Clone BS19519 Report

Search the DGRC for BS19519

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:195
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptGr28b-RB
Protein status:BS19519.pep: full length peptide match
Sequenced Size:1364

Clone Sequence Records

BS19519.complete Sequence

1364 bp assembled on 2011-01-27

GenBank Submission: KX801014

> BS19519.complete
GAAGTTATCAGTCGACATGTCCGCCCTGCGTCGGGTGCGCAAATACTTTA
TATCCTCTCAGGTCTACGAGGCACTGCGTCCACTATTCTTCCTAACGTTT
CTATACGGACTAACGCCATTTCATGTGGTCAGACGAAAGATGGGGGAATC
CTACTTGAAGATGTCCTGTTTCGGTGTCTTCAACATCTTCATTTACATCT
GCCTCTGCGGATTCTGCTACATTTCATCCCTGAGGCAGGGAGAATCCATT
GTGGGATATTTCTTTCGCACCGAAATCTCCACAATCGGCGATCGTTTGCA
GATCTTTAATGGTTTGATAGCTGGTGCTGTGATTTATACGTCGGCAATCC
TAAAACGCTGCAAGCTTTTGGGCACACTGACCATTCTACACAGCTTGGAT
ACGAACTTCTCGAACATTGGAGTACGTGTGAAATATTCGAGAATATTCCG
GTACTCGCTACTGGTGCTGATCTTCAAGCTACTGATCCTGGGTGTTTATT
TCGTTGGAGTTTTCCGGCTGCTCGTCTCCCTGGATGTCACACCATCGTTC
TGCGTTTGTATGACATTCTTTCTGCAACATTCGGTTGTCTCCATAGCGAT
TTGTTTGTTCTGCGTGATTGCCTTCAGTTTCGAGCGGCGCCTCAGTATCA
TCAATCAGGTGTTGAAGAACCTAGCCCATCAATGGGACACCCGAAGCCTC
AAGGCAGTGAATCAAAAACAGCGCTCTCTACAATGTCTCGATTCATTTTC
CATGTACACCATTGTAACCAAGGATCCTGCGGAGATTATACAGGAGTCCA
TGGAGATACATCATCTCATTTGCGAGGCAGCTGCCACGGCTAACAAATAT
TTTACCTACCAATTGCTGACCATTATATCCATAGCATTTCTGATCATCGT
TTTCGATGCATACTATGTTCTGGAGACGCTACTGGGAAAATCGAAGCGCG
AAAGCAAATTCAAAACTGTGGAATTTGTGACATTTTTCTCGTGTCAAATG
ATTTTGTATCTGATCGCCATAATTTCCATTGTCGAGGGAAGTAATCGAGC
CATCAAAAAGAGCGAGAAAACTGGAGGCATAGTGCACTCCCTACTCAATA
AAACCAAAAGTGCTGAGGTCAAGGAGAAACTGCAGCAATTCTCCATGCAG
TTGATGCATCTGAAAATTAATTTTACTGCAGCTGGTCTGTTCAACATCGA
CCGCACATTGTATTTCACGATCAGCGGGGCCTTGACCACTTATCTCATCA
TCTTGCTGCAGTTCACATCCAATTCCCCGAACAATGGTTATGGGAATGGC
AGCTCTTGCTGTGAGACCTTCAATAATATGACGAATCATACGCTTTAGAA
GCTTTCTAGACCAT

BS19519.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
Gr28b-RB 1332 CG13788-PB 1..1332 17..1348 6660 100 Plus
Gr28b-RD 1323 CG13788-PD 628..1323 653..1348 3480 100 Plus
Gr28b-RC 1413 CG13788-PC 716..1413 651..1348 3475 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
Gr28b-RB 1585 CG13788-RB 72..1404 17..1349 6665 100 Plus
Gr28b-RD 1505 CG13788-RD 628..1324 653..1349 3485 100 Plus
Gr28b-RC 1595 CG13788-RC 716..1414 651..1349 3480 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7459927..7460571 661..17 3225 100 Minus
2L 23513712 2L 7455201..7455764 1219..656 2820 100 Minus
2L 23513712 2L 7455007..7455137 1349..1219 655 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:44:51 has no hits.

BS19519.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:04:56 Download gff for BS19519.complete
Subject Subject Range Query Range Percent Splice Strand
Gr28b-RB 72..1403 17..1348 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:30 Download gff for BS19519.complete
Subject Subject Range Query Range Percent Splice Strand
Gr28b-RB 72..1403 17..1348 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:48 Download gff for BS19519.complete
Subject Subject Range Query Range Percent Splice Strand
Gr28b-RB 72..1403 17..1348 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:48 Download gff for BS19519.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7455008..7455136 1220..1348 100 <- Minus
2L 7455201..7455761 659..1219 100 <- Minus
2L 7459930..7460571 17..658 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:30 Download gff for BS19519.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7455008..7455136 1220..1348 100 <- Minus
arm_2L 7455201..7455761 659..1219 100 <- Minus
arm_2L 7459930..7460571 17..658 100   Minus

BS19519.pep Sequence

Translation from 16 to 1347

> BS19519.pep
MSALRRVRKYFISSQVYEALRPLFFLTFLYGLTPFHVVRRKMGESYLKMS
CFGVFNIFIYICLCGFCYISSLRQGESIVGYFFRTEISTIGDRLQIFNGL
IAGAVIYTSAILKRCKLLGTLTILHSLDTNFSNIGVRVKYSRIFRYSLLV
LIFKLLILGVYFVGVFRLLVSLDVTPSFCVCMTFFLQHSVVSIAICLFCV
IAFSFERRLSIINQVLKNLAHQWDTRSLKAVNQKQRSLQCLDSFSMYTIV
TKDPAEIIQESMEIHHLICEAAATANKYFTYQLLTIISIAFLIIVFDAYY
VLETLLGKSKRESKFKTVEFVTFFSCQMILYLIAIISIVEGSNRAIKKSE
KTGGIVHSLLNKTKSAEVKEKLQQFSMQLMHLKINFTAAGLFNIDRTLYF
TISGALTTYLIILLQFTSNSPNNGYGNGSSCCETFNNMTNHTL*

BS19519.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
Gr28b-PB 443 CG13788-PB 1..443 1..443 2250 100 Plus
Gr28b-PC 470 CG13788-PC 30..470 5..443 1532 68.9 Plus
Gr28b-PD 440 CG13788-PD 9..440 11..443 1397 66.3 Plus
Gr28b-PA 452 CG13788-PA 15..452 6..443 1395 64.4 Plus
Gr28b-PE 447 CG13788-PE 18..447 16..443 1303 64.5 Plus