Clone BS19513 Report

Search the DGRC for BS19513

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:195
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptTsp42A-RA
Protein status:BS19513.pep: full length peptide match
Sequenced Size:746

Clone Sequence Records

BS19513.complete Sequence

746 bp assembled on 2011-01-27

GenBank Submission: KX803128

> BS19513.complete
GAAGTTATCAGTCGACATGGCTAATCCGTTTCGCTGGTGTCGAGTGTCGC
ACGACTGCGTGTTCCAGATTAATGTGGTTCTGGTGGTGGTCGGAGTGATC
TTTCTGCTTGACGTGCTCAGCCACCTTTATCTGAAGGCGGTCATGTTTCC
AGGCCTTCGTCTATACCCGGTAGCCTTGCGCCCCTGGCTCTTTTGGGTGC
GCGCTTTGACAATGGTTGCCTACATTTTGAACGCTGTTCTTGGGATTCAC
ATGGCCCGACAACCCACCGTCTTGAAGTACGCTGGCTATATGCTCGTTGG
AAGCGTGGTGTTGCTGTACACAATAAGCATCGGAGTGACTCGCTTCATGT
ACCGCAAAAGATTCGAGTTCTTTGCCGAGATGCTGGTGCTGCAGATGTGG
GTGAGAGATAGACTTGGCAAGGTTGAAGTAGAGTTCGAGTGCTGCGGAAG
GTCCAGCGTAGTTGACTACCAGACAGCATCGAGCAACCGCACCTGGCCCA
TTGGCTCTTGCTGCGGGAAGCAGAACTGCACCGGCTGCACTGCGAAGCTT
AGCCAGTACCTGTGGACTATCGAGATGGATGTGGCAAGGGATAATATTAT
CGTATCCGTTCTCTTGTTTGTGGCGATGATCGTCATGGTTTTACACTTTA
AAGATGTGCAATCGCTCGACGACACTAGTGATGTGGATGAGTCTTCAGAA
CTGGTAGACGACTCGGACGCCAAAGAATAAAAGCTTTCTAGACCAT

BS19513.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42A-RB 714 CG14468-PB 1..714 17..730 3570 100 Plus
Tsp42A-RA 714 CG14468-PA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42A-RB 1179 CG14468-RB 57..774 13..730 3575 99.9 Plus
Tsp42A-RA 936 CG14468-RA 57..774 13..730 3575 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5795469..5796186 13..730 3575 99.9 Plus
Blast to na_te.dros performed on 2014-11-26 15:47:42 has no hits.

BS19513.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:03 Download gff for BS19513.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42A-RA 61..765 17..721 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:42 Download gff for BS19513.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42A-RA 61..765 17..721 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:52 Download gff for BS19513.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42A-RA 61..765 17..721 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:52 Download gff for BS19513.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5795473..5796177 17..721 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:42 Download gff for BS19513.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1682978..1683682 17..721 100   Plus

BS19513.pep Sequence

Translation from 16 to 729

> BS19513.pep
MANPFRWCRVSHDCVFQINVVLVVVGVIFLLDVLSHLYLKAVMFPGLRLY
PVALRPWLFWVRALTMVAYILNAVLGIHMARQPTVLKYAGYMLVGSVVLL
YTISIGVTRFMYRKRFEFFAEMLVLQMWVRDRLGKVEVEFECCGRSSVVD
YQTASSNRTWPIGSCCGKQNCTGCTAKLSQYLWTIEMDVARDNIIVSVLL
FVAMIVMVLHFKDVQSLDDTSDVDESSELVDDSDAKE*

BS19513.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42A-PB 237 CG14468-PB 1..237 1..237 1236 100 Plus
Tsp42A-PA 237 CG14468-PA 1..237 1..237 1236 100 Plus