BS19509.complete Sequence
569 bp assembled on 2011-01-27
GenBank Submission: KX801468
> BS19509.complete
GAAGTTATCAGTCGACATGGCGCAGAATATCAGCCCCGAGCAAAGTGGTG
GAGCAGGCGGCGGCGGCAGCAAGCACAGCGATGACTCCATGCCCGTGAAA
GACAATCACGCCGTGAGCAAAAGACTGCACAAGGAACTGATGAACCTGAT
GATGGCCAACGAGAGGGGCATCTCAGCGTTTCCGGACGGCGAGAACATCT
TCAAGTGGGTGGGCACCATAGCGGGTCCACGGAACACGGTGTATTCGGGG
CAAACGTATCGTTTGTCACTGGATTTTCCCAATTCCTATCCGTATGCAGC
ACCCGTGGTGAAGTTCCTGACGTCCTGCTTCCATCCCAATGTTGATCTGC
AGGGCGCCATCTGTTTGGACATACTGAAGGACAAATGGTCGGCCCTGTAC
GATGTGCGCACCATTCTGCTGTCCATACAATCCCTGCTGGGCGAACCGAA
CAACGAGAGTCCACTGAATGCGCAGGCCGCGATGATGTGGAATGACCAAA
AGGAGTACAAAAAATATCTAGACGCCTTCTACGAGAAGCACAAGGACACC
TAGAAGCTTTCTAGACCAT
BS19509.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vih-RA | 537 | CG10682-PA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vih-RA | 1464 | CG10682-RA | 254..792 | 16..554 | 2695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12504717..12505149 | 122..554 | 2165 | 100 | Plus |
| 3L | 28110227 | 3L | 12504545..12504652 | 16..123 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:47:10 has no hits.
BS19509.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:01 Download gff for
BS19509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vih-RA | 260..796 | 17..553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:27 Download gff for
BS19509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vih-RA | 255..791 | 17..553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:39 Download gff for
BS19509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vih-RA | 255..791 | 17..553 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:39 Download gff for
BS19509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12504546..12504652 | 17..123 | 100 | -> | Plus |
| 3L | 12504719..12505148 | 124..553 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:27 Download gff for
BS19509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12497646..12497752 | 17..123 | 100 | -> | Plus |
| arm_3L | 12497819..12498248 | 124..553 | 100 | | Plus |
BS19509.pep Sequence
Translation from 16 to 552
> BS19509.pep
MAQNISPEQSGGAGGGGSKHSDDSMPVKDNHAVSKRLHKELMNLMMANER
GISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKF
LTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPL
NAQAAMMWNDQKEYKKYLDAFYEKHKDT*
BS19509.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:50:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vih-PA | 178 | CG10682-PA | 1..178 | 1..178 | 949 | 100 | Plus |
| Ubc6-PC | 151 | CG2013-PC | 7..147 | 35..174 | 298 | 41.1 | Plus |
| Ubc6-PA | 151 | CG2013-PA | 7..147 | 35..174 | 298 | 41.1 | Plus |
| ben-PE | 151 | CG18319-PE | 3..129 | 32..158 | 292 | 43.3 | Plus |
| ben-PD | 151 | CG18319-PD | 3..129 | 32..158 | 292 | 43.3 | Plus |
