Clone BS19522 Report

Search the DGRC for BS19522

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:195
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG12825-RA
Protein status:BS19522.pep: full length peptide match
Sequenced Size:624

Clone Sequence Records

BS19522.complete Sequence

624 bp assembled on 2011-01-27

GenBank Submission: KX803758

> BS19522.complete
GAAGTTATCAGTCGACATAATCGGCGGTCTGCAAGTTACTCTGCGATTTT
GGAAACATGTGGAAGCTGGACACCAAAGGAGGAATCATCTGCTCGGGCTG
CCTGTCCATAGCCTTTGCCATAACCTATCTGGTTTTGATGGACGATTACT
TCTGGAAATATGGACTCTACGAGATGGGAATACACATTTCGGCGCTGCAG
ATCTTGGGAAGCGTGGTCCTCATCGTTGGAGCCATAAAGCAAAAGCACAA
GTTCTTCGTGCCGTGGATGATAACCACAGGATTCTTTTTATACCTGATGG
TGAACCTGTTCATTTCACTGATAGTCCAGGGCACAGCTTGGATCTTCGGA
CCATTGATGGTCGTTCCGTTCACAGCCTATCTGGGCTGCGCCCTGTACTC
GGTGCAGAAGGCCTTCGACAGGATGCGCAAGGAGGAGCCACCGGCATATG
CCAGCTTGTCCGACAAGAAGGAGTTCATCAATCACATATAGATACATATA
TAAGCAATTTCAATACAAACAAAAAAAAGATTAAAGGTAGATCAGATAGC
TGGAAAATAAAAGCTCATTTTAAGTGCTATTCAAACGAAACAAAAAAAAA
AAAAAAAAAAGCTTTCTAGACCAT

BS19522.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12825-RA 435 CG12825-PA 1..435 57..491 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12825-RA 585 CG12825-RA 11..585 17..591 2875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7789770..7789991 373..594 1110 100 Plus
2R 25286936 2R 7789216..7789358 17..159 715 100 Plus
2R 25286936 2R 7789570..7789712 233..375 700 99.3 Plus
2R 25286936 2R 7789421..7789500 160..239 400 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:52:39 has no hits.

BS19522.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:37:46 Download gff for BS19522.complete
Subject Subject Range Query Range Percent Splice Strand
CG12825-RA 3..577 17..591 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:54 Download gff for BS19522.complete
Subject Subject Range Query Range Percent Splice Strand
CG12825-RA 11..585 17..591 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:03 Download gff for BS19522.complete
Subject Subject Range Query Range Percent Splice Strand
CG12825-RA 11..585 17..591 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:03 Download gff for BS19522.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7789216..7789358 17..159 100 -> Plus
2R 7789421..7789500 160..239 100 -> Plus
2R 7789577..7789712 240..375 100 -> Plus
2R 7789773..7789988 376..591 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:54 Download gff for BS19522.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3676721..3676863 17..159 100 -> Plus
arm_2R 3676926..3677005 160..239 100 -> Plus
arm_2R 3677082..3677217 240..375 100 -> Plus
arm_2R 3677278..3677493 376..591 100   Plus

BS19522.pep Sequence

Translation from 56 to 490

> BS19522.pep
MWKLDTKGGIICSGCLSIAFAITYLVLMDDYFWKYGLYEMGIHISALQIL
GSVVLIVGAIKQKHKFFVPWMITTGFFLYLMVNLFISLIVQGTAWIFGPL
MVVPFTAYLGCALYSVQKAFDRMRKEEPPAYASLSDKKEFINHI*

BS19522.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12825-PA 144 CG12825-PA 1..144 1..144 761 100 Plus
CG12824-PB 142 CG12824-PB 1..142 1..144 327 49 Plus
CG12824-PA 87 CG12824-PA 1..62 1..64 151 50 Plus