BS19403.complete Sequence
2183 bp assembled on 2009-10-06
GenBank Submission: KX805022
> BS19403.complete
GAAGTTATCAGTCGACATGGCAGCACCAGAGACGGGCAACACGGGCTCCA
CAGGATCCGCTGGCTCGACAGGATCGGGATCGGGATCGGGATCGGGAAGT
GGGAGCTCCTCAGATCCAGCGAATGGACGGGAGGCCCGTAACCTTGCCGA
AAAACAGCGACGGGATAAGCTTAATGCCAGCATCCAGGAGCTGGCCACCA
TGGTACCACATGCAGCCGAATCCTCCCGTCGCCTGGACAAAACCGCCGTC
CTTAGATTCGCCACCCATGGCCTGAGACTTCAGTATGTCTTTGGCAAGTC
CGCTTCCAGACGTCGCAAGAAAACCGGCCTCAAGGGAACGGGTATGTCTG
CCTCACCTGTCGGAGATCTACCCAATCCCAGTCTGCATCTAACGGACACT
CTAATGCAACTGCTGGACTGCTGCTTCCTCACCCTAACCTGCAGTGGCCA
AATCGTTTTGGTATCCACCAGCGTGGAGCAGCTATTGGGTCACTGTCAGT
CCGATTTGTATGGCCAGAATCTACTGCAGATCACGCATCCCGATGATCAG
GATCTGTTAAGACAGCAGCTAATACCCAGGGATATAGAGACCCTGTTCTA
TCAGCATCAGCACCACCAGCAGCAGGGGCACAATCCCCAGCAGCACTCCA
CTTCCACGTCGGCCTCAACTTCGGGCAGTGATCTGGAGGAGGAGGAAATG
GAGACGGAGGAACACCGTCTGGGTCGGCAGCAGGGAGAGGCGGACGATGA
CGAGGATCACCCGTACAACCGACGAACACCCAGCCCGCGGAGAATGGCCC
ATTTGGCGACCATTGATGACCGACTACGCATGGATCGGCGCTGCTTTACC
GTCCGCTTGGCTAGGGCTTCCACGCGAGCGGAGGCCACGCGTCATTACGA
GCGGGTTAAGATCGATGGCTGCTTTCGTCGCAGTGACTCCTCCTTAACCG
GAGGTGCCGCTGCCAACTATCCGATTGTCTCCCAGCTGATACGACGCTCG
AGAAACAACAATATGCTGGCTGCTGCTGCAGCAGTGGCAGCAGAAGCGGC
GACGGTGCCGCCCCAGCACGATGCCATTGCCCAGGCGGCGCTGCACGGGA
TTAGCGGCAATGATATTGTCCTGGTGGCCATGGCCAGGGTGCTGCGAGAG
GAACGGCCGCCTGAGGAGACGGAGGGTACAGTGGGCTTGACCATTTACAG
ACAGCCAGAACCCTATCAGTTGGAGTACCATACGAGGCATCTAATCGACG
GCAGCATCATCGACTGTGATCAAAGGATTGGTCTGGTGGCGGGATATATG
AAGGATGAGGTGCGCAACCTTAGTCCCTTCTGTTTCATGCACCTGGACGA
CGTTCGCTGGGTGATTGTGGCCCTTCGACAAATGTACGATTGCAACAGTG
ACTACGGCGAGAGCTGCTACCGTCTGCTGTCCCGCAACGGGCGCTTCATT
TACCTGCACACCAAGGGATTTCTGGAGGTCGACCGTGGCAGTAATAAGGT
GCATTCCTTTCTGTGCGTCAACACGCTGCTCGATGAGGAGGCGGGCCGGC
AAAAGGTGCAGGAGATGAAGGAGAAATTCTCGACAATCATCAAGGCGGAG
ATGCCCACGCAGAGCAGCAGTCCCGATTTGCCCGCCTCGCAGGCACCGCA
GCAACTTGAGAGAATTGTCCTCTATCTAATAGAGAACCTACAGAAGAGTG
TGGATTCAGCAGAGACGGTTGGCGGCCAGGGCATGGAAAGCCTAATGGAC
GATGGCTACAGTTCGCCAGCAAATACCTTAACTCTCGAGGAGTTAGCTCC
CTCGCCCACGCCCGCCTTGGCCTTGGTGCCGCCGGCTCCCTCATCGGTCA
AGAGCTCCATCTCCAAGTCGGTGAGTGTGGTCAATGTGACGGCGGCCAGA
AAGTTTCAGCAGGAGCATCAGAAGCAGCGTGAACGTGACCGTGAGCAGCT
TAAGGAGCGCACCAACTCCACGCAGGGCGTGATCCGGCAACTGAGCAGCT
GCCTAAGCGAGGCGGAAACGGCATCCTGTATCCTATCACCAGCCAGTAGC
TTGAGTGCCAGCGAAGCACCGGACACGCCCGATCCGCACAGCAACACATC
ACCGCCACCGTCGCTCCACACACGTCCCAGTGTCCTGCATCGAACCCTGA
CCAGCACGCTGCGATGAAAGCTTTCTAGACCAT
BS19403.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Met-RB | 2151 | CG1705-PB | 1..2151 | 17..2167 | 10755 | 100 | Plus |
| Met-RA | 2151 | CG1705-PA | 1..2151 | 17..2167 | 10755 | 100 | Plus |
| gce-RE | 2880 | CG42739-PE | 1639..1985 | 1247..1593 | 565 | 77.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:44:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Met-RB | 5088 | CG1705-RB | 745..2895 | 17..2167 | 10755 | 100 | Plus |
