BS18926.complete Sequence
1205 bp assembled on 2009-07-17
GenBank Submission: KX805096
> BS18926.complete
GAAGTTATCAGTCGACATGGATGCCACACAGCTAACGGAACTAATGGGCA
GCCATGATTTTATGCAATTACAACATCAATTGCATCACAATAACAACAAT
TACAACACAGACGGACACAATGGACTGTCTTCAGAATCAGCGGAGGGAAG
TTCTCGACCCGTCCGTCGTGCCACCAGACGAACTTCACAGCTAAGCAATA
ATACTTATGACCTGGAGATGACAGATTCCAGTTCGCAAAGCGATGACACA
AGCGGCGGAGGCGGCAGCAGCAACGGGGGTGGTAGCACCACAAACACTGG
ACATCCGTCCGGCTGCTCTCTGGGCGGTCAGGGGCCATCAGGCCGCGGAC
GGGTCCAGCAAGCTAGCTCAGGAGCCTGTCCATCTACCATTGCCCCGAAC
AGTACCAGCTCCAACTCCTCCAATGCAAACGGCAACGCCAGTAGGCGGCG
GAAAGGCGCCCTGAACGCTAAGGAGCGGAATATGCGTCGCTTGGAGTCAA
ATGAACGAGAGCGAATGCGGATGCACAGCCTAAACGATGCATTTCAATCG
CTTCGAGAGGTCATACCGCACGTGGAGATGGAGCGACGGCTGTCCAAGAT
TGAAACACTCACACTGGCCAAAAACTATATCATAAATCTGACGCACATAA
TACTCTCCAAGCGCAACGAGGAGGCGGCGGCCTTGGAGCTGAACTCGGGG
GCCGTTGGTGGGGTGCTGCTCTCAAATCTTTCCTCCGAAAGTGGAGGACC
GGTAGCGAGTGGTATTCCTGCAAATTCCAATGCCGCGACGATATGCTTTG
AGGATACCCTGGCCAGCGGAGGTGCCTTTGACTGCGCCATTTTGGCAGCC
ACCGACGGCAGCCTACTGAACGCTGCCACAGTGACAACCAGCCCCGCGAT
GCAGAGCATCCAATCACAAGCCATACACTTGCAGACACCGATGGAGCAGC
AGCAACAGCAAGCCAGCCATCTTCCGCACCATCAGCAGGCGATGCATGGC
CATGGCCATCTAGGGGCCAGCATTCAATCGCAGCAGCAGCCTAGCCTTGT
ACTAAATGGCACTACATCGGTGGGCCTGGGAATTGGAATAGGGGTTGGTG
TCGGAGTGGGAGTTGGGGTGTGCAACAATGCGCCAAGCTTTGCTGATATC
AATGATAATTTCGACGAGCCCTTTCGAGAGTTTCTGTAAAAGCTTTCTAG
ACCAT
BS18926.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dimm-RB | 1173 | CG8667-PB | 1..1173 | 17..1189 | 5865 | 100 | Plus |
| dimm-RA | 1173 | CG8667-PA | 1..1173 | 17..1189 | 5865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dimm-RB | 3292 | CG8667-RB | 311..1484 | 16..1189 | 5870 | 100 | Plus |
| dimm-RA | 1411 | CG8667-RA | 43..1216 | 16..1189 | 5870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:32:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21339346..21340347 | 188..1189 | 5010 | 100 | Plus |
| 2L | 23513712 | 2L | 21339110..21339284 | 16..190 | 875 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2509 | 845..996 | 149 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6899 | 856..1040 | 139 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2448 | 945..1068 | 119 | 59.1 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9152..9248 | 915..1008 | 116 | 63.3 | Plus |
| I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 597..624 | 1121..1094 | 113 | 89.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2466 | 943..1040 | 111 | 62.4 | Plus |
BS18926.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-27 12:13:24 Download gff for
BS18926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dimm-RA | 1..1171 | 17..1187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:27 Download gff for
BS18926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dimm-RA | 44..1214 | 17..1187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:40 Download gff for
BS18926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dimm-RA | 44..1214 | 17..1187 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:40 Download gff for
BS18926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21339111..21339284 | 17..190 | 100 | -> | Plus |
| 2L | 21339349..21340345 | 191..1187 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:27 Download gff for
BS18926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21339111..21339284 | 17..190 | 100 | -> | Plus |
| arm_2L | 21339349..21340345 | 191..1187 | 100 | | Plus |
BS18926.pep Sequence
Translation from 16 to 1188
> BS18926.pep
MDATQLTELMGSHDFMQLQHQLHHNNNNYNTDGHNGLSSESAEGSSRPVR
RATRRTSQLSNNTYDLEMTDSSSQSDDTSGGGGSSNGGGSTTNTGHPSGC
SLGGQGPSGRGRVQQASSGACPSTIAPNSTSSNSSNANGNASRRRKGALN
AKERNMRRLESNERERMRMHSLNDAFQSLREVIPHVEMERRLSKIETLTL
AKNYIINLTHIILSKRNEEAAALELNSGAVGGVLLSNLSSESGGPVASGI
PANSNAATICFEDTLASGGAFDCAILAATDGSLLNAATVTTSPAMQSIQS
QAIHLQTPMEQQQQQASHLPHHQQAMHGHGHLGASIQSQQQPSLVLNGTT
SVGLGIGIGVGVGVGVGVCNNAPSFADINDNFDEPFREFL*
BS18926.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:50:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dimm-PB | 390 | CG8667-PB | 1..390 | 1..390 | 1999 | 100 | Plus |
| dimm-PA | 390 | CG8667-PA | 1..390 | 1..390 | 1999 | 100 | Plus |
| amos-PA | 198 | CG10393-PA | 111..194 | 129..212 | 173 | 44 | Plus |
| Oli-PC | 232 | CG5545-PC | 102..180 | 123..206 | 158 | 45.3 | Plus |
| Oli-PB | 232 | CG5545-PB | 102..180 | 123..206 | 158 | 45.3 | Plus |
