF2B-delta-PB | 576 | CG10315-PB | 306..554 | 89..327 | 183 | 23.2 | Plus |
eIF2B-delta-PC | 576 | CG10315-PC | 306..554 | 89..327 | 183 | 23.2 | Plus |
eIF2B-alpha-PA | 306 | CG7883-PA | 97..305 | 130..345 | 180 | 27.6 | Plus |