| Met-RA | 3756 | CG1705-RA | 745..2895 | 17..2167 | 10755 | 100 | Plus |
| gce-RE | 5120 | CG42739-RE | 2570..2916 | 1247..1593 | 565 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11616868..11618163 | 17..1312 | 6480 | 100 | Plus |
| X | 23542271 | X | 11618228..11619087 | 1308..2167 | 4300 | 100 | Plus |
| X | 23542271 | X | 15316215..15316350 | 1247..1382 | 320 | 82.4 | Plus |
| X | 23542271 | X | 15315368..15315554 | 392..578 | 275 | 76.5 | Plus |
| X | 23542271 | X | 15316469..15316631 | 1431..1593 | 245 | 76.7 | Plus |
Blast to na_te.dros performed 2014-11-27 08:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1540..1592 | 600..652 | 130 | 71.7 | Plus |
BS19403.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-20 10:49:49 Download gff for
BS19403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Met-RA | 1..2150 | 17..2166 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:10 Download gff for
BS19403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Met-RA | 745..2894 | 17..2166 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:35 Download gff for
BS19403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Met-RA | 745..2894 | 17..2166 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:35 Download gff for
BS19403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11616868..11618160 | 17..1309 | 100 | -> | Plus |
| X | 11618230..11619086 | 1310..2166 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:10 Download gff for
BS19403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11510901..11512193 | 17..1309 | 100 | -> | Plus |
| arm_X | 11512263..11513119 | 1310..2166 | 100 | | Plus |
BS19403.pep Sequence
Translation from 16 to 2166
> BS19403.pep
MAAPETGNTGSTGSAGSTGSGSGSGSGSGSSSDPANGREARNLAEKQRRD
KLNASIQELATMVPHAAESSRRLDKTAVLRFATHGLRLQYVFGKSASRRR
KKTGLKGTGMSASPVGDLPNPSLHLTDTLMQLLDCCFLTLTCSGQIVLVS
TSVEQLLGHCQSDLYGQNLLQITHPDDQDLLRQQLIPRDIETLFYQHQHH
QQQGHNPQQHSTSTSASTSGSDLEEEEMETEEHRLGRQQGEADDDEDHPY
NRRTPSPRRMAHLATIDDRLRMDRRCFTVRLARASTRAEATRHYERVKID
GCFRRSDSSLTGGAAANYPIVSQLIRRSRNNNMLAAAAAVAAEAATVPPQ
HDAIAQAALHGISGNDIVLVAMARVLREERPPEETEGTVGLTIYRQPEPY
QLEYHTRHLIDGSIIDCDQRIGLVAGYMKDEVRNLSPFCFMHLDDVRWVI
VALRQMYDCNSDYGESCYRLLSRNGRFIYLHTKGFLEVDRGSNKVHSFLC
VNTLLDEEAGRQKVQEMKEKFSTIIKAEMPTQSSSPDLPASQAPQQLERI
VLYLIENLQKSVDSAETVGGQGMESLMDDGYSSPANTLTLEELAPSPTPA
LALVPPAPSSVKSSISKSVSVVNVTAARKFQQEHQKQRERDREQLKERTN
STQGVIRQLSSCLSEAETASCILSPASSLSASEAPDTPDPHSNTSPPPSL
HTRPSVLHRTLTSTLR*
BS19403.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Met-PB | 716 | CG1705-PB | 1..716 | 1..716 | 3674 | 100 | Plus |
| Met-PA | 716 | CG1705-PA | 1..716 | 1..716 | 3674 | 100 | Plus |
| gce-PE | 959 | CG42739-PE | 277..798 | 36..634 | 1277 | 48 | Plus |
| gce-PD | 959 | CG42739-PD | 277..798 | 36..634 | 1277 | 48 | Plus |
| gce-PC | 959 | CG15032-PB | 277..798 | 36..634 | 1277 | 48 | Plus |
