Clone BS18171 Report

Search the DGRC for BS18171

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:181
Well:71
Vector:pDNR-Dual
Associated Gene/TranscripteIF2B-beta-RA
Protein status:BS18171.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS18171.3prime Sequence

894 bp (809 high quality bases) assembled on 2007-06-06

> BS18171.3prime
ATGGTCTAGAAAGCTTTCAAATCTCCAAATCTTCGGGATGATACAGTTCC
GTAAGGAGGCGGTACACATACGAGGGGGCATGGCCACCGGTGTTGGATAT
GAAAAGGGTGACCAGTTCCGGAGGCACGTAGTCGAACATGGGACTGTATA
CCTTGGCTTCGCGCGCTGGAATCGAATCGTAGGGTATCACATCCTCCGCA
CAGCCGACCATATTGAAGGCGTCCTGCTCGCACAGATGCAATGGTGAGAG
TTTGTACATGGGCGCCAGTACAATGACCGGCACGGAGTAATGCTTGGCGG
CCAGGGCCACTGTATACGCTCCACACGCCGCTCTGAGTCCTCCATTAGCC
AGCACGCTGTGCGTACCGATTATTACCTTGTTGACGCGCGACATCATAGC
GAAGATGGCCGCATCTGGGATCACAACAATCTCCACATTCTTCTCGTTGG
CCAAGCTGGCGGCCAAATTGTGACCCCGGCAGGCTGGCGCACATTCGGCT
ACGATGATGGTGAGAAACTGACGCTTTTTGATCGCCCTTTTGAGGAAATT
CTCGACGCTGCGCGAGTGTCCCAGTGTCAAGATGATCTCCGACGAATGGA
TGTGCTCCTCGGCCTGGACGCAGATGTTCTCCGAACTGGTCTCCAGCTCC
GTTTCCACCTCCTGCAGGTGGTCGAGCAGCGCTTCCCGCAATCCATGCTG
GGGCACCGAGTAATCTACGCTGACGTTGCTCTCGCTGGTCTGCGTGACTA
GCTTGTGAAGCGACAGCGAGGCCTGTGAGTCGTCCGCGAAGTGTTGCACC
TTGGCGTGCAACAGATCGAACTCCTCGCGAGTCAGCTTGAGGATCCGCCT
GGCAATGTTCGAGGTAACCGTCTCCTGGGGCAGAGCTGCCTGCA

BS18171.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG2677-PA 1059 eIF2B-beta-RA 182..1059 894..17 4390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-beta-RA 1357 CG2677-RA 329..1208 894..15 4400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2705031..2705450 894..475 2100 100 Minus
X 23542271 X 2705539..2705925 476..90 1935 100 Minus
X 23542271 X 2705994..2706068 89..15 375 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:40:47 has no hits.

BS18171.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:18:30 Download gff for BS18171.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2677-PA 183..1059 17..893 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:21:21 Download gff for BS18171.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 330..1208 15..893 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:21 Download gff for BS18171.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 330..1208 15..893 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:21 Download gff for BS18171.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2705032..2705449 476..893 100 -> Minus
X 2705540..2705925 90..475 100 -> Minus
X 2705994..2706068 15..89 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:21:21 Download gff for BS18171.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2600027..2600101 15..89 100   Minus
arm_X 2599065..2599482 476..893 100 -> Minus
arm_X 2599573..2599958 90..475 100 -> Minus

