Clone BS19524 Report

Search the DGRC for BS19524

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:195
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG15876-RA
Protein status:BS19524.pep: full length peptide match
Sequenced Size:449

Clone Sequence Records

BS19524.complete Sequence

449 bp assembled on 2011-01-27

GenBank Submission: KX801776

> BS19524.complete
GAAGTTATCAGTCGACATGGAAGCCCAACGTAACAACGCCAACCACCGAC
GCGGAGCTCGTCCGAGCGTGGGCTATCTACTTTTTCAGTACCAGAGCGAG
CTGACCCGCCGTCATGCGGAACCCACGCGGCTGTCCCGCACCAAGATTCA
CATAATCGATGGACTGGTGTCCCGCACCATCCGCCACATGAAGCACTGCA
GCATGGAGGATCTGAGGGCCTGCAAGAGGGAGCTCGTCTACAAGGAGCAG
CTGCGCGATCAGCTCAAGAACATGCGACGCAAACGCTCCTCCTCCGTCAA
CAAAGTCGATGCTAGTGCCAACACATCCGCCCCCGTTGTGAGTGTCAAGG
CGCCCTGCACTCCACCGAAACCTCGATCCTCCACAGGAGAGTTCTCCAAG
ATGGACATCTTCGGACCGGAGATCTTCGTTTAAAAGCTTTCTAGACCAT

BS19524.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG15876-RA 417 CG15876-PA 1..417 17..433 2070 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG15876-RA 641 CG15876-RA 107..523 17..433 2070 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4694323..4694739 433..17 2070 99.8 Minus
Blast to na_te.dros performed on 2014-11-26 15:47:24 has no hits.

BS19524.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:03 Download gff for BS19524.complete
Subject Subject Range Query Range Percent Splice Strand
CG15876-RA 85..499 17..431 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:33 Download gff for BS19524.complete
Subject Subject Range Query Range Percent Splice Strand
CG15876-RA 107..521 17..431 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:45 Download gff for BS19524.complete
Subject Subject Range Query Range Percent Splice Strand
CG15876-RA 107..521 17..431 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:45 Download gff for BS19524.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4694325..4694739 17..431 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:33 Download gff for BS19524.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4694325..4694739 17..431 99   Minus

BS19524.pep Sequence

Translation from 16 to 432

> BS19524.pep
MEAQRNNANHRRGARPSVGYLLFQYQSELTRRHAEPTRLSRTKIHIIDGL
VSRTIRHMKHCSMEDLRACKRELVYKEQLRDQLKNMRRKRSSSVNKVDAS
ANTSAPVVSVKAPCTPPKPRSSTGEFSKMDIFGPEIFV*

BS19524.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG15876-PA 138 CG15876-PA 1..138 1..138 712 100 Plus
CG13713-PA 99 CG13713-PA 8..82 15..89 194 48 Plus
CG13711-PA 127 CG13711-PA 23..119 2..98 158 29.9 Plus
CG13716-PA 117 CG13716-PA 12..94 1..83 135 31.3 Plus