BS18249.complete Sequence
1865 bp assembled on 2009-07-30
GenBank Submission: KX804810
> BS18249.complete
GAAGTTATCAGTCGACATGCCCGAGGTCCTCAGCGGCACGCCCACCAACA
GCCACAACAAAGCCAACATCGCCATGATGAACAACGTCCGGCTATCCAAT
ATATCGCCGACTCTCTCGATGAACGGCAGCTCCAACGAGGCTTCTAACTT
GCATCCGTTGTCCATGTACGGAGGATCCATAAGTCCGCAGTCAAATGACA
GCGGCATGTCCGACAGTCTGGGCAAATATGTCCCGGGAAGCGGCTATGGA
GATGGAATGATGGCCCAGTCGCCCTCACAGGGTGGCAATGGACCGCAGTC
GGCGTTGACCGCCGCCCAGAAAGAGCTCTTCTCGCAGCGAAAGCAACGCG
AATTCACCCCGGACAACAAGAAGGACGAGAGCTACTGGGATCGCCGGAGA
AGGAACAACGAGGCGGCCAAGCGGAGTCGAGAGAAGAGGCGCTACAATGA
CATGGTTCTGGAGCAGCGCGTCATCGAGCTGACCAAAGAGAACCATGTGC
TGAAGGCCCAGCTGGACGCCATACGCGACAAGTTCAACATCTCCGGCGAG
AATCTGGTGAGCGTGGAGAAGATCCTCGCCTCGCTGCCCACCAGCGAACA
GGTGCTGAGTAACACAAAGCGCGCCAAGATGAGCGGCAGTGGTGGCTCCT
CCTCGGGCTCCTCGCCCTCGGGCAGTGGATCGGGCGAGGGATCGCCTCAA
GGTGGCCACAATGGCTATCCGGTGGGTCCACCACTATCTCCACTGATCTA
CGGACCCAATGGCAATGCCCGGCCAGAGGCCACGGTTAAGAGTGTCCACC
ACATACATCATGCGGGTGTTGCGCCGCCACCAACGCACCTACAACAGTTG
GTTGTGCCCCAGTCCCAGACACAGCATCTCTACCAGCCACAGCCGCAGCA
GCATCAGCCGCATCAGCAGCAGCAGATTTCCCAGCCACCGCAGCAACAAC
AGCAGCAGCAGGAGCCAAGTCCCAGTGCCGGCTCCAGTTCGCCAGTCATC
TCCGATCCGCACAACCGCCCGCCAAGCACCACCATTGCCAATCTCCAGGT
GCAACTGCAGCAGGCACTAAACCGCAATGTCAGGCCCGAGGATCTGGACA
GCTTGCGCAAGGTGGTGGCCGCCGGCGCTCTATACAATGCGGCAGCCGTG
GTGGGAGCACCACCACCGCCACCATCTGCTGGTCTCTACGTGCCCGCTCC
CAGCGCCTATAAGGATCACCTGGAAGCGGCTGCAGCCTGGAGCCACAATG
TCGAGGCTGCTGTGAGCAGCAGTGCTGTGGATGCGGTCAGTAGCTCATCG
GTGTCCGGCAGTGCGGCCAGTGTGCTGAATCTATCGCGTCGGGCCTGCTC
ACCCAGCTACGAGCACATGCTCTCCTCCACCACCTCCTCCACTCTTTCCT
CGGCCTCCTCATCGGGAGCTGTTTCCGGCGATGATGAGCAGGAGCACGAA
CCAGCGCACATGGCTCCACTGCAGCTGCAGCGAAGCAGTCCGCAGCAGGG
CAGCGATGCCAACAACTGTCTGCCCCTCAAGCTGCGCCACAAGTCCCATC
TCGGCGACAAGGATGCGGCGGCCACGGCGCTACTCTCACTGCAGCACATC
AAGCAGGAGCCCAACTGCAGTCGGGCATCGCCGCCGGCTTGGAACGATGG
CGGCGACAATTCCAGCGACGAAAGGGACTCCGGCATCTCCATCGCCAGTG
CGGAGTGGACGGCGCAGCTGCAGAGGAAGCTACTGGCGCCCAAGGAGGCC
AATGTGGTAACCAGTGCCGAGCGCGATCAAATGCTCAAGTCGCAGCTGGA
GCGCCTAGAGTCCGAGGTGGCCAGCATCAAGATGATCTTGGCGGAGTAAA
AGCTTTCTAGACCAT
BS18249.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vri-RF | 2190 | CG14029-PF | 358..2190 | 17..1849 | 9165 | 100 | Plus |
| vri-RE | 1833 | CG14029-PE | 1..1833 | 17..1849 | 9165 | 100 | Plus |
| vri-RD | 2190 | CG14029-PD | 358..2190 | 17..1849 | 9165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vri-RF | 4068 | CG14029-RF | 733..2565 | 17..1849 | 9165 | 100 | Plus |
