Clone BS18503 Report

Search the DGRC for BS18503

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:185
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptFer1-RA
Protein status:BS18503.pep: full length peptide match
Sequenced Size:788

Clone Sequence Records

BS18503.complete Sequence

788 bp assembled on 2012-04-25

GenBank Submission: KX806445

> BS18503.complete
GAAGTTATCAGTCGACATGTTTTCCATGGACAATTTCGACTTGGAGGCCA
CGATGGCGCGCCACTTCTTCGAGGGATCGCAGGCCACCAACGCCTCCACC
TCCAGCTCCGACTATTTTTTTGGGGACGAGCACAGCTCGGAGAGCGATGA
CGAGGACGATGCCTATAGCAGTGGCTTCAACAGCGACCAGGAGAACACCG
AGAAGACCCGGCGGAGCCACAAGCCCCGGCGCTTGAAGTGCGCCTCCCAA
ATGGCCCAGCAGCGGCAGGCGGCCAATCTCCGCGAGCGCCGCCGGATGCA
GAGCATCAACGAGGCGTTCGAGGGTCTGCGCACCCACATTCCCACGCTGC
CCTACGAGAAGCGACTAAGCAAGGTGGACACACTCAAGCTGGCCATAAGC
TACATAACCTTCCTCAGCGAGATGGTCAAGAAGGACAAGAACGGCAACGA
GCCGGGCCTAAGTCTGCAGCGTAACTACCAAAAGGAGCCGCCCAAGAAAA
TTATCCTCAAGGATCGCACTGGCGGCGTGGCGCACTCGTTGTCCTGGTAC
CGCAAGGGTGACCGATATCCGGGCAGTAAGCTCTACGCCAGGACCTGGAC
ACCGGAGGATCCACGGGGACCCCACTCGCAGCCCCTGCCGCTGTACAACA
ACAGCAACTCGAATCAGAATCAAAACAGCAACCAGAGCAGCGACGATTTC
AGCGGAAGTGGTGCGGATATGTCGGATCCTGGAGCTGCGGCCAGTATTTT
CAGCAGCGGCAGTGGCATGTGAAAGCTTTCTAGACCAT

BS18503.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
Fer1-RA 756 CG33323-PA 1..756 17..772 3780 100 Plus
Fer1-RB 771 CG33323-PB 1..771 17..772 3595 98.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
Fer1-RA 1437 CG33323-RA 452..1208 16..772 3785 100 Plus
Fer1-RB 1452 CG33323-RB 452..1223 16..772 3600 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7141490..7141743 519..772 1270 100 Plus
3R 32079331 3R 7137165..7137356 16..207 960 100 Plus
3R 32079331 3R 7137421..7137588 208..375 840 100 Plus
3R 32079331 3R 7137848..7137994 372..518 735 100 Plus
Blast to na_te.dros performed 2014-11-28 12:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6853 646..708 134 71.9 Plus

BS18503.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:15 Download gff for BS18503.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1-RA 460..1207 24..771 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:37 Download gff for BS18503.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1-RA 458..1205 24..771 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:08 Download gff for BS18503.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1-RA 460..1207 24..771 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:52 Download gff for BS18503.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1-RA 460..1207 24..771 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:52 Download gff for BS18503.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7141490..7141742 519..771 100   Plus
3R 7137173..7137356 24..207 100 -> Plus
3R 7137421..7137586 208..373 100 -> Plus
3R 7137850..7137994 374..518 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:08 Download gff for BS18503.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2967212..2967464 519..771 100   Plus
arm_3R 2962895..2963078 24..207 100 -> Plus
arm_3R 2963143..2963308 208..373 100 -> Plus
arm_3R 2963572..2963716 374..518 100 -> Plus

BS18503.pep Sequence

Translation from 16 to 771

> BS18503.pep
MFSMDNFDLEATMARHFFEGSQATNASTSSSDYFFGDEHSSESDDEDDAY
SSGFNSDQENTEKTRRSHKPRRLKCASQMAQQRQAANLRERRRMQSINEA
FEGLRTHIPTLPYEKRLSKVDTLKLAISYITFLSEMVKKDKNGNEPGLSL
QRNYQKEPPKKIILKDRTGGVAHSLSWYRKGDRYPGSKLYARTWTPEDPR
GPHSQPLPLYNNSNSNQNQNSNQSSDDFSGSGADMSDPGAAASIFSSGSG
M*

BS18503.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
Fer1-PA 251 CG33323-PA 1..251 1..251 1316 100 Plus
Fer1-PB 256 CG33323-PB 1..256 1..251 1300 98 Plus
Fer2-PE 273 CG5952-PE 142..207 76..140 211 63.6 Plus
Fer2-PB 274 CG5952-PB 142..207 76..140 211 63.6 Plus
Fer2-PC 279 CG5952-PC 142..212 76..140 206 59.2 Plus