BS19508.complete Sequence
1565 bp assembled on 2011-02-17
GenBank Submission: KX801741
> BS19508.complete
GAAGTTATCAGTCGACATGTTCTGGCTGGGATTCGGATTGCTGTTGCTCG
CGTTGTCCCTATACCTGCTATATGTCTTCGAGCGGCAGAGCAGGATCGAC
CGGCTCACCCACAAATGGCCAGCCCCACCGGCCCTGCCATTCATTGGCCA
TCTGCACATTCTAGCCAAATTGGTGGGACCGCATCCACTTCGACGAGCCA
CCGAAATGATCAACGAACATCTACACGATCATCGAGCAAAACTATGGATG
GGCACTAAGCTCTATCTCGTGGACTGCAATCCCAAGGATATACAGGCTCT
GTGCAGTGCCCAGCAGCTGCTGCAGAAGACCAACGACTATAGGGTCTTCG
AGAACTGGCTCTGCGAGGGTCTCTTCACCAGTGGATTCGAGAAGTGGTCC
CATCGCCGGAAGATCGTAATGCCGGCCTTCAACTACACCATGATCAAACA
GTTTGTTGCCGTCTTTGAGAAGCAGTCGAGGATTCTTTTGACGAATGTCG
CTAAATTTGCCGAGTCCGGGGATCAAATTGACTTTCTGCAACTGATCAGC
TGCTTCACTTTGGACACTATTTGTGAAACGGCCCTCGGAGTCTCTGTGGG
TTCGCAGTCGAGCGCCAAGTCGGAATACCTCGATGCTGTTAAATCAATCC
TTGTCATCATCGATAAGCGACTGAAGAACATCTTCTACCGCAACTCGTTT
ATTTTCAAACGCACATCGCATTATAAGCGAGAACAGGAGCTGATAAAAAC
GCTTCACGGATTCACAGAGGGCATTATACAGAAACGTATTGATGAAATCA
ACCAGGATGCAGAGAATCGCAACTACCAGAGCAGTGATGCGGAATTGGAC
GGAGTGAAGCGGACCCTATGCTTTCTGGACACCTTGCTACTGTCCAAGGG
TCCCGATGGCAAGCCTTTGACAGTCAAGGATATTCGCGAGGAAGTGGACA
CCATCATATTTGGGGGATTCGATCTCACGGCCACCACCCTCAACTTTTTC
ATGTATAACATGACTCTTCATCCGGAGCACCAGCAGCGATGTCGCGAGGA
GGTGTGGTCGGTATGCGGCAAGGACAAAAGTGAACCCATCTCCATAGAGC
AGGTGCGCCAACTGGAGTTCCTGGAGGCGTGTATAAAGGAAACTCTGCGG
ATGTATCCTTCAGGTCCACTCACTGCCAGAAAAGCCACAGCCAACTGCAC
AATCAATGACTTCTTCATACCGAAGGGTAGCGATGTAATCATTTCACCAA
TTTACATGGGACGTTGCAAGGACTTCTTTCCGGATCCGATGGTCTTCAAG
CCAGATCGCTGGGCAATTGGAGCGGAGCCCAAAATTGAGGCCACCACTTT
TATACCCTTTATGGCGGGGGCTCGGAGTTGCATGGGCCAGCGGTATGCGA
TGGTCATGCTCAAAATGGTGCTAGCTCACCTGCTGAGGAACTTCCTGTTC
GAGCCCCTTGGCGAGCGACAGGTGAAGTTGAAGCTCAACTTTGTGATCAC
GCTGCATACCGTTGAACCCTATCTATGTAGAGCTAAAAATCTAGATTGAA
AGCTTTCTAGACCAT
BS19508.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp312a1-RB | 1533 | CG5137-PB | 1..1533 | 17..1549 | 7665 | 100 | Plus |
| Cyp312a1-RA | 1533 | CG5137-PA | 1..1533 | 17..1549 | 7665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp312a1-RB | 3383 | CG5137-RB | 624..2156 | 17..1549 | 7665 | 100 | Plus |
| Cyp312a1-RA | 1628 | CG5137-RA | 30..1562 | 17..1549 | 7665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18131438..18132066 | 645..17 | 3145 | 100 | Minus |
| 3L | 28110227 | 3L | 18130571..18131130 | 1205..646 | 2800 | 100 | Minus |
| 3L | 28110227 | 3L | 18130167..18130510 | 1549..1206 | 1720 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:39:54 has no hits.
BS19508.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:19:11 Download gff for
BS19508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp312a1-RA | 173..1699 | 22..1548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:49 Download gff for
BS19508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp312a1-RA | 35..1561 | 22..1548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:43 Download gff for
BS19508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp312a1-RA | 35..1561 | 22..1548 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:43 Download gff for
BS19508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18130168..18130510 | 1206..1548 | 100 | <- | Minus |
| 3L | 18130571..18131130 | 646..1205 | 100 | <- | Minus |
| 3L | 18131438..18132061 | 22..645 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:49 Download gff for
BS19508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18123268..18123610 | 1206..1548 | 100 | <- | Minus |
| arm_3L | 18123671..18124230 | 646..1205 | 100 | <- | Minus |
| arm_3L | 18124538..18125161 | 22..645 | 100 | | Minus |
BS19508.pep Sequence
Translation from 16 to 1548
> BS19508.pep
MFWLGFGLLLLALSLYLLYVFERQSRIDRLTHKWPAPPALPFIGHLHILA
KLVGPHPLRRATEMINEHLHDHRAKLWMGTKLYLVDCNPKDIQALCSAQQ
LLQKTNDYRVFENWLCEGLFTSGFEKWSHRRKIVMPAFNYTMIKQFVAVF
EKQSRILLTNVAKFAESGDQIDFLQLISCFTLDTICETALGVSVGSQSSA
KSEYLDAVKSILVIIDKRLKNIFYRNSFIFKRTSHYKREQELIKTLHGFT
EGIIQKRIDEINQDAENRNYQSSDAELDGVKRTLCFLDTLLLSKGPDGKP
LTVKDIREEVDTIIFGGFDLTATTLNFFMYNMTLHPEHQQRCREEVWSVC
GKDKSEPISIEQVRQLEFLEACIKETLRMYPSGPLTARKATANCTINDFF
IPKGSDVIISPIYMGRCKDFFPDPMVFKPDRWAIGAEPKIEATTFIPFMA
GARSCMGQRYAMVMLKMVLAHLLRNFLFEPLGERQVKLKLNFVITLHTVE
PYLCRAKNLD*
BS19508.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp312a1-PB | 510 | CG5137-PB | 1..510 | 1..510 | 2685 | 100 | Plus |
| Cyp312a1-PA | 510 | CG5137-PA | 1..510 | 1..510 | 2685 | 100 | Plus |
| Cyp4d1-PA | 512 | CG3656-PA | 1..508 | 1..507 | 955 | 39.5 | Plus |
| Cyp4d1-PB | 503 | CG3656-PB | 3..499 | 9..507 | 912 | 38.1 | Plus |
| Cyp4c3-PA | 535 | CG1438-PA | 33..511 | 9..485 | 728 | 33.5 | Plus |
