BS19527.complete Sequence
800 bp assembled on 2011-01-27
GenBank Submission: KX806190
> BS19527.complete
GAAGTTATCAGTCGACATGATCAAGAACGCCGTTTCCCTGGTGACCGGAG
GAGCCTCTGGACTGGGCCGCGCCACCGCCGAGCGCCTGGCCAAGCAGGGC
GCCAGCGTGATCCTGGCCGATCTGCCCTCCTCCAAGGGCAACGAGGTGGC
CAAGGAGCTGGGCGACAAGGTGGTCTTCGTGCCCGTGGACGTGACCTCCG
AGAAGGATGTGAGCGCCGCTCTGCAGACGGCCAAGGATAAGTTCGGTCGT
CTGGATCTGACTGTGAACTGTGCGGGCACAGCCACCGCGGTAAAGACGTT
CAACTTCAACAAGAACGTGGCGCACCGCCTGGAAGACTTCCAGCGGGTGA
TCAACATCAATACCGTGGGCACGTTCAATGTGATCCGTCTGTCCGCCGGA
CTGATGGGCGCCAATGAGCCCAATCAGGATGGACAGCGCGGCGTGATCGT
GAACACCGCCTCGGTGGCTGCCTTTGATGGCCAGATCGGCCAGGCGGCCT
ACTCCGCCTCCAAGGCAGCCGTGGTGGGCATGACCCTGCCCATTGCCCGT
GACTTGAGCACCCAGGGCATACGTATCTGCACCATTGCACCGGGTTTGTT
CAACACGCCTATGCTGGCCGCCCTGCCGGAGAAGGTGCGCACCTTCCTGG
CCAAGTCCATACCGTTCCCGCAGCGCCTGGGCGAGCCCAGTGAGTACGCC
CACCTGGTGCAGGCCATCTACGAGAATCCGCTGCTCAACGGCGAGGTCAT
CCGTATCGACGGTGCTCTGCGCATGATGCCCTAGAAGCTTTCTAGACCAT
BS19527.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:55:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scu-RA | 768 | CG7113-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
| scu-RB | 381 | CG7113-PB | 1..381 | 404..784 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scu-RA | 1034 | CG7113-RA | 124..892 | 17..785 | 3845 | 100 | Plus |
| scu-RB | 1134 | CG7113-RB | 232..992 | 25..785 | 3805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18091950..18092711 | 24..785 | 3810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:55:26 has no hits.
BS19527.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:04:37 Download gff for
BS19527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scu-RA | 137..904 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:12 Download gff for
BS19527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scu-RA | 135..902 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:53 Download gff for
BS19527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scu-RA | 124..891 | 17..784 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:53 Download gff for
BS19527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18091950..18092710 | 24..784 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:12 Download gff for
BS19527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17985983..17986743 | 24..784 | 100 | | Plus |
BS19527.pep Sequence
Translation from 16 to 783
> BS19527.pep
MIKNAVSLVTGGASGLGRATAERLAKQGASVILADLPSSKGNEVAKELGD
KVVFVPVDVTSEKDVSAALQTAKDKFGRLDLTVNCAGTATAVKTFNFNKN
VAHRLEDFQRVININTVGTFNVIRLSAGLMGANEPNQDGQRGVIVNTASV
AAFDGQIGQAAYSASKAAVVGMTLPIARDLSTQGIRICTIAPGLFNTPML
AALPEKVRTFLAKSIPFPQRLGEPSEYAHLVQAIYENPLLNGEVIRIDGA
LRMMP*
BS19527.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scu-PA | 255 | CG7113-PA | 1..255 | 1..255 | 1268 | 100 | Plus |
| scu-PB | 126 | CG7113-PB | 1..126 | 130..255 | 636 | 100 | Plus |
| CG3603-PB | 249 | CG3603-PB | 5..249 | 1..252 | 302 | 33.2 | Plus |
| CG3603-PA | 249 | CG3603-PA | 5..249 | 1..252 | 302 | 33.2 | Plus |
| CG12171-PA | 257 | CG12171-PA | 5..229 | 3..234 | 225 | 29.8 | Plus |
