Clone Sequence Records
BS18190.3prime Sequence
804 bp (721 high quality bases) assembled on 2007-06-06
> BS18190.3prime
ATGGTCTAGAAAGCTTTTATTTCTTCTTCTGTGCCTTCTCAGCGGCTTTT
GTCACCTTGCCCGAGGTCGTCTCTTTAAAGTTCACCGACTTGATGACGCC
CACGGCCACGGTCTGCCTCATGTCGCGCACAGCGAACCGTCCCAGCGGTG
GGAACTCCTGGAAGCTCTCTACGCACAACGGCTTGCTGGGCACCAGCACA
ATGATGGCCGCATCCCCGGACTTGATAGCCTTCGGCTCCGTCTCGGTGGT
CTTGCCCGTACGGCGGTCGCACTTCTCCTTGATCTCGGAAAACTTGCAGG
CAATGTGCGCCGTGTGGCAATCCAAGACGGGAGTGTACCCATTGGCGATC
TGGCCCGGATGGTTGAGCACAATCACCTGAGCGGTAAAGTCGGCTGCTCC
CCTAGGAGGATTGTTCTTGGAATCGCCGGCCACATAGCCACGACGGAGCT
CCTTCACGGACACGTTCTTCACGTTGAAGCCAACGTTGTCGCCGGGCATG
GCTTCGGTGAGAGCCTCGTGGTGCATCTCCACAGACTTTACTTCGGTGAC
CAGGTTGACCGGCGCAAAGTTGACGACCATGCCTGGCTTGAGGAGACCAG
TCTCCACACGACCTACTGGTACGGTTCCGATGCCTCCGATCTTGTAGACG
TCCTGGAGCGGCAGGCGCAGCGGCTTGTCGGTGGGACGCTGGGGTGGAAG
GATCGCGTCCAGCGCGTCGATCAAGCACTTGCCCTCTGGCTTGGCCTTCC
TTGCGCTCCACGGACCATCCCTTGAACCAGGGCATCTTCTCGGACGGCTC
CAGC
BS18190.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:20:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1873-PA | 1389 | Ef1alpha100E-RA | 668..1389 | 738..17 | 3610 | 100 | Minus |
| CG1873-PB | 1389 | Ef1alpha100E-RB | 668..1389 | 738..17 | 3610 | 100 | Minus |
| CG1873-PC | 1389 | Ef1alpha100E-RC | 668..1389 | 738..17 | 3610 | 100 | Minus |
| CG1873-PD | 1389 | Ef1alpha100E-RD | 668..1389 | 738..17 | 3610 | 100 | Minus |
| CG1873-PA | 1389 | Ef1alpha100E-RA | 603..663 | 804..744 | 305 | 100 | Minus |
| CG1873-PB | 1389 | Ef1alpha100E-RB | 603..663 | 804..744 | 305 | 100 | Minus |
| CG1873-PC | 1389 | Ef1alpha100E-RC | 603..663 | 804..744 | 305 | 100 | Minus |
| CG1873-PD | 1389 | Ef1alpha100E-RD | 603..663 | 804..744 | 305 | 100 | Minus |
| CG8280-PA | 1392 | Ef1alpha48D-RA | 910..971 | 496..435 | 235 | 95.1 | Minus |
| CG8280-PB | 1392 | Ef1alpha48D-RB | 910..971 | 496..435 | 235 | 95.1 | Minus |
| CG8280-PA | 1392 | Ef1alpha48D-RA | 1242..1301 | 164..105 | 175 | 91.6 | Minus |
| CG8280-PB | 1392 | Ef1alpha48D-RB | 1242..1301 | 164..105 | 175 | 91.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:32:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1alpha100E-RD | 2603 | CG1873-RD | 780..1566 | 804..17 | 3900 | 99.7 | Minus |
| Ef1alpha100E-RC | 2591 | CG1873-RC | 768..1554 | 804..17 | 3900 | 99.7 | Minus |
| Ef1alpha100E-RB | 2594 | CG1873-RB | 771..1557 | 804..17 | 3900 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31741907..31742269 | 379..17 | 1815 | 100 | Minus |
| 2R | 25286936 | 2R | 11894196..11894947 | 785..33 | 1360 | 79 | Minus |
| 3R | 32079331 | 3R | 31741624..31741834 | 585..375 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 31740949..31741170 | 804..582 | 1050 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:32:54 has no hits.
