Clone BS18513 Report

Search the DGRC for BS18513

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:185
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptMax-RA
Protein status:BS18513.pep: full length peptide match
Sequenced Size:518

Clone Sequence Records

BS18513.complete Sequence

518 bp assembled on 2012-04-25

GenBank Submission: KX801385

> BS18513.complete
GAAGTTATCAGTCGACATGAGTATGAGCGACGACGACCGCGACATAGACA
TCGAAAGTGACGAGGACGGGGACTCGGACACTGGCTTGGGATCCTCGCGA
CACACAAACACCGCCAATTTCACCCAGGCCGAAAAGCGGGCGCACCACAA
CGCTTTGGAGCGAAGGCGGCGCGATCACATCAAGGAGAGCTTCACCAACC
TGCGTGAGGCGGTGCCCACACTCAAGGGCGAAAAGGCGAGTCGAGCTCAA
ATCCTGAAAAAGACCACCGAATGCATACAGACGATGAGGCGGAAGATCAG
TGAAAACCAGAAAGACATCGAAGAGATCAAGAGGCAAAACAACATAATAG
CTAAGCAGATACAAGCACTGGAGAGTTCAAATGGGGATCAGTTCAGCGAA
TTTCTCAGCGACGAGGAAGTGGGCAGCGAGGAGGCCGACGACGAAGACCT
CGACCAGGACTTCAGTAGACGCAATAAAAAGATGAAGACCTTCCACGCAT
AGAAGCTTTCTAGACCAT

BS18513.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
Max-RD 486 CG9648-PD 1..486 17..502 2430 100 Plus
Max-RC 486 CG9648-PC 1..486 17..502 2430 100 Plus
Max-RA 486 CG9648-PA 1..486 17..502 2430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
Max-RD 1289 CG9648-RD 158..645 15..502 2440 100 Plus
Max-RC 822 CG9648-RC 158..645 15..502 2440 100 Plus
Max-RA 995 CG9648-RA 158..645 15..502 2440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19262876..19263018 502..360 715 100 Minus
3L 28110227 3L 19263084..19263209 359..234 630 100 Minus
3L 28110227 3L 19263416..19263526 236..126 555 100 Minus
3L 28110227 3L 19263839..19263905 128..62 335 100 Minus
3L 28110227 3L 19263980..19264027 62..15 240 100 Minus
Blast to na_te.dros performed 2014-11-28 12:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy4 6852 gypsy4 GYPSY4 6852bp 508..608 271..368 119 60.4 Plus

BS18513.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:12 Download gff for BS18513.complete
Subject Subject Range Query Range Percent Splice Strand
Max-RA 167..652 17..502 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:31 Download gff for BS18513.complete
Subject Subject Range Query Range Percent Splice Strand
Max-RA 167..652 17..502 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:31 Download gff for BS18513.complete
Subject Subject Range Query Range Percent Splice Strand
Max-RA 160..645 17..502 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:04 Download gff for BS18513.complete
Subject Subject Range Query Range Percent Splice Strand
Max-RA 160..645 17..502 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:04 Download gff for BS18513.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19263084..19263207 236..359 100 <- Minus
3L 19263417..19263524 128..235 100 <- Minus
3L 19263840..19263905 62..127 100 <- Minus
3L 19263981..19264025 17..61 100   Minus
3L 19262876..19263018 360..502 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:31 Download gff for BS18513.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19255976..19256118 360..502 100 <- Minus
arm_3L 19256184..19256307 236..359 100 <- Minus
arm_3L 19256517..19256624 128..235 100 <- Minus
arm_3L 19256940..19257005 62..127 100 <- Minus
arm_3L 19257081..19257125 17..61 100   Minus

BS18513.pep Sequence

Translation from 16 to 501

> BS18513.pep
MSMSDDDRDIDIESDEDGDSDTGLGSSRHTNTANFTQAEKRAHHNALERR
RRDHIKESFTNLREAVPTLKGEKASRAQILKKTTECIQTMRRKISENQKD
IEEIKRQNNIIAKQIQALESSNGDQFSEFLSDEEVGSEEADDEDLDQDFS
RRNKKMKTFHA*

BS18513.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
Max-PD 161 CG9648-PD 1..161 1..161 818 100 Plus
Max-PC 161 CG9648-PC 1..161 1..161 818 100 Plus
Max-PA 161 CG9648-PA 1..161 1..161 818 100 Plus