Clone Sequence Records
BS18194.5prime Sequence
477 bp (477 high quality bases) assembled on 2007-06-06
> BS18194.5prime
GAAGTTATCACTCGACATGTTCAAACTCTCGGAGCTGGTGCGCTGGCTGG
GGCTCACCGAGTTCGAGATTCTGGTCAATCTGTGCGGCCTGCTGGTGTTC
ACCATCACGCTGACCGTCAAGCTCCATCTGCAGGCCAGGGCCGGACCCGG
TGGCATACTCCCGGAGCCCATGGGCGACTGGTTCACCGTCTTCAGCCCCC
TGTTCTTCATCGACATCTGCAACGCGTACTTTTGCGTCATTGTGGGCATC
CGCATGTACCTGGACTCTAACAACAAGCGCAAAGCCCTGCATCGCTTCAT
GTGGAGCACGTATTTCCTGGTGCTCATCGCCATCTTCAAGTACCTGCTCT
GCCTGAAGCTATCCAGCAAGACGGGCCTCGAGTATTCGGAGGTCTTCTCG
CCGATCTTCGTTCTGTTGCAGCTCGTGGCTGTGCGCGCCTGCCAGTTGCC
CAACTCCATCTAAAAGCTTTCTAGACC
BS18194.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:21:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33932-PA | 447 | CG33932-RA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpp20-RB | 1395 | CG33931-RB | 603..1051 | 16..464 | 2245 | 100 | Plus |
Rpp20-RA | 1244 | CG33931-RA | 603..1051 | 16..464 | 2245 | 100 | Plus |
CG33932-RB | 1395 | CG33932-RB | 603..1051 | 16..464 | 2245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19745106..19745554 | 16..464 | 2245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:49:27 has no hits.
BS18194.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:21:30 Download gff for
BS18194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33932-PA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:58:21 Download gff for
BS18194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp20-RA | 597..1051 | 9..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:13:11 Download gff for
BS18194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33932-RB | 597..1051 | 9..464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:13:11 Download gff for
BS18194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19745100..19745554 | 9..464 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:58:21 Download gff for
BS18194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19639133..19639587 | 9..464 | 99 | | Plus |
BS18194.3prime Sequence
477 bp (477 high quality bases) assembled on 2007-06-06
> BS18194.3prime
ATGGTCTAGAAAGCTTTTAGATGGAGTTGGGCAACTGGCAGGCGCGCACA
GCCACGAGCTGCAACAGAACGAAGATCGGCGAGAAGACCTCCGAATACTC
GAGGCCCGTCTTGCTGGATAGCTTCAGGCAGAGCAGGTACTTGAAGATGG
CGATGAGCACCAGGAAATACGTGCTCCACATGAAGCGATGCAGGGCTTTG
CGCTTGTTGTTAGAGTCCAGGTACATGCGGATGCCCACAATGACGCAAAA
GTACGCGTTGCAGATGTCGATGAAGAACAGGGGGCTGAAGACGGTGAACC
AGTCGCCCATGGGCTCCGGGAGTATGCCACCGGGTCCGGCCCTGGCCTGC
AGATGGAGCTTGACGGTCAGCGTGATGGTGAACACCAGCAGGCCGCACAG
ATTGACCAGAATCTCGAACTCGGTGAGCCCCAGCCAGCGCACCAGCTCCG
AGAGTTTGAACATGTCGACTGATAACT
BS18194.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:21:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33932-PA | 447 | CG33932-RA | 1..447 | 463..17 | 2235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:35:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpp20-RB | 1395 | CG33931-RB | 603..1051 | 464..16 | 2245 | 100 | Minus |
Rpp20-RA | 1244 | CG33931-RA | 603..1051 | 464..16 | 2245 | 100 | Minus |
CG33932-RB | 1395 | CG33932-RB | 603..1051 | 464..16 | 2245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:35:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19745106..19745554 | 464..16 | 2245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:35:14 has no hits.
BS18194.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:21:25 Download gff for
BS18194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33932-PA | 1..447 | 17..463 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:04:28 Download gff for
BS18194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp20-RA | 597..1051 | 16..471 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:39 Download gff for
BS18194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33932-RB | 597..1051 | 16..471 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:39 Download gff for
BS18194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19745103..19745554 | 16..469 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:04:28 Download gff for
BS18194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19639136..19639587 | 16..469 | 99 | | Minus |
BS18194.complete Sequence
479 bp assembled on 2007-06-21
GenBank Submission: KX801028
> BS18194.complete
GAAGTTATCAGTCGACATGTTCAAACTCTCGGAGCTGGTGCGCTGGCTGG
GGCTCACCGAGTTCGAGATTCTGGTCAATCTGTGCGGCCTGCTGGTGTTC
ACCATCACGCTGACCGTCAAGCTCCATCTGCAGGCCAGGGCCGGACCCGG
TGGCATACTCCCGGAGCCCATGGGCGACTGGTTCACCGTCTTCAGCCCCC
TGTTCTTCATCGACATCTGCAACGCGTACTTTTGCGTCATTGTGGGCATC
CGCATGTACCTGGACTCTAACAACAAGCGCAAAGCCCTGCATCGCTTCAT
GTGGAGCACGTATTTCCTGGTGCTCATCGCCATCTTCAAGTACCTGCTCT
GCCTGAAGCTATCCAGCAAGACGGGCCTCGAGTATTCGGAGGTCTTCTCG
CCGATCTTCGTTCTGTTGCAGCTCGTGGCTGTGCGCGCCTGCCAGTTGCC
CAACTCCATCTAAAAGCTTTCTAGACCAT
BS18194.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:26:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33932-RB | 447 | CG33932-PB | 1..447 | 17..463 | 2235 | 100 | Plus |
CG33932-RA | 447 | CG33932-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpp20-RB | 1395 | CG33931-RB | 603..1051 | 16..464 | 2245 | 100 | Plus |
Rpp20-RA | 1244 | CG33931-RA | 603..1051 | 16..464 | 2245 | 100 | Plus |
CG33932-RB | 1395 | CG33932-RB | 603..1051 | 16..464 | 2245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:26:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19745106..19745554 | 16..464 | 2245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:26:13 has no hits.
BS18194.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:57 Download gff for
BS18194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33932-RA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:57:27 Download gff for
BS18194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp20-RA | 595..1049 | 9..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:41 Download gff for
BS18194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp20-RA | 609..1048 | 22..461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:57 Download gff for
BS18194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp20-RA | 595..1049 | 9..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:26 Download gff for
BS18194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33932-RB | 609..1048 | 22..461 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:26 Download gff for
BS18194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19745112..19745551 | 22..461 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:41 Download gff for
BS18194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19639145..19639584 | 22..461 | 100 | | Plus |
BS18194.pep Sequence
Translation from 16 to 462
> BS18194.pep
MFKLSELVRWLGLTEFEILVNLCGLLVFTITLTVKLHLQARAGPGGILPE
PMGDWFTVFSPLFFIDICNAYFCVIVGIRMYLDSNNKRKALHRFMWSTYF
LVLIAIFKYLLCLKLSSKTGLEYSEVFSPIFVLLQLVAVRACQLPNSI*
BS18194.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33932-PB | 148 | CG33932-PB | 1..148 | 1..148 | 770 | 100 | Plus |
CG33932-PA | 148 | CG33932-PA | 1..148 | 1..148 | 770 | 100 | Plus |