BS18190.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:20:44 Download gff for
BS18190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1873-PD | 603..1389 | 17..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:41:09 Download gff for
BS18190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha100E-RB | 771..1557 | 17..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:05 Download gff for
BS18190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha100E-RB | 771..1557 | 17..804 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:05 Download gff for
BS18190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31740949..31741169 | 583..804 | 99 | -> | Minus |
| 3R | 31741627..31741832 | 377..582 | 100 | -> | Minus |
| 3R | 31741910..31742269 | 17..376 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:41:09 Download gff for
BS18190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27566671..27566891 | 583..804 | 99 | -> | Minus |
| arm_3R | 27567349..27567554 | 377..582 | 100 | -> | Minus |
| arm_3R | 27567632..27567991 | 17..376 | 100 | | Minus |
BS18190.5prime Sequence
725 bp (643 high quality bases) assembled on 2007-06-06
> BS18190.5prime
GAAGTTATCAGTCGACATGGGCAAGGAGAAGATCCATATTAACATTGTGG
TCATTGGCCATGTGGACTCCGGCAAGTCGACGACCACCGGCCACTTGATC
TACAAATGCGGCGGCATCGACAAGCGTACGATTGAGAAGTTCGAGAAGGA
GGCCCAGGAAATGGGAAAAGGCTCCTTTAAGTACGCCTGGGTACTGGACA
AGCTGAAGGCAGAGCGGGAGCGGGGCATCACCATCGACATTGCCCTATGG
AAGTTCGAGACGTCCAAGTACTATGTGACCATCATCGATGCCCCTGGTCA
CAGGGATTTCATCAAGAACATGATTACCGGTACCTCTCAGGCCGATTGTG
CGGTGCTGATCGTCGCCGCCGGAACTGGAGAGTTCGAGGCCGGGATCTCG
AAGAACGGCCAGACCCGCGAGCACGCCCTTCTGGCATTCACGCTGGGCGT
GAAGCAGCTTATTGTGGGCGTCAACAAGATGGACTCCACTGAGCCGCCGT
ACAGCGAGGCCCGCTACGAGGAGATCAAGAAGGAGGTGTCCTCGTACATC
AAGAAGATCGGCTACAATCCGGCCTCGGTGGCCTTCGTGCCCATCTCCGG
ATGGCACGGCGACAATATGCTGGAGCCGTCCGAGAAGATGCCCTGGTTCA
AGGGATGGTCCGTGGACCGCAGGGAAGGCAAGGCAGAGGGCAAGTGCTTG
ATCGACGCGCTGGACGCGATCCTTC
BS18190.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1873-PA | 1389 | Ef1alpha100E-RA | 1..709 | 17..725 | 3495 | 99.7 | Plus |
| CG1873-PB | 1389 | Ef1alpha100E-RB | 1..709 | 17..725 | 3495 | 99.7 | Plus |
| CG1873-PC | 1389 | Ef1alpha100E-RC | 1..709 | 17..725 | 3495 | 99.7 | Plus |
| CG1873-PD | 1389 | Ef1alpha100E-RD | 1..709 | 17..725 | 3495 | 99.7 | Plus |
| CG8280-PA | 1392 | Ef1alpha48D-RA | 52..443 | 68..459 | 835 | 88.5 | Plus |
| CG8280-PB | 1392 | Ef1alpha48D-RB | 52..443 | 68..459 | 835 | 88.5 | Plus |
| CG8280-PA | 1392 | Ef1alpha48D-RA | 457..551 | 473..567 | 250 | 90.5 | Plus |
| CG8280-PB | 1392 | Ef1alpha48D-RB | 457..551 | 473..567 | 250 | 90.5 | Plus |
| CG8280-PA | 1392 | Ef1alpha48D-RA | 565..599 | 581..615 | 150 | 97.1 | Plus |
| CG8280-PB | 1392 | Ef1alpha48D-RB | 565..599 | 581..615 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1alpha100E-RD | 2603 | CG1873-RD | 178..886 | 17..725 | 3515 | 99.7 | Plus |
| Ef1alpha100E-RC | 2591 | CG1873-RC | 166..874 | 17..725 | 3515 | 99.7 | Plus |
| Ef1alpha100E-RB | 2594 | CG1873-RB | 169..877 | 17..725 | 3515 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31740347..31741055 | 17..725 | 3515 | 99.7 | Plus |
| 2R | 25286936 | 2R | 11893573..11894283 | 15..725 | 2025 | 85.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:33:05 has no hits.