BS18171.5prime Sequence

875 bp (857 high quality bases) assembled on 2007-06-06

> BS18171.5prime
GAAGTTATCAGTCGACATGAAGGAACAGCCGCTAAAGGAGATCACACAGC
TCATCCACGCCATCAAAGTGGGGCTGGTGGAGGGATCCTACAACATAACC
AACAAGACGCTGGACATCTTCAAGTACATCATCATGAGCAAGAGCTGGCA
GAACGCCGATGCTCTCATGCAGATTGTGCGCGACCAGTGTAAGATCCTGC
AGGCAGCTCTGCCCCAGGAGACGGTTACCTCGAACATTGCCAGGCGGATC
CTCAAGCTGACTCGCGAGGAGTTCGATCTGTTGCACGCCAAGGTGCAACA
CTTCGCGGACGACTCACAGGCCTCGCTGTCGCTTCACAAGCTAGTCACGC
AGACCAGCGAGAGCAACGTCAGCGTAGATTACTCGGTGCCCCAGCATGGA
TTGCGGGAAGCGCTGCTCGACCACCTGCAGGAGGTGGAAACGGAGCTGGA
GACCAGTTCGGAGAACATCTGCGTCCAGGCCGAGGAGCACATCCATTCGT
CGGAGATCATCTTGACACTGGGACACTCGCGCAGCGTCGAGAATTTCCTC
AAAAGGGCGATCAAAAAGCGTCAGTTTCTCACCATCATCGTAGCCGAATG
TGCGCCAGCCTGCCGGGGTCACAATTTGGCCGCCAGCTTGGCCAACGAGA
AGAATGTGGAGATTGTTGTGATCCCAGATGCGGCCATCTTCGCTATGATG
TCGCGCGTCAACAAGGTAATAATCGGTACGCACAGCGTGCTGGCTAATGG
AGGACTCAGAGCGGCGTGTGGAGCGTATACAGTGGCCCTGGCCGCCAAGC
ATTACTCCGTGCCGGTCATTGTACTGGCGCCCATGTACAAACTCTCACCA
TTGCATCTGTGCGAGCAGGACGCCT

BS18171.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG2677-PA 1059 eIF2B-beta-RA 1..859 17..875 4295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-beta-RA 1357 CG2677-RA 148..1006 17..875 4295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2704993..2705450 160..617 2290 100 Plus
X 23542271 X 2705539..2705798 616..875 1300 100 Plus
X 23542271 X 2704836..2704923 72..159 440 100 Plus
X 23542271 X 2704718..2704774 17..73 285 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:48:19 has no hits.

BS18171.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:18:35 Download gff for BS18171.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2677-PA 1..859 17..875 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:03:31 Download gff for BS18171.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 148..1006 17..875 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:28:57 Download gff for BS18171.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 148..1006 17..875 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:28:57 Download gff for BS18171.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2705540..2705798 617..875 100   Plus
X 2704718..2704773 17..72 100 -> Plus
X 2704837..2704923 73..159 100 -> Plus
X 2704993..2705449 160..616 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:03:31 Download gff for BS18171.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2598751..2598806 17..72 100 -> Plus
arm_X 2598870..2598956 73..159 100 -> Plus
arm_X 2599026..2599482 160..616 100 -> Plus
arm_X 2599573..2599831 617..875 100   Plus

BS18171.complete Sequence

1091 bp assembled on 2007-06-21

GenBank Submission: KX805366

> BS18171.complete
GAAGTTATCAGTCGACATGAAGGAACAGCCGCTAAAGGAGATCACACAGC
TCATCCACGCCATCAAAGTGGGGCTGGTGGAGGGATCCTACAACATAACC
AACAAGACGCTGGACATCTTCAAGTACATCATCATGAGCAAGAGCTGGCA
GAACGCCGATGCTCTCATGCAGATTGTGCGCGACCAGTGTAAGATCCTGC
AGGCAGCTCTGCCCCAGGAGACGGTTACCTCGAACATTGCCAGGCGGATC
CTCAAGCTGACTCGCGAGGAGTTCGATCTGTTGCACGCCAAGGTGCAACA
CTTCGCGGACGACTCACAGGCCTCGCTGTCGCTTCACAAGCTAGTCACGC
AGACCAGCGAGAGCAACGTCAGCGTAGATTACTCGGTGCCCCAGCATGGA
TTGCGGGAAGCGCTGCTCGACCACCTGCAGGAGGTGGAAACGGAGCTGGA
GACCAGTTCGGAGAACATCTGCGTCCAGGCCGAGGAGCACATCCATTCGT
CGGAGATCATCTTGACACTGGGACACTCGCGCAGCGTCGAGAATTTCCTC
AAAAGGGCGATCAAAAAGCGTCAGTTTCTCACCATCATCGTAGCCGAATG
TGCGCCAGCCTGCCGGGGTCACAATTTGGCCGCCAGCTTGGCCAACGAGA
AGAATGTGGAGATTGTTGTGATCCCAGATGCGGCCATCTTCGCTATGATG
TCGCGCGTCAACAAGGTAATAATCGGTACGCACAGCGTGCTGGCTAATGG
AGGACTCAGAGCGGCGTGTGGAGCGTATACAGTGGCCCTGGCCGCCAAGC
ATTACTCCGTGCCGGTCATTGTACTGGCGCCCATGTACAAACTCTCACCA
TTGCATCTGTGCGAGCAGGACGCCTTCAATATGGTCGGCTGTGCGGAGGA
TGTGATACCCTACGATTCGATTCCAGCGCGCGAAGCCAAGGTATACAGTC
CCATGTTCGACTACGTGCCTCCGGAACTGGTCACCCTTTTCATATCCAAC
ACCGGTGGCCATGCCCCCTCGTATGTGTACCGCCTCCTTACGGAACTGTA
TCATCCCGAAGATTTGGAGATTTGAAAGCTTTCTAGACCAT

