BS19101.complete Sequence
1253 bp assembled on 2009-07-17
GenBank Submission: KX803802
> BS19101.complete
GAAGTTATCAGTCGACATGTTTGCCGAGGAGGATCTGATTGAGCTTGAGG
GCAAGAAGACGGATCCCTTCAGTCCGGCAATGGACGGGATGAACAACGAC
AACCTAGACGACGACTTTCTACAATTGAATGACCTGCTTAACGAGGAGGA
GACTTTCGACATGTCATCGATGTCCGGCGTCGGTATCGACATCAACCAGG
AGCAGGAACTGGACTTCATCAACATATTCCACAACTCGCAGCCAACGGCC
ATGCTCACCAGCTCAGAGGACCCCTATCTCGCCACCTACTCTCAGGCCAC
ATCCACATCCAGCACCACCAAATTCATCACGGAGGAGCCCCTGCTCGCCG
ACATGACCAGCTTCGACATCAGCTATACCAGCAGCCAGGAGCTCGGCTTC
GGCCTTGTGGAGGACGTCAGCGGCAGTTTTGCCAGCAGTTGCAGTGACGT
CGCCGCGGCCATCCCAGCCCCCATCCAACACCCCATCATTACCAACATCA
AGCGTTCTGCTCCGGCCCCGGTCGAGTCGCAGCCCACCAAGCGCAGCCGA
CTGATGCTCCAGATCAAAACCGAGCTAGCTCCAGCATTCAGTCCGACCAC
ACCGGAGATTATCAACCAGCTCCTGAATGATGATCGGTTCGAGGCTCCCA
CCACAAGTACCAGTACCAGCACCAGCAACACTTCCATCAGCAGCAGCACC
CATGCAGACATCGTAGAGGATCTACGCAGTGCCGAAGAGGAGACTACCAC
CGACTTCTCGGCGCCGAACACACCACACAGCAACTACTCAGCCAGCTCCA
GCTGTGCGGCGCCCACCTGCCAGACCGGCTATGGTGGCTTCCTCACTGCT
CCCACCTCGCCCGCCTATTCAACAGCCAGTACGTCCGTGTTCAGCCCTTC
GCCAGCCAGCGGAATCAGCGGCAAGCGGAAGCGCGGTCGCCCTGCCAAGG
ATCATGCCGACGGTCCCGATCCCGTGCTCATGTCAAGCATGAAAAGCGAG
GAGGAGAGGAAGGCCTACCAGGACAGACTCAAGAACAACGAAGCGAGCCG
CGTATCGCGCCGGAAGACGAAGGTGCGCGAAGAGGAGGAGAAGCGCGCCG
AGGACACGCTATTGGCCGAGAATCTGCGACTGCGTGCCCGGGCCGACGAA
GTGGCCTCCCGGGAACGGAAGTTCAAGAAGTACTTGATGGAGCGCCAGCG
GCAGAAGAGCACTTACGTTAAGCAGGAGCAGGACTGAAAGCTTTCTAGAC
CAT
BS19101.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Xrp1-RG | 2007 | CG17836-PG | 785..2007 | 15..1237 | 6100 | 99.9 | Plus |
| Xrp1-RF | 2007 | CG17836-PF | 785..2007 | 15..1237 | 6100 | 99.9 | Plus |
| Xrp1-RA | 2007 | CG17836-PA | 785..2007 | 15..1237 | 6100 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Xrp1-RG | 3167 | CG17836-RG | 1460..2682 | 15..1237 | 6100 | 99.9 | Plus |
| Xrp1-RF | 3196 | CG17836-RF | 1629..2851 | 15..1237 | 6100 | 99.9 | Plus |
| Xrp1-RE | 2030 | CG17836-RE | 463..1685 | 15..1237 | 6100 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18925174..18925796 | 15..637 | 3115 | 100 | Plus |
| 3R | 32079331 | 3R | 18925904..18926504 | 637..1237 | 2990 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-27 14:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1097..1160 | 649..712 | 131 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2423 | 649..702 | 126 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2367 | 649..700 | 125 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6767 | 653..700 | 123 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6938 | 649..820 | 122 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2376 | 649..712 | 121 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2358 | 649..700 | 116 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2361 | 649..700 | 116 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2856 | 649..700 | 116 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6788 | 649..700 | 116 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6809 | 649..700 | 116 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1571 | 648..702 | 113 | 67.3 | Plus |
BS19101.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-27 12:13:23 Download gff for
BS19101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17836-RC | 565..1778 | 23..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:40 Download gff for
BS19101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xrp1-RE | 471..1684 | 23..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:00 Download gff for
BS19101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xrp1-RE | 471..1684 | 23..1236 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:00 Download gff for
BS19101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18925182..18925796 | 23..637 | 100 | -> | Plus |
| 3R | 18925905..18926503 | 638..1236 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:40 Download gff for
BS19101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14750904..14751518 | 23..637 | 100 | -> | Plus |
| arm_3R | 14751627..14752225 | 638..1236 | 99 | | Plus |
BS19101.pep Sequence
Translation from 16 to 1236
> BS19101.pep
MFAEEDLIELEGKKTDPFSPAMDGMNNDNLDDDFLQLNDLLNEEETFDMS
SMSGVGIDINQEQELDFINIFHNSQPTAMLTSSEDPYLATYSQATSTSST
TKFITEEPLLADMTSFDISYTSSQELGFGLVEDVSGSFASSCSDVAAAIP
APIQHPIITNIKRSAPAPVESQPTKRSRLMLQIKTELAPAFSPTTPEIIN
QLLNDDRFEAPTTSTSTSTSNTSISSSTHADIVEDLRSAEEETTTDFSAP
NTPHSNYSASSSCAAPTCQTGYGGFLTAPTSPAYSTASTSVFSPSPASGI
SGKRKRGRPAKDHADGPDPVLMSSMKSEEERKAYQDRLKNNEASRVSRRK
TKVREEEEKRAEDTLLAENLRLRARADEVASRERKFKKYLMERQRQKSTY
VKQEQD*
BS19101.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:50:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Xrp1-PE | 406 | CG17836-PE | 1..406 | 1..406 | 2053 | 100 | Plus |
| Xrp1-PD | 406 | CG17836-PD | 1..406 | 1..406 | 2053 | 100 | Plus |
| Xrp1-PC | 406 | CG17836-PC | 1..406 | 1..406 | 2053 | 100 | Plus |
| Xrp1-PG | 668 | CG17836-PG | 263..668 | 1..406 | 2053 | 100 | Plus |
| Xrp1-PF | 668 | CG17836-PF | 263..668 | 1..406 | 2053 | 100 | Plus |