BS18190.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:20:49 Download gff for
BS18190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1873-PD | 1..709 | 17..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:41:11 Download gff for
BS18190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha100E-RB | 166..877 | 10..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:16 Download gff for
BS18190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha100E-RB | 166..877 | 10..725 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:16 Download gff for
BS18190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31740344..31741055 | 10..725 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:41:11 Download gff for
BS18190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27566066..27566777 | 10..725 | 99 | | Plus |
BS18190.complete Sequence
1421 bp assembled on 2009-08-24
GenBank Submission: KX806539
> BS18190.complete
GAAGTTATCAGTCGACATGGGCAAGGAGAAGATCCATATTAACATTGTGG
TCATTGGCCATGTGGACTCCGGCAAGTCGACGACCACCGGCCACTTGATC
TACAAATGCGGCGGCATCGACAAGCGTACGATTGAGAAGTTCGAGAAGGA
GGCCCAGGAAATGGGAAAAGGCTCCTTTAAGTACGCCTGGGTACTGGACA
AGCTGAAGGCAGAGCGGGAGCGGGGCATCACCATCGACATTGCCCTATGG
AAGTTCGAGACGTCCAAGTACTATGTGACCATCATCGATGCCCCTGGTCA
CAGGGATTTCATCAAGAACATGATTACCGGTACCTCTCAGGCCGATTGTG
CGGTGCTGATCGTCGCCGCCGGAACTGGAGAGTTCGAGGCCGGGATCTCG
AAGAACGGCCAGACCCGCGAGCACGCCCTTCTGGCATTCACGCTGGGCGT
GAAGCAGCTTATTGTGGGCGTCAACAAGATGGACTCCACTGAGCCGCCGT
ACAGCGAGGCCCGCTACGAGGAGATCAAGAAGGAGGTGTCCTCGTACATC
AAGAAGATCGGCTACAATCCGGCCTCGGTGGCCTTCGTGCCCATCTCCGG
ATGGCACGGCGACAATATGCTGGAGCCGTCCGAGAAGATGCCCTGGTTCA
AGGGATGGTCCGTGGAGCGCAAGGAAGGCAAGGCAGAGGGCAAGTGCTTG
ATCGACGCGCTGGACGCGATCCTTCCACCCCAGCGTCCCACCGACAAGCC
GCTGCGCCTGCCGCTCCAGGACGTCTACAAGATCGGAGGCATCGGAACCG
TACCAGTAGGTCGTGTGGAGACTGGTCTCCTCAAGCCAGGCATGGTCGTC
AACTTTGCGCCGGTCAACCTGGTCACCGAAGTAAAGTCTGTGGAGATGCA
CCACGAGGCTCTCACCGAAGCCATGCCCGGCGACAACGTTGGCTTCAACG
TGAAGAACGTGTCCGTGAAGGAGCTCCGTCGTGGCTATGTGGCCGGCGAT
TCCAAGAACAATCCTCCTAGGGGAGCAGCCGACTTTACCGCTCAGGTGAT
TGTGCTCAACCATCCGGGCCAGATCGCCAATGGGTACACTCCCGTCTTGG
ATTGCCACACGGCGCACATTGCCTGCAAGTTTTCCGAGATCAAGGAGAAG
TGCGACCGCCGTACGGGCAAGACCACCGAGACGGAGCCGAAGGCTATCAA
GTCCGGGGATGCGGCCATCATTGTGCTGGTGCCCAGCAAGCCGTTGTGCG
TAGAGAGCTTCCAGGAGTTCCCACCGCTGGGACGGTTCGCTGTGCGCGAC
ATGAGGCAGACCGTGGCCGTGGGCGTCATCAAGTCGGTGAACTTTAAAGA
GACGACCTCGGGCAAGGTGACAAAAGCCGCTGAGAAGGCACAGAAGAAGA
AATAAAAGCTTTCTAGACCAT
BS18190.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1alpha100E-RD | 1389 | CG1873-PD | 1..1389 | 17..1405 | 6945 | 100 | Plus |
| Ef1alpha100E-RC | 1389 | CG1873-PC | 1..1389 | 17..1405 | 6945 | 100 | Plus |
| Ef1alpha100E-RB | 1389 | CG1873-PB | 1..1389 | 17..1405 | 6945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1alpha100E-RD | 2603 | CG1873-RD | 178..1566 | 17..1405 | 6945 | 100 | Plus |
