Clone BS18194 Report

Search the DGRC for BS18194

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:181
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG33932-RA
Protein status:BS18194.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS18194.5prime Sequence

477 bp (477 high quality bases) assembled on 2007-06-06

> BS18194.5prime
GAAGTTATCACTCGACATGTTCAAACTCTCGGAGCTGGTGCGCTGGCTGG
GGCTCACCGAGTTCGAGATTCTGGTCAATCTGTGCGGCCTGCTGGTGTTC
ACCATCACGCTGACCGTCAAGCTCCATCTGCAGGCCAGGGCCGGACCCGG
TGGCATACTCCCGGAGCCCATGGGCGACTGGTTCACCGTCTTCAGCCCCC
TGTTCTTCATCGACATCTGCAACGCGTACTTTTGCGTCATTGTGGGCATC
CGCATGTACCTGGACTCTAACAACAAGCGCAAAGCCCTGCATCGCTTCAT
GTGGAGCACGTATTTCCTGGTGCTCATCGCCATCTTCAAGTACCTGCTCT
GCCTGAAGCTATCCAGCAAGACGGGCCTCGAGTATTCGGAGGTCTTCTCG
CCGATCTTCGTTCTGTTGCAGCTCGTGGCTGTGCGCGCCTGCCAGTTGCC
CAACTCCATCTAAAAGCTTTCTAGACC

BS18194.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG33932-PA 447 CG33932-RA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
Rpp20-RB 1395 CG33931-RB 603..1051 16..464 2245 100 Plus
Rpp20-RA 1244 CG33931-RA 603..1051 16..464 2245 100 Plus
CG33932-RB 1395 CG33932-RB 603..1051 16..464 2245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19745106..19745554 16..464 2245 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:49:27 has no hits.

BS18194.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:21:30 Download gff for BS18194.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33932-PA 1..447 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:58:21 Download gff for BS18194.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpp20-RA 597..1051 9..464 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:13:11 Download gff for BS18194.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33932-RB 597..1051 9..464 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:13:11 Download gff for BS18194.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19745100..19745554 9..464 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:58:21 Download gff for BS18194.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19639133..19639587 9..464 99   Plus

BS18194.3prime Sequence

477 bp (477 high quality bases) assembled on 2007-06-06

> BS18194.3prime
ATGGTCTAGAAAGCTTTTAGATGGAGTTGGGCAACTGGCAGGCGCGCACA
GCCACGAGCTGCAACAGAACGAAGATCGGCGAGAAGACCTCCGAATACTC
GAGGCCCGTCTTGCTGGATAGCTTCAGGCAGAGCAGGTACTTGAAGATGG
CGATGAGCACCAGGAAATACGTGCTCCACATGAAGCGATGCAGGGCTTTG
CGCTTGTTGTTAGAGTCCAGGTACATGCGGATGCCCACAATGACGCAAAA
GTACGCGTTGCAGATGTCGATGAAGAACAGGGGGCTGAAGACGGTGAACC
AGTCGCCCATGGGCTCCGGGAGTATGCCACCGGGTCCGGCCCTGGCCTGC
AGATGGAGCTTGACGGTCAGCGTGATGGTGAACACCAGCAGGCCGCACAG
ATTGACCAGAATCTCGAACTCGGTGAGCCCCAGCCAGCGCACCAGCTCCG
AGAGTTTGAACATGTCGACTGATAACT

BS18194.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG33932-PA 447 CG33932-RA 1..447 463..17 2235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
Rpp20-RB 1395 CG33931-RB 603..1051 464..16 2245 100 Minus
Rpp20-RA 1244 CG33931-RA 603..1051 464..16 2245 100 Minus
CG33932-RB 1395 CG33932-RB 603..1051 464..16 2245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19745106..19745554 464..16 2245 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:35:14 has no hits.

BS18194.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:21:25 Download gff for BS18194.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33932-PA 1..447 17..463 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:04:28 Download gff for BS18194.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpp20-RA 597..1051 16..471 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:39 Download gff for BS18194.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33932-RB 597..1051 16..471 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:39 Download gff for BS18194.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19745103..19745554 16..469 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:04:28 Download gff for BS18194.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19639136..19639587 16..469 99   Minus

BS18194.complete Sequence

479 bp assembled on 2007-06-21

GenBank Submission: KX801028

> BS18194.complete
GAAGTTATCAGTCGACATGTTCAAACTCTCGGAGCTGGTGCGCTGGCTGG
GGCTCACCGAGTTCGAGATTCTGGTCAATCTGTGCGGCCTGCTGGTGTTC
ACCATCACGCTGACCGTCAAGCTCCATCTGCAGGCCAGGGCCGGACCCGG
TGGCATACTCCCGGAGCCCATGGGCGACTGGTTCACCGTCTTCAGCCCCC
TGTTCTTCATCGACATCTGCAACGCGTACTTTTGCGTCATTGTGGGCATC
CGCATGTACCTGGACTCTAACAACAAGCGCAAAGCCCTGCATCGCTTCAT
GTGGAGCACGTATTTCCTGGTGCTCATCGCCATCTTCAAGTACCTGCTCT
GCCTGAAGCTATCCAGCAAGACGGGCCTCGAGTATTCGGAGGTCTTCTCG
CCGATCTTCGTTCTGTTGCAGCTCGTGGCTGTGCGCGCCTGCCAGTTGCC
CAACTCCATCTAAAAGCTTTCTAGACCAT

BS18194.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG33932-RB 447 CG33932-PB 1..447 17..463 2235 100 Plus
CG33932-RA 447 CG33932-PA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
Rpp20-RB 1395 CG33931-RB 603..1051 16..464 2245 100 Plus
Rpp20-RA 1244 CG33931-RA 603..1051 16..464 2245 100 Plus
CG33932-RB 1395 CG33932-RB 603..1051 16..464 2245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19745106..19745554 16..464 2245 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:26:13 has no hits.

BS18194.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:57 Download gff for BS18194.complete
Subject Subject Range Query Range Percent Splice Strand
CG33932-RA 1..447 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:57:27 Download gff for BS18194.complete
Subject Subject Range Query Range Percent Splice Strand
Rpp20-RA 595..1049 9..464 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:41 Download gff for BS18194.complete
Subject Subject Range Query Range Percent Splice Strand
Rpp20-RA 609..1048 22..461 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:57 Download gff for BS18194.complete
Subject Subject Range Query Range Percent Splice Strand
Rpp20-RA 595..1049 9..464 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:26 Download gff for BS18194.complete
Subject Subject Range Query Range Percent Splice Strand
CG33932-RB 609..1048 22..461 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:26 Download gff for BS18194.complete
Subject Subject Range Query Range Percent Splice Strand
X 19745112..19745551 22..461 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:41 Download gff for BS18194.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19639145..19639584 22..461 100   Plus

BS18194.pep Sequence

Translation from 16 to 462

> BS18194.pep
MFKLSELVRWLGLTEFEILVNLCGLLVFTITLTVKLHLQARAGPGGILPE
PMGDWFTVFSPLFFIDICNAYFCVIVGIRMYLDSNNKRKALHRFMWSTYF
LVLIAIFKYLLCLKLSSKTGLEYSEVFSPIFVLLQLVAVRACQLPNSI*

BS18194.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG33932-PB 148 CG33932-PB 1..148 1..148 770 100 Plus
CG33932-PA 148 CG33932-PA 1..148 1..148 770 100 Plus