BS18171.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-beta-RA 1059 CG2677-PA 1..1059 17..1075 5295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-beta-RA 1357 CG2677-RA 148..1208 17..1077 5305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2704993..2705450 160..617 2290 100 Plus
X 23542271 X 2705539..2705925 616..1002 1935 100 Plus
X 23542271 X 2704836..2704923 72..159 440 100 Plus
X 23542271 X 2705994..2706068 1003..1077 375 100 Plus
X 23542271 X 2704718..2704774 17..73 285 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:54:08 has no hits.

BS18171.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:54 Download gff for BS18171.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 1..1059 17..1075 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:57:24 Download gff for BS18171.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 143..1201 17..1075 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:12:39 Download gff for BS18171.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 148..1205 17..1074 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:54 Download gff for BS18171.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 143..1201 17..1075 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:30:08 Download gff for BS18171.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 148..1205 17..1074 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:30:08 Download gff for BS18171.complete
Subject Subject Range Query Range Percent Splice Strand
X 2704718..2704773 17..72 100 -> Plus
X 2704837..2704923 73..159 100 -> Plus
X 2704993..2705449 160..616 100 -> Plus
X 2705540..2705925 617..1002 100 -> Plus
X 2705994..2706065 1003..1074 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:12:39 Download gff for BS18171.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2598751..2598806 17..72 100 -> Plus
arm_X 2598870..2598956 73..159 100 -> Plus
arm_X 2599026..2599482 160..616 100 -> Plus
arm_X 2599573..2599958 617..1002 100 -> Plus
arm_X 2600027..2600098 1003..1074 100   Plus

BS18171.pep Sequence

Translation from 16 to 1074

> BS18171.pep
MKEQPLKEITQLIHAIKVGLVEGSYNITNKTLDIFKYIIMSKSWQNADAL
MQIVRDQCKILQAALPQETVTSNIARRILKLTREEFDLLHAKVQHFADDS
QASLSLHKLVTQTSESNVSVDYSVPQHGLREALLDHLQEVETELETSSEN
ICVQAEEHIHSSEIILTLGHSRSVENFLKRAIKKRQFLTIIVAECAPACR
GHNLAASLANEKNVEIVVIPDAAIFAMMSRVNKVIIGTHSVLANGGLRAA
CGAYTVALAAKHYSVPVIVLAPMYKLSPLHLCEQDAFNMVGCAEDVIPYD
SIPAREAKVYSPMFDYVPPELVTLFISNTGGHAPSYVYRLLTELYHPEDL
EI*

BS18171.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-beta-PA 352 CG2677-PA 1..352 1..352 1787 100 Plus
eIF2B-delta-PD 576 CG10315-PD 306..554 89..327 183 23.2 Plus
eIF2B-delta-PB 576 CG10315-PB 306..554 89..327 183 23.2 Plus
eIF2B-delta-PC 576 CG10315-PC 306..554 89..327 183 23.2 Plus
eIF2B-alpha-PA 306 CG7883-PA 97..305 130..345 180 27.6 Plus