| Ef1alpha100E-RC | 2591 | CG1873-RC | 166..1554 | 17..1405 | 6945 | 100 | Plus |
| Ef1alpha100E-RB | 2594 | CG1873-RB | 169..1557 | 17..1405 | 6945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31740347..31741170 | 17..840 | 4120 | 100 | Plus |
| 2R | 25286936 | 2R | 11893573..11894947 | 15..1389 | 3275 | 82.5 | Plus |
| 3R | 32079331 | 3R | 31741907..31742269 | 1043..1405 | 1815 | 100 | Plus |
| 3R | 32079331 | 3R | 31741624..31741834 | 837..1047 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:32:31 has no hits.
BS18190.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:48 Download gff for
BS18190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha100E-RC | 166..1545 | 17..1396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:35 Download gff for
BS18190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha100E-RB | 169..1548 | 17..1396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:02 Download gff for
BS18190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha100E-RB | 169..1548 | 17..1396 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:02 Download gff for
BS18190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31740347..31741169 | 17..839 | 100 | -> | Plus |
| 3R | 31741627..31741832 | 840..1045 | 100 | -> | Plus |
| 3R | 31741910..31742260 | 1046..1396 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:35 Download gff for
BS18190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27566069..27566891 | 17..839 | 100 | -> | Plus |
| arm_3R | 27567349..27567554 | 840..1045 | 100 | -> | Plus |
| arm_3R | 27567632..27567982 | 1046..1396 | 100 | | Plus |
BS18190.pep Sequence
Translation from 16 to 1404
> BS18190.pep
MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG
KGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIK
NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV
GVNKMDSTEPPYSEARYEEIKKEVSSYIKKIGYNPASVAFVPISGWHGDN
MLEPSEKMPWFKGWSVERKEGKAEGKCLIDALDAILPPQRPTDKPLRLPL
QDVYKIGGIGTVPVGRVETGLLKPGMVVNFAPVNLVTEVKSVEMHHEALT
EAMPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHP
GQIANGYTPVLDCHTAHIACKFSEIKEKCDRRTGKTTETEPKAIKSGDAA
IIVLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVNFKETTSGK
VTKAAEKAQKKK*
BS18190.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:45:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1alpha100E-PD | 462 | CG1873-PD | 1..462 | 1..462 | 2407 | 100 | Plus |
| Ef1alpha100E-PC | 462 | CG1873-PC | 1..462 | 1..462 | 2407 | 100 | Plus |
| Ef1alpha100E-PB | 462 | CG1873-PB | 1..462 | 1..462 | 2407 | 100 | Plus |
| Ef1alpha100E-PA | 462 | CG1873-PA | 1..462 | 1..462 | 2407 | 100 | Plus |
| Ef1alpha48D-PC | 463 | CG8280-PC | 1..462 | 1..462 | 2224 | 92 | Plus |