| vri-RE | 3890 | CG14029-RE | 782..2614 | 17..1849 | 9165 | 100 | Plus |
| vri-RD | 3455 | CG14029-RD | 733..2565 | 17..1849 | 9165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5308021..5309720 | 150..1849 | 8500 | 100 | Plus |
| 2L | 23513712 | 2L | 5307780..5307912 | 17..149 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:26:17 has no hits.
BS18249.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-30 12:09:10 Download gff for
BS18249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vri-RD | 661..2491 | 17..1847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:32 Download gff for
BS18249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vri-RA | 675..2505 | 17..1847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:34 Download gff for
BS18249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vri-RD | 733..2563 | 17..1847 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:34 Download gff for
BS18249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5307780..5307912 | 17..149 | 100 | -> | Plus |
| 2L | 5308021..5309718 | 150..1847 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:32 Download gff for
BS18249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5307780..5307912 | 17..149 | 100 | -> | Plus |
| arm_2L | 5308021..5309718 | 150..1847 | 100 | | Plus |
BS18249.pep Sequence
Translation from 16 to 1848
> BS18249.pep
MPEVLSGTPTNSHNKANIAMMNNVRLSNISPTLSMNGSSNEASNLHPLSM
YGGSISPQSNDSGMSDSLGKYVPGSGYGDGMMAQSPSQGGNGPQSALTAA
QKELFSQRKQREFTPDNKKDESYWDRRRRNNEAAKRSREKRRYNDMVLEQ
RVIELTKENHVLKAQLDAIRDKFNISGENLVSVEKILASLPTSEQVLSNT
KRAKMSGSGGSSSGSSPSGSGSGEGSPQGGHNGYPVGPPLSPLIYGPNGN
ARPEATVKSVHHIHHAGVAPPPTHLQQLVVPQSQTQHLYQPQPQQHQPHQ
QQQISQPPQQQQQQQEPSPSAGSSSPVISDPHNRPPSTTIANLQVQLQQA
LNRNVRPEDLDSLRKVVAAGALYNAAAVVGAPPPPPSAGLYVPAPSAYKD
HLEAAAAWSHNVEAAVSSSAVDAVSSSSVSGSAASVLNLSRRACSPSYEH
MLSSTTSSTLSSASSSGAVSGDDEQEHEPAHMAPLQLQRSSPQQGSDANN
CLPLKLRHKSHLGDKDAAATALLSLQHIKQEPNCSRASPPAWNDGGDNSS
DERDSGISIASAEWTAQLQRKLLAPKEANVVTSAERDQMLKSQLERLESE
VASIKMILAE*
BS18249.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:09:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vri-PF | 729 | CG14029-PF | 120..729 | 1..610 | 3125 | 100 | Plus |
| vri-PE | 610 | CG14029-PE | 1..610 | 1..610 | 3125 | 100 | Plus |
| vri-PD | 729 | CG14029-PD | 120..729 | 1..610 | 3125 | 100 | Plus |
| vri-PA | 729 | CG14029-PA | 120..729 | 1..610 | 3125 | 100 | Plus |
| vri-PC | 610 | CG14029-PC | 1..610 | 1..610 | 3125 | 100 | Plus |
